RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FAM229BQ4G0N7 80 aa10.77□□□□□ -0.69
SDC1-203ENST00000403076 MTURNQ8N3F0 131 aa10.77□□□□□ -0.69
SDC1-203ENST00000403076 C3orf22Q8N5N4 141 aa10.77□□□□□ -0.69
SDC1-203ENST00000403076 CRYGAP11844 174 aa10.76□□□□□ -0.69
SDC1-203ENST00000403076 IGLV9-49A0A0B4J1Y8 123 aa10.74□□□□□ -0.69
SDC1-203ENST00000403076 F8WEM9 126 aa10.74□□□□□ -0.69
SDC1-203ENST00000403076 SMIM29Q86T20 159 aa10.74□□□□□ -0.69
SDC1-203ENST00000403076 PCLOQ9Y6V0 5065 aa10.74□□□□□ -0.69
SDC1-203ENST00000403076 NDUFV3P56181 108 aaKnown RBP10.74□□□□□ -0.69
SDC1-203ENST00000403076 H3BT86 120 aa10.73□□□□□ -0.69
SDC1-203ENST00000403076 A0A087X002 238 aa10.72□□□□□ -0.69
SDC1-203ENST00000403076 UBE2V1Q13404 147 aa10.72□□□□□ -0.69
SDC1-203ENST00000403076 C9orf153Q5TBE3 101 aa10.72□□□□□ -0.69
SDC1-203ENST00000403076 PRR26Q8N8Z3 221 aa10.72□□□□□ -0.69
SDC1-203ENST00000403076 FLG2Q5D862 2391 aaPredicted RBP10.72□□□□□ -0.69
SDC1-203ENST00000403076 ANKRD29Q8N6D5 301 aa10.71□□□□□ -0.69
SDC1-203ENST00000403076 A0A1B0GV72 72 aa10.69□□□□□ -0.7
SDC1-203ENST00000403076 MOBPQ13875 183 aa10.69□□□□□ -0.7
SDC1-203ENST00000403076 LINC01600Q96MT4 127 aa10.69□□□□□ -0.7
SDC1-203ENST00000403076 PRO0461Q9UI25 63 aa10.69□□□□□ -0.7
SDC1-203ENST00000403076 F8W1H4 67 aa10.68□□□□□ -0.7
SDC1-203ENST00000403076 KRTAP13-2Q52LG2 175 aa10.68□□□□□ -0.7
SDC1-203ENST00000403076 TYMSOSQ8TAI1 123 aa10.68□□□□□ -0.7
SDC1-203ENST00000403076 SMCPP49901 116 aaPredicted RBP10.66□□□□□ -0.7
SDC1-203ENST00000403076 PKHD1L1Q86WI1 4243 aa10.66□□□□□ -0.7
SDC1-203ENST00000403076 Q8NBF4 154 aa10.66□□□□□ -0.7
SDC1-203ENST00000403076 OXTP01178 125 aa10.64□□□□□ -0.71
SDC1-203ENST00000403076 SSBP3-AS1Q7Z2R9 100 aa10.63□□□□□ -0.71
SDC1-203ENST00000403076 JMJD7-PLA2G4BH0Y9G9 81 aa10.62□□□□□ -0.71
SDC1-203ENST00000403076 RBM3P98179 157 aaKnown RBP10.62□□□□□ -0.71
SDC1-203ENST00000403076 IGLV8-61A0A075B6I0 122 aa10.61□□□□□ -0.71
SDC1-203ENST00000403076 Q6JHZ5 121 aa10.61□□□□□ -0.71
SDC1-203ENST00000403076 A0A0G2JQZ4 141 aa10.58□□□□□ -0.72
SDC1-203ENST00000403076 DSCR8Q96T75 97 aa10.58□□□□□ -0.72
SDC1-203ENST00000403076 KRTAP10-8P60410 259 aa10.58□□□□□ -0.72
SDC1-203ENST00000403076 IGFL1Q6UW32 110 aa10.58□□□□□ -0.72
SDC1-203ENST00000403076 OBSCN-AS1Q96MR7 158 aa10.58□□□□□ -0.72
SDC1-203ENST00000403076 KRTAP29-1A8MX34 341 aaPredicted RBP10.57□□□□□ -0.72
SDC1-203ENST00000403076 C4orf48Q5BLP8 95 aa10.56□□□□□ -0.72
SDC1-203ENST00000403076 C14orf132Q9NPU4 83 aa10.56□□□□□ -0.72
SDC1-203ENST00000403076 ABCA13Q86UQ4 5058 aa10.56□□□□□ -0.72
SDC1-203ENST00000403076 TEN1Q86WV5 123 aa10.55□□□□□ -0.72
SDC1-203ENST00000403076 ETDBQ3ZM63 59 aa10.54□□□□□ -0.72
SDC1-203ENST00000403076 HRCT1Q6UXD1 115 aa10.54□□□□□ -0.72
SDC1-203ENST00000403076 LINC00304Q8N9R0 145 aa10.54□□□□□ -0.72
SDC1-203ENST00000403076 TRBV7-4A0A0J9YYF1 115 aa10.53□□□□□ -0.72
SDC1-203ENST00000403076 J3QL48 77 aa10.53□□□□□ -0.72
SDC1-203ENST00000403076 MT1HL1P0DM35 61 aa10.53□□□□□ -0.72
SDC1-203ENST00000403076 LRP1Q07954 4544 aaKnown RBP10.52□□□□□ -0.73
SDC1-203ENST00000403076 VPS25Q9BRG1 176 aa10.52□□□□□ -0.73
SDC1-203ENST00000403076 CCKP06307 115 aa10.5□□□□□ -0.73
SDC1-203ENST00000403076 PDE6GP18545 87 aa10.5□□□□□ -0.73
SDC1-203ENST00000403076 SPAG11AQ6PDA7 123 aa10.49□□□□□ -0.73
SDC1-203ENST00000403076 LOC110117498A0A087WWA1 95 aa10.48□□□□□ -0.73
SDC1-203ENST00000403076 FAT3Q8TDW7 4589 aa10.48□□□□□ -0.73
SDC1-203ENST00000403076 CD164Q04900 197 aa10.48□□□□□ -0.73
SDC1-203ENST00000403076 Q6ZQT0 140 aa10.48□□□□□ -0.73
SDC1-203ENST00000403076 MYCBP2O75592 4640 aa10.48□□□□□ -0.73
SDC1-203ENST00000403076 A0A1W2PNM2 257 aa10.47□□□□□ -0.73
SDC1-203ENST00000403076 C21orf62-AS1Q17RA5 79 aa10.47□□□□□ -0.73
SDC1-203ENST00000403076 SPINK1P00995 79 aa10.45□□□□□ -0.74
SDC1-203ENST00000403076 Q6Q795 121 aa10.43□□□□□ -0.74
SDC1-203ENST00000403076 TRBV7-7A0A0K0K1E9 115 aa10.43□□□□□ -0.74
SDC1-203ENST00000403076 DMBT1Q9UGM3 2413 aaPredicted RBP10.42□□□□□ -0.74
SDC1-203ENST00000403076 A0A087WSZ3 146 aa10.4□□□□□ -0.74
SDC1-203ENST00000403076 LIMD2Q9BT23 127 aa10.4□□□□□ -0.74
SDC1-203ENST00000403076 TNXBP22105 4242 aa10.38□□□□□ -0.75
SDC1-203ENST00000403076 A0A1B0GW54 56 aa10.38□□□□□ -0.75
SDC1-203ENST00000403076 RPS29P62273 56 aaKnown RBP10.38□□□□□ -0.75
SDC1-203ENST00000403076 SS18L2Q9UHA2 77 aa10.36□□□□□ -0.75
SDC1-203ENST00000403076 Q5XG85 94 aa10.33□□□□□ -0.76
SDC1-203ENST00000403076 K7ERU9 68 aa10.32□□□□□ -0.76
SDC1-203ENST00000403076 J3QR89 54 aa10.28□□□□□ -0.76
SDC1-203ENST00000403076 FAM240AA0A1B0GVK7 77 aa10.28□□□□□ -0.76
SDC1-203ENST00000403076 RETNLBQ9BQ08 111 aa10.28□□□□□ -0.76
SDC1-203ENST00000403076 ACYP1P07311 99 aa10.27□□□□□ -0.77
SDC1-203ENST00000403076 NREPQ16612 68 aa10.27□□□□□ -0.77
SDC1-203ENST00000403076 ASB16-AS1Q495Z4 193 aa10.27□□□□□ -0.77
SDC1-203ENST00000403076 C1orf195Q5TG92 126 aa10.24□□□□□ -0.77
SDC1-203ENST00000403076 LINC00846Q9NV44 126 aa10.24□□□□□ -0.77
SDC1-203ENST00000403076 PCP4P48539 62 aa10.23□□□□□ -0.77
SDC1-203ENST00000403076 UBL5Q9BZL1 73 aa10.23□□□□□ -0.77
SDC1-203ENST00000403076 DEFB116Q30KQ4 102 aa10.21□□□□□ -0.78
SDC1-203ENST00000403076 LINC00472Q9H8W2 130 aa10.2□□□□□ -0.78
SDC1-203ENST00000403076 PRR4Q16378 134 aa10.19□□□□□ -0.78
SDC1-203ENST00000403076 Q6ZVQ6 151 aa10.19□□□□□ -0.78
SDC1-203ENST00000403076 Q96NJ1 140 aa10.19□□□□□ -0.78
SDC1-203ENST00000403076 IGKV4-1P06312 121 aa10.18□□□□□ -0.78
SDC1-203ENST00000403076 SIGMAR1Q99720 223 aa10.17□□□□□ -0.78
SDC1-203ENST00000403076 HERC1Q15751 4861 aa10.16□□□□□ -0.78
SDC1-203ENST00000403076 FP248Q71RG6 208 aaPredicted RBP10.16□□□□□ -0.78
SDC1-203ENST00000403076 J3KT08 172 aa10.14□□□□□ -0.79
SDC1-203ENST00000403076 IGLV7-46A0A075B6I9 117 aa10.13□□□□□ -0.79
SDC1-203ENST00000403076 BPY2O14599 106 aa10.12□□□□□ -0.79
SDC1-203ENST00000403076 NDUFB1O75438 58 aa10.08□□□□□ -0.8
SDC1-203ENST00000403076 LINC00643Q86TS7 51 aa10.05□□□□□ -0.8
SDC1-203ENST00000403076 IGHV6-1A0A0B4J1U7 121 aa10.04□□□□□ -0.8
SDC1-203ENST00000403076 A8MWP4 228 aa10.04□□□□□ -0.8
SDC1-203ENST00000403076 DSCR10P59022 87 aa10.04□□□□□ -0.8
SDC1-203ENST00000403076 CDIP1Q9H305 208 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms