RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PKHD1P08F94 4074 aa12.71□□□□□ -0.37
VPS28-208ENST00000527797 LOC110117498A0A087WWA1 95 aa12.7□□□□□ -0.38
VPS28-208ENST00000527797 PDE6GP18545 87 aa12.7□□□□□ -0.38
VPS28-208ENST00000527797 LINC00483Q53H64 154 aa12.69□□□□□ -0.38
VPS28-208ENST00000527797 TRBV7-4A0A0J9YYF1 115 aa12.68□□□□□ -0.38
VPS28-208ENST00000527797 CCKP06307 115 aa12.67□□□□□ -0.38
VPS28-208ENST00000527797 Q6ZQT0 140 aa12.67□□□□□ -0.38
VPS28-208ENST00000527797 CDK2AP2O75956 126 aa12.66□□□□□ -0.38
VPS28-208ENST00000527797 IGLV8-61A0A075B6I0 122 aa12.63□□□□□ -0.39
VPS28-208ENST00000527797 FAM240AA0A1B0GVK7 77 aa12.62□□□□□ -0.39
VPS28-208ENST00000527797 C21orf62-AS1Q17RA5 79 aa12.62□□□□□ -0.39
VPS28-208ENST00000527797 ACYP1P07311 99 aa12.62□□□□□ -0.39
VPS28-208ENST00000527797 ANAPC11Q9NYG5 84 aa12.61□□□□□ -0.39
VPS28-208ENST00000527797 SPINK6Q6UWN8 80 aa12.6□□□□□ -0.39
VPS28-208ENST00000527797 VPS25Q9BRG1 176 aa12.59□□□□□ -0.39
VPS28-208ENST00000527797 IGLV9-49A0A0B4J1Y8 123 aa12.58□□□□□ -0.4
VPS28-208ENST00000527797 Q6JHZ5 121 aa12.58□□□□□ -0.4
VPS28-208ENST00000527797 IGFL1Q6UW32 110 aa12.57□□□□□ -0.4
VPS28-208ENST00000527797 SRRM2Q9UQ35 2752 aaKnown RBP12.57□□□□□ -0.4
VPS28-208ENST00000527797 KRTAP10-4P60372 401 aaPredicted RBP12.56□□□□□ -0.4
VPS28-208ENST00000527797 C9orf153Q5TBE3 101 aa12.56□□□□□ -0.4
VPS28-208ENST00000527797 FAM229AH3BQW9 127 aa12.55□□□□□ -0.4
VPS28-208ENST00000527797 PLA2G1BP04054 148 aaKnown RBP12.55□□□□□ -0.4
VPS28-208ENST00000527797 APOBP04114 4563 aaKnown RBP12.54□□□□□ -0.4
VPS28-208ENST00000527797 A0A1W2PNM2 257 aa12.52□□□□□ -0.4
VPS28-208ENST00000527797 A0A0G2JQZ4 141 aa12.51□□□□□ -0.41
VPS28-208ENST00000527797 Q8NBF4 154 aa12.51□□□□□ -0.41
VPS28-208ENST00000527797 MOBPQ13875 183 aa12.51□□□□□ -0.41
VPS28-208ENST00000527797 FAM229BQ4G0N7 80 aa12.51□□□□□ -0.41
VPS28-208ENST00000527797 CDIP1Q9H305 208 aa12.51□□□□□ -0.41
VPS28-208ENST00000527797 LINC00846Q9NV44 126 aa12.5□□□□□ -0.41
VPS28-208ENST00000527797 KRTAP1-4P0C5Y4 121 aa12.49□□□□□ -0.41
VPS28-208ENST00000527797 A0A1B0GW54 56 aa12.48□□□□□ -0.41
VPS28-208ENST00000527797 Q5VSD8 79 aa12.46□□□□□ -0.41
VPS28-208ENST00000527797 CRYGAP11844 174 aa12.45□□□□□ -0.42
VPS28-208ENST00000527797 A0A087X002 238 aa12.44□□□□□ -0.42
VPS28-208ENST00000527797 SSBP3-AS1Q7Z2R9 100 aa12.44□□□□□ -0.42
VPS28-208ENST00000527797 Q6Q795 121 aa12.43□□□□□ -0.42
VPS28-208ENST00000527797 UBL5Q9BZL1 73 aa12.43□□□□□ -0.42
VPS28-208ENST00000527797 VPS13BQ7Z7G8 4022 aa12.42□□□□□ -0.42
VPS28-208ENST00000527797 KRTAP13-2Q52LG2 175 aa12.4□□□□□ -0.42
VPS28-208ENST00000527797 LINC00643Q86TS7 51 aa12.39□□□□□ -0.43
VPS28-208ENST00000527797 Q6ZVQ6 151 aa12.37□□□□□ -0.43
VPS28-208ENST00000527797 A0A087WSZ3 146 aa12.36□□□□□ -0.43
VPS28-208ENST00000527797 NREPQ16612 68 aa12.36□□□□□ -0.43
VPS28-208ENST00000527797 Q8N1X5 172 aa12.36□□□□□ -0.43
VPS28-208ENST00000527797 HRCT1Q6UXD1 115 aa12.35□□□□□ -0.43
VPS28-208ENST00000527797 EPPK1P58107 5090 aaKnown RBP12.35□□□□□ -0.43
VPS28-208ENST00000527797 TRBV7-7A0A0K0K1E9 115 aa12.34□□□□□ -0.43
VPS28-208ENST00000527797 RYR1P21817 5038 aa12.33□□□□□ -0.44
VPS28-208ENST00000527797 TYMSOSQ8TAI1 123 aa12.33□□□□□ -0.44
VPS28-208ENST00000527797 SIGMAR1Q99720 223 aa12.33□□□□□ -0.44
VPS28-208ENST00000527797 FAT1Q14517 4588 aa12.32□□□□□ -0.44
VPS28-208ENST00000527797 PRR26Q8N8Z3 221 aa12.32□□□□□ -0.44
VPS28-208ENST00000527797 KRTAP17-1Q9BYP8 105 aa12.32□□□□□ -0.44
VPS28-208ENST00000527797 MT-ATP8P03928 68 aa12.31□□□□□ -0.44
VPS28-208ENST00000527797 CD164Q04900 197 aa12.31□□□□□ -0.44
VPS28-208ENST00000527797 ATP5EP2Q5VTU8 51 aa12.27□□□□□ -0.44
VPS28-208ENST00000527797 HSPG2P98160 4391 aa12.27□□□□□ -0.45
VPS28-208ENST00000527797 IGKV3D-7A0A0C4DH55 119 aa12.26□□□□□ -0.45
VPS28-208ENST00000527797 KIAA1109Q2LD37 5005 aa12.26□□□□□ -0.45
VPS28-208ENST00000527797 SS18L2Q9UHA2 77 aa12.25□□□□□ -0.45
VPS28-208ENST00000527797 C4orf48Q5BLP8 95 aa12.22□□□□□ -0.45
VPS28-208ENST00000527797 BPY2O14599 106 aa12.22□□□□□ -0.45
VPS28-208ENST00000527797 CXCL6P80162 114 aa12.22□□□□□ -0.45
VPS28-208ENST00000527797 LINC00304Q8N9R0 145 aa12.18□□□□□ -0.46
VPS28-208ENST00000527797 IMUPQ9GZP8 106 aa12.17□□□□□ -0.46
VPS28-208ENST00000527797 LINC00472Q9H8W2 130 aa12.17□□□□□ -0.46
VPS28-208ENST00000527797 SPINK1P00995 79 aa12.15□□□□□ -0.46
VPS28-208ENST00000527797 DEFB116Q30KQ4 102 aa12.15□□□□□ -0.46
VPS28-208ENST00000527797 SPAG11AQ6PDA7 123 aa12.15□□□□□ -0.46
VPS28-208ENST00000527797 Q5XG85 94 aa12.14□□□□□ -0.47
VPS28-208ENST00000527797 LIMD2Q9BT23 127 aa12.13□□□□□ -0.47
VPS28-208ENST00000527797 HIST1H4AP62805 103 aaKnown RBP12.12□□□□□ -0.47
VPS28-208ENST00000527797 ASB16-AS1Q495Z4 193 aa12.11□□□□□ -0.47
VPS28-208ENST00000527797 Q96NJ1 140 aa12.11□□□□□ -0.47
VPS28-208ENST00000527797 J3KT08 172 aa12.11□□□□□ -0.47
VPS28-208ENST00000527797 DSCR10P59022 87 aa12.09□□□□□ -0.47
VPS28-208ENST00000527797 KRTAP10-8P60410 259 aa12.08□□□□□ -0.48
VPS28-208ENST00000527797 RPS29P62273 56 aaKnown RBP12.08□□□□□ -0.48
VPS28-208ENST00000527797 PKHD1L1Q86WI1 4243 aa12.08□□□□□ -0.48
VPS28-208ENST00000527797 IGKV4-1P06312 121 aa12.08□□□□□ -0.48
VPS28-208ENST00000527797 Q8N9L7 120 aa12.06□□□□□ -0.48
VPS28-208ENST00000527797 KRTAP4-5Q9BYR2 181 aa12.05□□□□□ -0.48
VPS28-208ENST00000527797 A0A087WVE0 104 aa12.04□□□□□ -0.48
VPS28-208ENST00000527797 A8MWP4 228 aa12.03□□□□□ -0.48
VPS28-208ENST00000527797 K7EQZ3 153 aa12.02□□□□□ -0.49
VPS28-208ENST00000527797 BIRC6Q9NR09 4857 aa12.01□□□□□ -0.49
VPS28-208ENST00000527797 NDUFB1O75438 58 aa12□□□□□ -0.49
VPS28-208ENST00000527797 C1orf195Q5TG92 126 aa12□□□□□ -0.49
VPS28-208ENST00000527797 SCGB1A1P11684 91 aa12□□□□□ -0.49
VPS28-208ENST00000527797 OXTP01178 125 aa11.97□□□□□ -0.49
VPS28-208ENST00000527797 PRR15Q8IV56 129 aa11.97□□□□□ -0.49
VPS28-208ENST00000527797 FAM236AA0A1B0GUQ0 79 aa11.95□□□□□ -0.5
VPS28-208ENST00000527797 FAM236BA0A1B0GV22 79 aa11.95□□□□□ -0.5
VPS28-208ENST00000527797 MT1HL1P0DM35 61 aa11.93□□□□□ -0.5
VPS28-208ENST00000527797 A0A1B0GVX0 72 aa11.92□□□□□ -0.5
VPS28-208ENST00000527797 FLG2Q5D862 2391 aaPredicted RBP11.91□□□□□ -0.5
VPS28-208ENST00000527797 IGHV6-1A0A0B4J1U7 121 aa11.89□□□□□ -0.51
VPS28-208ENST00000527797 HCG22E2RYF7 251 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms