RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 KRTAP16-1A8MUX0 517 aa9.74□□□□□ -0.85
SHANK1-204ENST00000391814 KRTAP1-3Q8IUG1 177 aa9.72□□□□□ -0.85
SHANK1-204ENST00000391814 Q6ZR54 194 aa9.71□□□□□ -0.86
SHANK1-204ENST00000391814 SPRR1BP22528 89 aa9.71□□□□□ -0.86
SHANK1-204ENST00000391814 EPG5Q9HCE0 2579 aa9.68□□□□□ -0.86
SHANK1-204ENST00000391814 ADM2Q7Z4H4 148 aa9.68□□□□□ -0.86
SHANK1-204ENST00000391814 KRTAP25-1Q3LHN0 102 aa9.67□□□□□ -0.86
SHANK1-204ENST00000391814 PLAC8Q9NZF1 115 aa9.66□□□□□ -0.86
SHANK1-204ENST00000391814 HECTD1Q9ULT8 2610 aa9.65□□□□□ -0.86
SHANK1-204ENST00000391814 KRTAP29-1A8MX34 341 aaPredicted RBP9.65□□□□□ -0.87
SHANK1-204ENST00000391814 PLAC4Q8WY50 150 aa9.64□□□□□ -0.87
SHANK1-204ENST00000391814 A8MU10 97 aa9.64□□□□□ -0.87
SHANK1-204ENST00000391814 M0QZ58 72 aa9.63□□□□□ -0.87
SHANK1-204ENST00000391814 KRTAP1-1Q07627 177 aa9.63□□□□□ -0.87
SHANK1-204ENST00000391814 FLNBO75369 2602 aaKnown RBP9.6□□□□□ -0.87
SHANK1-204ENST00000391814 C5orf42Q9H799 3197 aa9.59□□□□□ -0.87
SHANK1-204ENST00000391814 USP24Q9UPU5 2620 aa9.56□□□□□ -0.88
SHANK1-204ENST00000391814 MGAM2Q2M2H8 2515 aa9.54□□□□□ -0.88
SHANK1-204ENST00000391814 KRTAP4-16G5E9R7 235 aaPredicted RBP9.51□□□□□ -0.89
SHANK1-204ENST00000391814 NDUFAF8A1L188 74 aa9.5□□□□□ -0.89
SHANK1-204ENST00000391814 PRRC2CQ9Y520 2896 aaKnown RBP9.5□□□□□ -0.89
SHANK1-204ENST00000391814 A0A087X002 238 aa9.49□□□□□ -0.89
SHANK1-204ENST00000391814 NOTCH2NLQ7Z3S9 236 aa9.49□□□□□ -0.89
SHANK1-204ENST00000391814 KRTAP1-5Q9BYS1 174 aa9.46□□□□□ -0.89
SHANK1-204ENST00000391814 LCE6AA0A183 80 aa9.45□□□□□ -0.9
SHANK1-204ENST00000391814 PANO1I0J062 215 aa9.43□□□□□ -0.9
SHANK1-204ENST00000391814 C20orf166-AS1Q96NR2 134 aa9.41□□□□□ -0.9
SHANK1-204ENST00000391814 CEP350Q5VT06 3117 aa9.39□□□□□ -0.91
SHANK1-204ENST00000391814 SEC61BP60468 96 aaKnown RBP9.38□□□□□ -0.91
SHANK1-204ENST00000391814 XIRP2A4UGR9 3374 aa9.36□□□□□ -0.91
SHANK1-204ENST00000391814 FLNAP21333 2647 aaKnown RBP9.29□□□□□ -0.92
SHANK1-204ENST00000391814 ATRQ13535 2644 aa9.29□□□□□ -0.92
SHANK1-204ENST00000391814 A8MUU9 505 aa9.27□□□□□ -0.93
SHANK1-204ENST00000391814 KRTAP11-1Q8IUC1 163 aa9.26□□□□□ -0.93
SHANK1-204ENST00000391814 ITPR3Q14573 2671 aa9.26□□□□□ -0.93
SHANK1-204ENST00000391814 KRTAP10-1P60331 282 aa9.25□□□□□ -0.93
SHANK1-204ENST00000391814 KRTAP10-2P60368 255 aa9.24□□□□□ -0.93
SHANK1-204ENST00000391814 FLG2Q5D862 2391 aaPredicted RBP9.23□□□□□ -0.93
SHANK1-204ENST00000391814 MAST4O15021 2626 aa9.22□□□□□ -0.93
SHANK1-204ENST00000391814 HELZ2Q9BYK8 2649 aaKnown RBP9.21□□□□□ -0.93
SHANK1-204ENST00000391814 KRTAP7-1Q8IUC3 87 aa9.18□□□□□ -0.94
SHANK1-204ENST00000391814 MKI67P46013 3256 aaKnown RBP9.17□□□□□ -0.94
SHANK1-204ENST00000391814 CHD7Q9P2D1 2997 aa9.16□□□□□ -0.94
SHANK1-204ENST00000391814 CFAP46Q8IYW2 2715 aa9.14□□□□□ -0.95
SHANK1-204ENST00000391814 C10orf95Q9H7T3 257 aa9.12□□□□□ -0.95
SHANK1-204ENST00000391814 DNAH14Q0VDD8 3507 aa9.1□□□□□ -0.95
SHANK1-204ENST00000391814 SZT2Q5T011 3432 aa9.1□□□□□ -0.95
SHANK1-204ENST00000391814 CDH23Q9H251 3354 aa9.09□□□□□ -0.95
SHANK1-204ENST00000391814 A0A0C4DFX4 3053 aa9.08□□□□□ -0.96
SHANK1-204ENST00000391814 CFAP54Q96N23 3096 aa9.07□□□□□ -0.96
SHANK1-204ENST00000391814 CENPEQ02224 2701 aa9□□□□□ -0.97
SHANK1-204ENST00000391814 CELSR3Q9NYQ7 3312 aa8.99□□□□□ -0.97
SHANK1-204ENST00000391814 RANBP2P49792 3224 aaKnown RBP8.99□□□□□ -0.97
SHANK1-204ENST00000391814 LAMA3Q16787 3333 aa8.98□□□□□ -0.97
SHANK1-204ENST00000391814 BRCA2P51587 3418 aa8.95□□□□□ -0.98
SHANK1-204ENST00000391814 KRTAP13-1Q8IUC0 172 aa8.95□□□□□ -0.98
SHANK1-204ENST00000391814 KRTAP13-2Q52LG2 175 aa8.94□□□□□ -0.98
SHANK1-204ENST00000391814 TEP1Q99973 2627 aaKnown RBP8.94□□□□□ -0.98
SHANK1-204ENST00000391814 MGAQ8IWI9 3026 aa8.93□□□□□ -0.98
SHANK1-204ENST00000391814 TEX15Q9BXT5 2789 aa8.91□□□□□ -0.98
SHANK1-204ENST00000391814 DMBT1Q9UGM3 2413 aaPredicted RBP8.91□□□□□ -0.98
SHANK1-204ENST00000391814 RPS29P62273 56 aaKnown RBP8.9□□□□□ -0.98
SHANK1-204ENST00000391814 HTTP42858 3142 aa8.89□□□□□ -0.99
SHANK1-204ENST00000391814 CHD9Q3L8U1 2897 aa8.89□□□□□ -0.99
SHANK1-204ENST00000391814 STAB1Q9NY15 2570 aa8.89□□□□□ -0.99
SHANK1-204ENST00000391814 AKAP13Q12802 2813 aa8.88□□□□□ -0.99
SHANK1-204ENST00000391814 H0YAA0 97 aa8.88□□□□□ -0.99
SHANK1-204ENST00000391814 TRIOO75962 3097 aa8.87□□□□□ -0.99
SHANK1-204ENST00000391814 CHD6Q8TD26 2715 aa8.87□□□□□ -0.99
SHANK1-204ENST00000391814 TNP1P09430 55 aa8.86□□□□□ -0.99
SHANK1-204ENST00000391814 SETXQ7Z333 2677 aaKnown RBP8.85□□□□□ -0.99
SHANK1-204ENST00000391814 FREM2Q5SZK8 3169 aa8.83□□□□□ -1
SHANK1-204ENST00000391814 Q6ZRN7 208 aaPredicted RBP8.83□□□□□ -1
SHANK1-204ENST00000391814 LAMA2P24043 3122 aaKnown RBP8.81□□□□□ -1
SHANK1-204ENST00000391814 PRUNE2Q8WUY3 3088 aa8.81□□□□□ -1
SHANK1-204ENST00000391814 WDFY4Q6ZS81 3184 aa8.8□□□□□ -1
SHANK1-204ENST00000391814 A0A1B0GVY2 172 aa8.78□□□□□ -1
SHANK1-204ENST00000391814 UNC80Q8N2C7 3258 aa8.75□□□□□ -1.01
SHANK1-204ENST00000391814 NBEAL1Q6ZS30 2694 aa8.74□□□□□ -1.01
SHANK1-204ENST00000391814 REV3LO60673 3130 aa8.72□□□□□ -1.01
SHANK1-204ENST00000391814 P0C880 135 aa8.72□□□□□ -1.01
SHANK1-204ENST00000391814 USP34Q70CQ2 3546 aa8.7□□□□□ -1.02
SHANK1-204ENST00000391814 COL6A5A8TX70 2615 aa8.7□□□□□ -1.02
SHANK1-204ENST00000391814 STAB2Q8WWQ8 2551 aa8.7□□□□□ -1.02
SHANK1-204ENST00000391814 KRTAP10-8P60410 259 aa8.67□□□□□ -1.02
SHANK1-204ENST00000391814 BAHCC1Q9P281 2608 aa8.66□□□□□ -1.02
SHANK1-204ENST00000391814 MYO15AQ9UKN7 3530 aa8.65□□□□□ -1.02
SHANK1-204ENST00000391814 UNC79Q9P2D8 2635 aa8.65□□□□□ -1.03
SHANK1-204ENST00000391814 PP632Q6XCG6 107 aa8.64□□□□□ -1.03
SHANK1-204ENST00000391814 GCN1Q92616 2671 aaKnown RBP8.63□□□□□ -1.03
SHANK1-204ENST00000391814 DSPP15924 2871 aaKnown RBP8.63□□□□□ -1.03
SHANK1-204ENST00000391814 ZNF292O60281 2723 aa8.61□□□□□ -1.03
SHANK1-204ENST00000391814 COL6A3P12111 3177 aa8.61□□□□□ -1.03
SHANK1-204ENST00000391814 TRANK1O15050 2925 aa8.6□□□□□ -1.03
SHANK1-204ENST00000391814 VPS13AQ96RL7 3174 aa8.59□□□□□ -1.03
SHANK1-204ENST00000391814 FRYQ5TBA9 3013 aa8.59□□□□□ -1.03
SHANK1-204ENST00000391814 NOTCH1P46531 2555 aa8.58□□□□□ -1.04
SHANK1-204ENST00000391814 NBEAL2Q6ZNJ1 2754 aa8.56□□□□□ -1.04
SHANK1-204ENST00000391814 MAP1AP78559 2803 aaPredicted RBP8.56□□□□□ -1.04
SHANK1-204ENST00000391814 IGSF10Q6WRI0 2623 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms