RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 Q5VSD8 79 aa9.98□□□□□ -0.81
PCDHA3-201ENST00000522353 KTN1-AS1Q86SY8 53 aa9.96□□□□□ -0.81
PCDHA3-201ENST00000522353 ZCCHC13Q8WW36 166 aaKnown RBP9.96□□□□□ -0.81
PCDHA3-201ENST00000522353 SPRR1BP22528 89 aa9.96□□□□□ -0.81
PCDHA3-201ENST00000522353 KRTAP1-5Q9BYS1 174 aa9.96□□□□□ -0.81
PCDHA3-201ENST00000522353 SEC61BP60468 96 aaKnown RBP9.96□□□□□ -0.82
PCDHA3-201ENST00000522353 CAMK2N1Q7Z7J9 78 aa9.94□□□□□ -0.82
PCDHA3-201ENST00000522353 A0A0C4DFX4 3053 aa9.94□□□□□ -0.82
PCDHA3-201ENST00000522353 HRES1P13985 223 aa9.94□□□□□ -0.82
PCDHA3-201ENST00000522353 LCA10Q71F78 164 aa9.93□□□□□ -0.82
PCDHA3-201ENST00000522353 CSAG1Q6PB30 78 aa9.93□□□□□ -0.82
PCDHA3-201ENST00000522353 MMP24-AS1A0A0U1RRL7 71 aa9.91□□□□□ -0.82
PCDHA3-201ENST00000522353 Q1T7F1 81 aa9.91□□□□□ -0.82
PCDHA3-201ENST00000522353 MGAQ8IWI9 3026 aa9.9□□□□□ -0.82
PCDHA3-201ENST00000522353 KRTAP10-1P60331 282 aa9.89□□□□□ -0.83
PCDHA3-201ENST00000522353 Q8NDZ9 215 aa9.87□□□□□ -0.83
PCDHA3-201ENST00000522353 A0A1B0GU33 70 aa9.87□□□□□ -0.83
PCDHA3-201ENST00000522353 IGSF10Q6WRI0 2623 aa9.87□□□□□ -0.83
PCDHA3-201ENST00000522353 LAMA3Q16787 3333 aa9.86□□□□□ -0.83
PCDHA3-201ENST00000522353 KRTAP10-2P60368 255 aa9.85□□□□□ -0.83
PCDHA3-201ENST00000522353 KRTAP26-1Q6PEX3 210 aa9.84□□□□□ -0.83
PCDHA3-201ENST00000522353 GCN1Q92616 2671 aaKnown RBP9.83□□□□□ -0.84
PCDHA3-201ENST00000522353 UBR5O95071 2799 aaPredicted RBP9.83□□□□□ -0.84
PCDHA3-201ENST00000522353 Q5XG85 94 aa9.82□□□□□ -0.84
PCDHA3-201ENST00000522353 MKI67P46013 3256 aaKnown RBP9.82□□□□□ -0.84
PCDHA3-201ENST00000522353 CYSTM1Q9H1C7 97 aa9.81□□□□□ -0.84
PCDHA3-201ENST00000522353 S4R3F8 94 aa9.81□□□□□ -0.84
PCDHA3-201ENST00000522353 SPINK7P58062 85 aa9.81□□□□□ -0.84
PCDHA3-201ENST00000522353 LINC00472Q9H8W2 130 aa9.81□□□□□ -0.84
PCDHA3-201ENST00000522353 Q8N9P0 234 aaPredicted RBP9.79□□□□□ -0.84
PCDHA3-201ENST00000522353 Q6ZR54 194 aa9.78□□□□□ -0.84
PCDHA3-201ENST00000522353 Q75L30 129 aa9.78□□□□□ -0.84
PCDHA3-201ENST00000522353 DSPP15924 2871 aaKnown RBP9.77□□□□□ -0.85
PCDHA3-201ENST00000522353 LINC01558Q9Y6Z2 57 aa9.76□□□□□ -0.85
PCDHA3-201ENST00000522353 FP248Q71RG6 208 aaPredicted RBP9.76□□□□□ -0.85
PCDHA3-201ENST00000522353 STAB2Q8WWQ8 2551 aa9.76□□□□□ -0.85
PCDHA3-201ENST00000522353 DMBT1Q9UGM3 2413 aaPredicted RBP9.76□□□□□ -0.85
PCDHA3-201ENST00000522353 Q5W150 140 aa9.75□□□□□ -0.85
PCDHA3-201ENST00000522353 LUZP6Q538Z0 58 aa9.75□□□□□ -0.85
PCDHA3-201ENST00000522353 NSD1Q96L73 2696 aaPredicted RBP9.74□□□□□ -0.85
PCDHA3-201ENST00000522353 MAP1AP78559 2803 aaPredicted RBP9.73□□□□□ -0.85
PCDHA3-201ENST00000522353 OXTP01178 125 aa9.73□□□□□ -0.85
PCDHA3-201ENST00000522353 DMAC1Q96GE9 116 aa9.72□□□□□ -0.85
PCDHA3-201ENST00000522353 LINC00483Q53H64 154 aa9.7□□□□□ -0.86
PCDHA3-201ENST00000522353 R4GN34 69 aa9.7□□□□□ -0.86
PCDHA3-201ENST00000522353 BRCA2P51587 3418 aa9.69□□□□□ -0.86
PCDHA3-201ENST00000522353 CFAP54Q96N23 3096 aa9.69□□□□□ -0.86
PCDHA3-201ENST00000522353 WDFY4Q6ZS81 3184 aa9.65□□□□□ -0.86
PCDHA3-201ENST00000522353 LAMA2P24043 3122 aaKnown RBP9.65□□□□□ -0.87
PCDHA3-201ENST00000522353 PRUNE2Q8WUY3 3088 aa9.65□□□□□ -0.87
PCDHA3-201ENST00000522353 ITPR2Q14571 2701 aa9.64□□□□□ -0.87
PCDHA3-201ENST00000522353 PANO1I0J062 215 aa9.61□□□□□ -0.87
PCDHA3-201ENST00000522353 KRTAP21-3Q3LHN1 58 aa9.61□□□□□ -0.87
PCDHA3-201ENST00000522353 NBEAL2Q6ZNJ1 2754 aa9.59□□□□□ -0.87
PCDHA3-201ENST00000522353 KRTAP4-16G5E9R7 235 aaPredicted RBP9.56□□□□□ -0.88
PCDHA3-201ENST00000522353 A0A087X002 238 aa9.52□□□□□ -0.89
PCDHA3-201ENST00000522353 Q5VV11 94 aa9.52□□□□□ -0.89
PCDHA3-201ENST00000522353 ITPR1Q14643 2758 aa9.51□□□□□ -0.89
PCDHA3-201ENST00000522353 UNC80Q8N2C7 3258 aa9.5□□□□□ -0.89
PCDHA3-201ENST00000522353 FRYQ5TBA9 3013 aa9.49□□□□□ -0.89
PCDHA3-201ENST00000522353 TRIOO75962 3097 aa9.48□□□□□ -0.89
PCDHA3-201ENST00000522353 Q6ZRN7 208 aaPredicted RBP9.48□□□□□ -0.89
PCDHA3-201ENST00000522353 RPS29P62273 56 aaKnown RBP9.46□□□□□ -0.89
PCDHA3-201ENST00000522353 M0QZ58 72 aa9.46□□□□□ -0.89
PCDHA3-201ENST00000522353 RPL37P61927 97 aaKnown RBP9.45□□□□□ -0.9
PCDHA3-201ENST00000522353 VPS13AQ96RL7 3174 aa9.43□□□□□ -0.9
PCDHA3-201ENST00000522353 FLNCQ14315 2725 aa9.43□□□□□ -0.9
PCDHA3-201ENST00000522353 XIRP2A4UGR9 3374 aa9.43□□□□□ -0.9
PCDHA3-201ENST00000522353 TENM4Q6N022 2769 aa9.42□□□□□ -0.9
PCDHA3-201ENST00000522353 KRTAP29-1A8MX34 341 aaPredicted RBP9.41□□□□□ -0.9
PCDHA3-201ENST00000522353 PLAC4Q8WY50 150 aa9.4□□□□□ -0.9
PCDHA3-201ENST00000522353 ASB16-AS1Q495Z4 193 aa9.4□□□□□ -0.91
PCDHA3-201ENST00000522353 PRAC1Q96KF2 57 aa9.38□□□□□ -0.91
PCDHA3-201ENST00000522353 KMT2BQ9UMN6 2715 aaPredicted RBP9.38□□□□□ -0.91
PCDHA3-201ENST00000522353 HIVEP1P15822 2718 aa9.38□□□□□ -0.91
PCDHA3-201ENST00000522353 H1FX-AS1Q4G0G2 97 aa9.38□□□□□ -0.91
PCDHA3-201ENST00000522353 REV3LO60673 3130 aa9.34□□□□□ -0.92
PCDHA3-201ENST00000522353 ROMO1P60602 79 aa9.33□□□□□ -0.92
PCDHA3-201ENST00000522353 CDH23Q9H251 3354 aa9.33□□□□□ -0.92
PCDHA3-201ENST00000522353 ADM2Q7Z4H4 148 aa9.32□□□□□ -0.92
PCDHA3-201ENST00000522353 TACC2O95359 2948 aa9.31□□□□□ -0.92
PCDHA3-201ENST00000522353 KRTAP11-1Q8IUC1 163 aa9.29□□□□□ -0.92
PCDHA3-201ENST00000522353 NOTCH2NLQ7Z3S9 236 aa9.23□□□□□ -0.93
PCDHA3-201ENST00000522353 UTP20O75691 2785 aaKnown RBP9.23□□□□□ -0.93
PCDHA3-201ENST00000522353 A0A0A0MQY5 61 aa9.22□□□□□ -0.93
PCDHA3-201ENST00000522353 KRTAP13-2Q52LG2 175 aa9.22□□□□□ -0.93
PCDHA3-201ENST00000522353 NIPBLQ6KC79 2804 aaeCLIP9.21□□□□□ -0.94
PCDHA3-201ENST00000522353 KRTAP7-1Q8IUC3 87 aa9.2□□□□□ -0.94
PCDHA3-201ENST00000522353 KRTAP13-1Q8IUC0 172 aa9.2□□□□□ -0.94
PCDHA3-201ENST00000522353 SPATA8Q6RVD6 105 aa9.17□□□□□ -0.94
PCDHA3-201ENST00000522353 COL12A1Q99715 3063 aa9.17□□□□□ -0.94
PCDHA3-201ENST00000522353 ATMQ13315 3056 aa9.16□□□□□ -0.94
PCDHA3-201ENST00000522353 SZT2Q5T011 3432 aa9.15□□□□□ -0.94
PCDHA3-201ENST00000522353 FRYLO94915 3013 aa9.13□□□□□ -0.95
PCDHA3-201ENST00000522353 LAMA1P25391 3075 aa9.13□□□□□ -0.95
PCDHA3-201ENST00000522353 C20orf166-AS1Q96NR2 134 aa9.12□□□□□ -0.95
PCDHA3-201ENST00000522353 NBEAQ8NFP9 2946 aa9.12□□□□□ -0.95
PCDHA3-201ENST00000522353 A8MUU9 505 aa9.1□□□□□ -0.95
PCDHA3-201ENST00000522353 DMXL2Q8TDJ6 3036 aa9.08□□□□□ -0.96
PCDHA3-201ENST00000522353 CELSR3Q9NYQ7 3312 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms