RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SPATA8Q6RVD6 105 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 Q6ZRN7 208 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-204ENST00000399489 C5orf56Q8N8D9 126 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 ABCA4P78363 2273 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 DNAJC13O75165 2243 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 ANKHD1Q8IWZ3 2542 aaKnown RBP2.05□□□□□ -2.08
HMGB1-204ENST00000399489 APCP25054 2843 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 RP1L1Q8IWN7 2480 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-204ENST00000399489 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-204ENST00000399489 K7EMI3 77 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 LINC00322Q6ZN03 302 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-204ENST00000399489 COA5Q86WW8 74 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 U3KQA8 63 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 DOCK10Q96BY6 2186 aa2.04□□□□□ -2.08
HMGB1-204ENST00000399489 LCE6AA0A183 80 aa2.04□□□□□ -2.08
HMGB1-204ENST00000399489 PLNP26678 52 aa2.04□□□□□ -2.08
HMGB1-204ENST00000399489 FXYD4P59646 89 aa2.04□□□□□ -2.08
HMGB1-204ENST00000399489 KRTAP5-7Q6L8G8 165 aa2.04□□□□□ -2.08
HMGB1-204ENST00000399489 GAFA1Q96PS6 74 aa2.04□□□□□ -2.08
HMGB1-204ENST00000399489 FREM1Q5H8C1 2179 aa2.04□□□□□ -2.08
HMGB1-204ENST00000399489 TRGV1A0A0A0MS02 117 aa2.03□□□□□ -2.08
HMGB1-204ENST00000399489 SMIM27A0A1W2PRY6 76 aa2.03□□□□□ -2.08
HMGB1-204ENST00000399489 IGKV4-1P06312 121 aa2.03□□□□□ -2.08
HMGB1-204ENST00000399489 DEFB112Q30KQ8 113 aa2.03□□□□□ -2.08
HMGB1-204ENST00000399489 INTS1Q8N201 2190 aaKnown RBP2.03□□□□□ -2.08
HMGB1-204ENST00000399489 FN1P02751 2386 aaKnown RBP2.03□□□□□ -2.08
HMGB1-204ENST00000399489 NIPBLQ6KC79 2804 aaeCLIP2.03□□□□□ -2.08
HMGB1-204ENST00000399489 STAB1Q9NY15 2570 aa2.03□□□□□ -2.08
HMGB1-204ENST00000399489 CEP192Q8TEP8 1941 aa2.03□□□□□ -2.08
HMGB1-204ENST00000399489 NBEAL1Q6ZS30 2694 aa2.03□□□□□ -2.09
HMGB1-204ENST00000399489 TRGV2A0A075B6R0 118 aa2.03□□□□□ -2.09
HMGB1-204ENST00000399489 LOC110117498A0A087WWA1 95 aa2.03□□□□□ -2.09
HMGB1-204ENST00000399489 SERF2P84101 59 aa2.03□□□□□ -2.09
HMGB1-204ENST00000399489 OBSCN-AS1Q96MR7 158 aa2.03□□□□□ -2.09
HMGB1-204ENST00000399489 Q96NJ1 140 aa2.03□□□□□ -2.09
HMGB1-204ENST00000399489 ALPK2Q86TB3 2170 aa2.02□□□□□ -2.09
HMGB1-204ENST00000399489 VPS13CQ709C8 3753 aa2.02□□□□□ -2.09
HMGB1-204ENST00000399489 M0R2N4 97 aa2.02□□□□□ -2.09
HMGB1-204ENST00000399489 INE1O15225 51 aa2.02□□□□□ -2.09
HMGB1-204ENST00000399489 CAV3P56539 151 aa2.02□□□□□ -2.09
HMGB1-204ENST00000399489 ZCCHC13Q8WW36 166 aaKnown RBP2.02□□□□□ -2.09
HMGB1-204ENST00000399489 CUBNO60494 3623 aa2.01□□□□□ -2.09
HMGB1-204ENST00000399489 ACYP2P14621 99 aa2.01□□□□□ -2.09
HMGB1-204ENST00000399489 CSPG4Q6UVK1 2322 aa2.01□□□□□ -2.09
HMGB1-204ENST00000399489 LINC00472Q9H8W2 130 aa2.01□□□□□ -2.09
HMGB1-204ENST00000399489 MED13LQ71F56 2210 aa2.01□□□□□ -2.09
HMGB1-204ENST00000399489 DCHS2Q6V1P9 2916 aa2.01□□□□□ -2.09
HMGB1-204ENST00000399489 ANK3Q12955 4377 aaKnown RBP2.01□□□□□ -2.09
HMGB1-204ENST00000399489 TACC2O95359 2948 aa2□□□□□ -2.09
HMGB1-204ENST00000399489 LCE3DQ9BYE3 92 aa2□□□□□ -2.09
HMGB1-204ENST00000399489 JMJD1CQ15652 2540 aa2□□□□□ -2.09
HMGB1-204ENST00000399489 ATRQ13535 2644 aa2□□□□□ -2.09
HMGB1-204ENST00000399489 FBN1P35555 2871 aaKnown RBP2□□□□□ -2.09
HMGB1-204ENST00000399489 ACANP16112 2415 aa1.99□□□□□ -2.09
HMGB1-204ENST00000399489 COL6A5A8TX70 2615 aa1.99□□□□□ -2.09
HMGB1-204ENST00000399489 SPTY2D1-AS1A0A0U1RR47 76 aa1.99□□□□□ -2.09
HMGB1-204ENST00000399489 SNRPGP62308 76 aaKnown RBP1.99□□□□□ -2.09
HMGB1-204ENST00000399489 ZNF625Q96I27 306 aaPredicted RBP1.99□□□□□ -2.09
HMGB1-204ENST00000399489 RYR3Q15413 4870 aa1.99□□□□□ -2.09
HMGB1-204ENST00000399489 KMT2CQ8NEZ4 4911 aaKnown RBP1.98□□□□□ -2.09
HMGB1-204ENST00000399489 A0A1B0GU69 56 aa1.98□□□□□ -2.09
HMGB1-204ENST00000399489 M0R1W7 72 aa1.98□□□□□ -2.09
HMGB1-204ENST00000399489 NDUFA4O00483 81 aa1.98□□□□□ -2.09
HMGB1-204ENST00000399489 DEFB133Q30KQ1 61 aa1.98□□□□□ -2.09
HMGB1-204ENST00000399489 PRRC2CQ9Y520 2896 aaKnown RBP1.98□□□□□ -2.09
HMGB1-204ENST00000399489 ANK2Q01484 3957 aa1.98□□□□□ -2.09
HMGB1-204ENST00000399489 PKDREJQ9NTG1 2253 aa1.98□□□□□ -2.09
HMGB1-204ENST00000399489 SPRR5A0A1B0GTR4 108 aa1.97□□□□□ -2.09
HMGB1-204ENST00000399489 ARL14EPLP0DKL9 152 aa1.97□□□□□ -2.09
HMGB1-204ENST00000399489 DEFB109BQ30KR1 87 aa1.97□□□□□ -2.09
HMGB1-204ENST00000399489 NSD1Q96L73 2696 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-204ENST00000399489 SVEP1Q4LDE5 3571 aa1.97□□□□□ -2.09
HMGB1-204ENST00000399489 NCOA6Q14686 2063 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-204ENST00000399489 LINC00959A0A1B0GUT2 108 aa1.97□□□□□ -2.09
HMGB1-204ENST00000399489 I3L3M4 83 aa1.97□□□□□ -2.09
HMGB1-204ENST00000399489 Q6ZQY7 126 aa1.97□□□□□ -2.09
HMGB1-204ENST00000399489 IGIPA6NJ69 53 aa1.96□□□□□ -2.1
HMGB1-204ENST00000399489 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
HMGB1-204ENST00000399489 CCL19Q99731 98 aa1.96□□□□□ -2.1
HMGB1-204ENST00000399489 TIMM8BQ9Y5J9 83 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-204ENST00000399489 COX6B1P14854 86 aa1.95□□□□□ -2.1
HMGB1-204ENST00000399489 COX7BP24311 80 aa1.95□□□□□ -2.1
HMGB1-204ENST00000399489 LINC01546A6NGU7 62 aa1.94□□□□□ -2.1
HMGB1-204ENST00000399489 NCR3O14931 201 aa1.94□□□□□ -2.1
HMGB1-204ENST00000399489 SPINK4O60575 86 aa1.94□□□□□ -2.1
HMGB1-204ENST00000399489 DEFB114Q30KQ6 69 aa1.94□□□□□ -2.1
HMGB1-204ENST00000399489 FLNAP21333 2647 aaKnown RBP1.94□□□□□ -2.1
HMGB1-204ENST00000399489 MAP1AP78559 2803 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-204ENST00000399489 PRKDCP78527 4128 aaKnown RBP1.93□□□□□ -2.1
HMGB1-204ENST00000399489 HAMPP81172 84 aa1.93□□□□□ -2.1
HMGB1-204ENST00000399489 SMR3AQ99954 134 aa1.93□□□□□ -2.1
HMGB1-204ENST00000399489 MXRA5Q9NR99 2828 aa1.92□□□□□ -2.1
HMGB1-204ENST00000399489 TLN2Q9Y4G6 2542 aa1.92□□□□□ -2.1
HMGB1-204ENST00000399489 RPL38P63173 70 aaKnown RBP1.92□□□□□ -2.1
HMGB1-204ENST00000399489 KRTAP13-4Q3LI77 160 aa1.92□□□□□ -2.1
HMGB1-204ENST00000399489 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.92□□□□□ -2.1
HMGB1-204ENST00000399489 KCNQ1DNQ9H478 68 aa1.92□□□□□ -2.1
HMGB1-204ENST00000399489 AKAP6Q13023 2319 aa1.92□□□□□ -2.1
HMGB1-204ENST00000399489 BIRC6Q9NR09 4857 aa1.92□□□□□ -2.1
HMGB1-204ENST00000399489 ETDCA0A1B0GVM5 59 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms