RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SPRR4Q96PI1 79 aa11.24□□□□□ -0.61
CLN3-206ENST00000360019 C14orf132Q9NPU4 83 aa11.24□□□□□ -0.61
CLN3-206ENST00000360019 RBM3P98179 157 aaKnown RBP11.21□□□□□ -0.61
CLN3-206ENST00000360019 PKHD1L1Q86WI1 4243 aa11.21□□□□□ -0.61
CLN3-206ENST00000360019 CDK2AP2O75956 126 aa11.21□□□□□ -0.62
CLN3-206ENST00000360019 ZNF706Q9Y5V0 76 aaPredicted RBP11.21□□□□□ -0.62
CLN3-206ENST00000360019 LINC00483Q53H64 154 aa11.2□□□□□ -0.62
CLN3-206ENST00000360019 KRTAP10-4P60372 401 aaPredicted RBP11.18□□□□□ -0.62
CLN3-206ENST00000360019 TRBV7-4A0A0J9YYF1 115 aa11.16□□□□□ -0.62
CLN3-206ENST00000360019 ANAPC11Q9NYG5 84 aa11.16□□□□□ -0.62
CLN3-206ENST00000360019 K7ERU9 68 aa11.16□□□□□ -0.62
CLN3-206ENST00000360019 DSCR8Q96T75 97 aa11.16□□□□□ -0.62
CLN3-206ENST00000360019 LOC110117498A0A087WWA1 95 aa11.14□□□□□ -0.63
CLN3-206ENST00000360019 J3QR89 54 aa11.14□□□□□ -0.63
CLN3-206ENST00000360019 Q6ZQT0 140 aa11.14□□□□□ -0.63
CLN3-206ENST00000360019 F8WEM9 126 aa11.14□□□□□ -0.63
CLN3-206ENST00000360019 IGLV8-61A0A075B6I0 122 aa11.12□□□□□ -0.63
CLN3-206ENST00000360019 CCKP06307 115 aa11.11□□□□□ -0.63
CLN3-206ENST00000360019 SPINK6Q6UWN8 80 aa11.1□□□□□ -0.63
CLN3-206ENST00000360019 BIRC6Q9NR09 4857 aa11.1□□□□□ -0.63
CLN3-206ENST00000360019 PDE6GP18545 87 aa11.09□□□□□ -0.63
CLN3-206ENST00000360019 IGLV9-49A0A0B4J1Y8 123 aa11.09□□□□□ -0.63
CLN3-206ENST00000360019 A0A0G2JQZ4 141 aa11.08□□□□□ -0.64
CLN3-206ENST00000360019 KRTAP1-4P0C5Y4 121 aa11.08□□□□□ -0.64
CLN3-206ENST00000360019 IGFL1Q6UW32 110 aa11.07□□□□□ -0.64
CLN3-206ENST00000360019 FAM229AH3BQW9 127 aa11.07□□□□□ -0.64
CLN3-206ENST00000360019 FAM240AA0A1B0GVK7 77 aa11.06□□□□□ -0.64
CLN3-206ENST00000360019 KRTAP17-1Q9BYP8 105 aa11.06□□□□□ -0.64
CLN3-206ENST00000360019 VPS25Q9BRG1 176 aa11.05□□□□□ -0.64
CLN3-206ENST00000360019 PLA2G1BP04054 148 aaKnown RBP11.05□□□□□ -0.64
CLN3-206ENST00000360019 C9orf153Q5TBE3 101 aa11.05□□□□□ -0.64
CLN3-206ENST00000360019 Q5VSD8 79 aa11.05□□□□□ -0.64
CLN3-206ENST00000360019 A0A087X002 238 aa11.04□□□□□ -0.64
CLN3-206ENST00000360019 A0A1W2PNM2 257 aa11.04□□□□□ -0.64
CLN3-206ENST00000360019 MOBPQ13875 183 aa11.03□□□□□ -0.64
CLN3-206ENST00000360019 Q6JHZ5 121 aa11.02□□□□□ -0.64
CLN3-206ENST00000360019 Q8NBF4 154 aa11.02□□□□□ -0.65
CLN3-206ENST00000360019 ACYP1P07311 99 aa11.01□□□□□ -0.65
CLN3-206ENST00000360019 FAM229BQ4G0N7 80 aa11.01□□□□□ -0.65
CLN3-206ENST00000360019 LRP1Q07954 4544 aaKnown RBP11.01□□□□□ -0.65
CLN3-206ENST00000360019 FAT3Q8TDW7 4589 aa11□□□□□ -0.65
CLN3-206ENST00000360019 LINC00846Q9NV44 126 aa11□□□□□ -0.65
CLN3-206ENST00000360019 C21orf62-AS1Q17RA5 79 aa10.99□□□□□ -0.65
CLN3-206ENST00000360019 KRTAP13-2Q52LG2 175 aa10.99□□□□□ -0.65
CLN3-206ENST00000360019 CDIP1Q9H305 208 aa10.99□□□□□ -0.65
CLN3-206ENST00000360019 CRYGAP11844 174 aa10.96□□□□□ -0.65
CLN3-206ENST00000360019 Q8N1X5 172 aa10.95□□□□□ -0.66
CLN3-206ENST00000360019 TNXBP22105 4242 aa10.95□□□□□ -0.66
CLN3-206ENST00000360019 HERC2O95714 4834 aa10.95□□□□□ -0.66
CLN3-206ENST00000360019 Q6Q795 121 aa10.93□□□□□ -0.66
CLN3-206ENST00000360019 MYCBP2O75592 4640 aa10.92□□□□□ -0.66
CLN3-206ENST00000360019 SSBP3-AS1Q7Z2R9 100 aa10.92□□□□□ -0.66
CLN3-206ENST00000360019 A0A1B0GW54 56 aa10.91□□□□□ -0.66
CLN3-206ENST00000360019 PRR26Q8N8Z3 221 aa10.9□□□□□ -0.66
CLN3-206ENST00000360019 HRCT1Q6UXD1 115 aa10.89□□□□□ -0.67
CLN3-206ENST00000360019 A0A087WSZ3 146 aa10.88□□□□□ -0.67
CLN3-206ENST00000360019 Q6ZVQ6 151 aa10.87□□□□□ -0.67
CLN3-206ENST00000360019 UBL5Q9BZL1 73 aa10.87□□□□□ -0.67
CLN3-206ENST00000360019 TRBV7-7A0A0K0K1E9 115 aa10.86□□□□□ -0.67
CLN3-206ENST00000360019 TYMSOSQ8TAI1 123 aa10.86□□□□□ -0.67
CLN3-206ENST00000360019 ABCA13Q86UQ4 5058 aa10.85□□□□□ -0.67
CLN3-206ENST00000360019 LINC00643Q86TS7 51 aa10.83□□□□□ -0.68
CLN3-206ENST00000360019 CD164Q04900 197 aa10.81□□□□□ -0.68
CLN3-206ENST00000360019 NREPQ16612 68 aa10.81□□□□□ -0.68
CLN3-206ENST00000360019 FLG2Q5D862 2391 aaPredicted RBP10.81□□□□□ -0.68
CLN3-206ENST00000360019 MT-ATP8P03928 68 aa10.8□□□□□ -0.68
CLN3-206ENST00000360019 KRTAP4-5Q9BYR2 181 aa10.77□□□□□ -0.68
CLN3-206ENST00000360019 IGKV3D-7A0A0C4DH55 119 aa10.75□□□□□ -0.69
CLN3-206ENST00000360019 LINC00304Q8N9R0 145 aa10.74□□□□□ -0.69
CLN3-206ENST00000360019 SIGMAR1Q99720 223 aa10.74□□□□□ -0.69
CLN3-206ENST00000360019 SS18L2Q9UHA2 77 aa10.74□□□□□ -0.69
CLN3-206ENST00000360019 ATP5EP2Q5VTU8 51 aa10.72□□□□□ -0.69
CLN3-206ENST00000360019 LINC00472Q9H8W2 130 aa10.72□□□□□ -0.69
CLN3-206ENST00000360019 DEFB116Q30KQ4 102 aa10.72□□□□□ -0.69
CLN3-206ENST00000360019 C4orf48Q5BLP8 95 aa10.71□□□□□ -0.69
CLN3-206ENST00000360019 Q96NJ1 140 aa10.71□□□□□ -0.69
CLN3-206ENST00000360019 BPY2O14599 106 aa10.7□□□□□ -0.7
CLN3-206ENST00000360019 KRTAP10-8P60410 259 aa10.7□□□□□ -0.7
CLN3-206ENST00000360019 SPINK1P00995 79 aa10.7□□□□□ -0.7
CLN3-206ENST00000360019 CXCL6P80162 114 aa10.7□□□□□ -0.7
CLN3-206ENST00000360019 Q5XG85 94 aa10.69□□□□□ -0.7
CLN3-206ENST00000360019 SPAG11AQ6PDA7 123 aa10.68□□□□□ -0.7
CLN3-206ENST00000360019 DSCR10P59022 87 aa10.66□□□□□ -0.7
CLN3-206ENST00000360019 ASB16-AS1Q495Z4 193 aa10.65□□□□□ -0.7
CLN3-206ENST00000360019 Q8N9L7 120 aa10.65□□□□□ -0.71
CLN3-206ENST00000360019 LIMD2Q9BT23 127 aa10.65□□□□□ -0.71
CLN3-206ENST00000360019 RPS29P62273 56 aaKnown RBP10.63□□□□□ -0.71
CLN3-206ENST00000360019 IMUPQ9GZP8 106 aa10.62□□□□□ -0.71
CLN3-206ENST00000360019 MT1HL1P0DM35 61 aa10.61□□□□□ -0.71
CLN3-206ENST00000360019 HIST1H4AP62805 103 aaKnown RBP10.61□□□□□ -0.71
CLN3-206ENST00000360019 IGKV4-1P06312 121 aa10.61□□□□□ -0.71
CLN3-206ENST00000360019 A0A087WVE0 104 aa10.6□□□□□ -0.71
CLN3-206ENST00000360019 J3KT08 172 aa10.6□□□□□ -0.71
CLN3-206ENST00000360019 K7EQZ3 153 aa10.6□□□□□ -0.71
CLN3-206ENST00000360019 C1orf195Q5TG92 126 aa10.59□□□□□ -0.71
CLN3-206ENST00000360019 A8MWP4 228 aa10.56□□□□□ -0.72
CLN3-206ENST00000360019 OXTP01178 125 aa10.56□□□□□ -0.72
CLN3-206ENST00000360019 DMBT1Q9UGM3 2413 aaPredicted RBP10.56□□□□□ -0.72
CLN3-206ENST00000360019 PRR15Q8IV56 129 aa10.53□□□□□ -0.72
CLN3-206ENST00000360019 PCLOQ9Y6V0 5065 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms