RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 DEFB1P60022 68 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 FRYQ5TBA9 3013 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 NBEAL2Q6ZNJ1 2754 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 CCDC168Q8NDH2 2452 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 CEP295Q9C0D2 2601 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 DNAH7Q8WXX0 4024 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 MYMXA0A1B0GTQ4 84 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 C9orf92A6NGG3 77 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 MT1HP80294 61 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 MTORP42345 2549 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 SMG1Q96Q15 3661 aaKnown RBP-0.52□□□□□ -2.49
NUP54-215ENST00000514313 EYSQ5T1H1 3165 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 ZZEF1O43149 2961 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 CHD7Q9P2D1 2997 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 DNAH11Q96DT5 4516 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 GCN1Q92616 2671 aaKnown RBP-0.52□□□□□ -2.49
NUP54-215ENST00000514313 COL6A5A8TX70 2615 aa-0.52□□□□□ -2.49
NUP54-215ENST00000514313 NBASA2RRP1 2371 aa-0.53□□□□□ -2.49
NUP54-215ENST00000514313 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.53□□□□□ -2.497e-29■■■■■ 106.2
NUP54-215ENST00000514313 GAFA1Q96PS6 74 aa-0.53□□□□□ -2.49
NUP54-215ENST00000514313 LRRC7Q96NW7 1537 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 PKD1L2Q7Z442 2459 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 ACACAQ13085 2346 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 CFAP46Q8IYW2 2715 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 BCORQ6W2J9 1755 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 H0YAA0 97 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 MT1HL1P0DM35 61 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 SNRPFP62306 86 aaKnown RBP-0.54□□□□□ -2.5
NUP54-215ENST00000514313 DEFB110Q30KQ9 67 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 TRANK1O15050 2925 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 DNAH8Q96JB1 4490 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 ITPR2Q14571 2701 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 TRRAPQ9Y4A5 3859 aa-0.54□□□□□ -2.5
NUP54-215ENST00000514313 DNAH17Q9UFH2 4485 aa-0.55□□□□□ -2.5
NUP54-215ENST00000514313 KNL1Q8NG31 2342 aa-0.55□□□□□ -2.5
NUP54-215ENST00000514313 RGPD1P0DJD0 1748 aa-0.55□□□□□ -2.5
NUP54-215ENST00000514313 QSER1Q2KHR3 1735 aa-0.55□□□□□ -2.5
NUP54-215ENST00000514313 ADAMTS12P58397 1594 aa-0.56□□□□□ -2.5
NUP54-215ENST00000514313 WFDC13Q8IUB5 93 aa-0.56□□□□□ -2.5
NUP54-215ENST00000514313 C5orf42Q9H799 3197 aa-0.56□□□□□ -2.5
NUP54-215ENST00000514313 DMXL2Q8TDJ6 3036 aa-0.56□□□□□ -2.5
NUP54-215ENST00000514313 PTPN23Q9H3S7 1636 aa-0.56□□□□□ -2.5
NUP54-215ENST00000514313 ABCC3O15438 1527 aa-0.57□□□□□ -2.5
NUP54-215ENST00000514313 MT1XP80297 61 aa-0.57□□□□□ -2.5
NUP54-215ENST00000514313 KRTAP20-1Q3LI63 56 aa-0.57□□□□□ -2.5
NUP54-215ENST00000514313 S4R3F8 94 aa-0.57□□□□□ -2.5
NUP54-215ENST00000514313 CSMD1Q96PZ7 3565 aa-0.57□□□□□ -2.5
NUP54-215ENST00000514313 DNAH10Q8IVF4 4471 aa-0.57□□□□□ -2.5
NUP54-215ENST00000514313 RANBP2P49792 3224 aaKnown RBP-0.58□□□□□ -2.5
NUP54-215ENST00000514313 KRTAP19-6Q3LI70 58 aa-0.58□□□□□ -2.5
NUP54-215ENST00000514313 REV3LO60673 3130 aa-0.58□□□□□ -2.5
NUP54-215ENST00000514313 SPENQ96T58 3664 aaKnown RBP-0.59□□□□□ -2.5
NUP54-215ENST00000514313 SPTBN5Q9NRC6 3674 aaKnown RBP-0.59□□□□□ -2.5
NUP54-215ENST00000514313 CEP290O15078 2479 aa-0.59□□□□□ -2.5
NUP54-215ENST00000514313 CLPSL2Q6UWE3 100 aa-0.59□□□□□ -2.5
NUP54-215ENST00000514313 LINC00643Q86TS7 51 aa-0.59□□□□□ -2.5
NUP54-215ENST00000514313 ZFHX4Q86UP3 3567 aa-0.6□□□□□ -2.5
NUP54-215ENST00000514313 TLN1Q9Y490 2541 aaKnown RBP-0.6□□□□□ -2.5
NUP54-215ENST00000514313 ATMQ13315 3056 aa-0.6□□□□□ -2.51
NUP54-215ENST00000514313 ADGRG4Q8IZF6 3080 aa-0.6□□□□□ -2.51
NUP54-215ENST00000514313 MT1GP13640 62 aa-0.6□□□□□ -2.51
NUP54-215ENST00000514313 MYO9AB2RTY4 2548 aa-0.6□□□□□ -2.51
NUP54-215ENST00000514313 LRBAP50851 2863 aa-0.6□□□□□ -2.51
NUP54-215ENST00000514313 CICQ96RK0 1608 aaPredicted RBP-0.6□□□□□ -2.51
NUP54-215ENST00000514313 TRAV21A0A0B4J279 112 aa-0.61□□□□□ -2.51
NUP54-215ENST00000514313 RABAC1Q9UI14 185 aa-0.61□□□□□ -2.51
NUP54-215ENST00000514313 ACACBO00763 2458 aa-0.61□□□□□ -2.51
NUP54-215ENST00000514313 BPTFQ12830 3046 aa-0.62□□□□□ -2.51
NUP54-215ENST00000514313 BOD1L1Q8NFC6 3051 aa-0.62□□□□□ -2.51
NUP54-215ENST00000514313 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.62□□□□□ -2.51
NUP54-215ENST00000514313 MAP3K1Q13233 1512 aa-0.63□□□□□ -2.51
NUP54-215ENST00000514313 GNG2P59768 71 aa-0.63□□□□□ -2.51
NUP54-215ENST00000514313 TDRG1Q3Y452 100 aa-0.63□□□□□ -2.51
NUP54-215ENST00000514313 MYO15AQ9UKN7 3530 aa-0.63□□□□□ -2.51
NUP54-215ENST00000514313 FAM186AA6NE01 2351 aa-0.63□□□□□ -2.51
NUP54-215ENST00000514313 CEBPZOSA8MTT3 80 aa-0.64□□□□□ -2.51
NUP54-215ENST00000514313 MT2AP02795 61 aa-0.64□□□□□ -2.51
NUP54-215ENST00000514313 MT1BP07438 61 aa-0.64□□□□□ -2.51
NUP54-215ENST00000514313 RPL38P63173 70 aaKnown RBP-0.64□□□□□ -2.51
NUP54-215ENST00000514313 PRLHP81277 87 aa-0.64□□□□□ -2.51
NUP54-215ENST00000514313 MT1MQ8N339 61 aa-0.64□□□□□ -2.51
NUP54-215ENST00000514313 TLN2Q9Y4G6 2542 aa-0.64□□□□□ -2.51
NUP54-215ENST00000514313 PDE4DIPQ5VU43 2346 aa-0.65□□□□□ -2.51
NUP54-215ENST00000514313 LRRC9Q6ZRR7 1453 aa-0.65□□□□□ -2.51
NUP54-215ENST00000514313 MT1EP04732 61 aa-0.65□□□□□ -2.51
NUP54-215ENST00000514313 KRTAP19-5Q3LI72 72 aa-0.65□□□□□ -2.51
NUP54-215ENST00000514313 MT1LQ93083 61 aa-0.65□□□□□ -2.51
NUP54-215ENST00000514313 PREX1Q8TCU6 1659 aa-0.65□□□□□ -2.51
NUP54-215ENST00000514313 CDC42BPGQ6DT37 1551 aa-0.66□□□□□ -2.51
NUP54-215ENST00000514313 PRUNE2Q8WUY3 3088 aa-0.66□□□□□ -2.51
NUP54-215ENST00000514313 TNP1P09430 55 aa-0.66□□□□□ -2.52
NUP54-215ENST00000514313 WFDC9Q8NEX5 89 aa-0.66□□□□□ -2.52
NUP54-215ENST00000514313 SPTAN1Q13813 2472 aaKnown RBP-0.66□□□□□ -2.52
NUP54-215ENST00000514313 CSMD2Q7Z408 3487 aa-0.67□□□□□ -2.52
NUP54-215ENST00000514313 COX6B2Q6YFQ2 88 aa-0.67□□□□□ -2.52
NUP54-215ENST00000514313 DEFB106AQ8N104 65 aa-0.67□□□□□ -2.52
NUP54-215ENST00000514313 FREM2Q5SZK8 3169 aa-0.67□□□□□ -2.52
NUP54-215ENST00000514313 DMDP11532 3685 aa-0.67□□□□□ -2.52
NUP54-215ENST00000514313 DCHS1Q96JQ0 3298 aa-0.67□□□□□ -2.52
NUP54-215ENST00000514313 CFAP54Q96N23 3096 aa-0.68□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms