RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 SEC61BP60468 96 aaKnown RBP11.03□□□□□ -0.64
SHANK1-202ENST00000359082 KRTAP26-1Q6PEX3 210 aa11.03□□□□□ -0.64
SHANK1-202ENST00000359082 OXTP01178 125 aa11.02□□□□□ -0.65
SHANK1-202ENST00000359082 SPRR1BP22528 89 aa11.02□□□□□ -0.65
SHANK1-202ENST00000359082 ROMO1P60602 79 aa11.01□□□□□ -0.65
SHANK1-202ENST00000359082 M0QZ58 72 aa11□□□□□ -0.65
SHANK1-202ENST00000359082 KRTAP1-5Q9BYS1 174 aa11□□□□□ -0.65
SHANK1-202ENST00000359082 BRCA2P51587 3418 aa10.98□□□□□ -0.65
SHANK1-202ENST00000359082 RPL37P61927 97 aaKnown RBP10.97□□□□□ -0.65
SHANK1-202ENST00000359082 H1FX-AS1Q4G0G2 97 aa10.97□□□□□ -0.65
SHANK1-202ENST00000359082 KRTAP10-1P60331 282 aa10.96□□□□□ -0.65
SHANK1-202ENST00000359082 CHD7Q9P2D1 2997 aa10.94□□□□□ -0.66
SHANK1-202ENST00000359082 KRTAP10-2P60368 255 aa10.94□□□□□ -0.66
SHANK1-202ENST00000359082 ADM2Q7Z4H4 148 aa10.92□□□□□ -0.66
SHANK1-202ENST00000359082 SPATA8Q6RVD6 105 aa10.9□□□□□ -0.66
SHANK1-202ENST00000359082 LAMA3Q16787 3333 aa10.89□□□□□ -0.67
SHANK1-202ENST00000359082 USP24Q9UPU5 2620 aa10.88□□□□□ -0.67
SHANK1-202ENST00000359082 PLAC4Q8WY50 150 aa10.86□□□□□ -0.67
SHANK1-202ENST00000359082 Q6ZR54 194 aa10.85□□□□□ -0.67
SHANK1-202ENST00000359082 PRRC2CQ9Y520 2896 aaKnown RBP10.85□□□□□ -0.67
SHANK1-202ENST00000359082 HTTP42858 3142 aa10.83□□□□□ -0.68
SHANK1-202ENST00000359082 BPTFQ12830 3046 aa10.83□□□□□ -0.68
SHANK1-202ENST00000359082 HELZ2Q9BYK8 2649 aaKnown RBP10.83□□□□□ -0.68
SHANK1-202ENST00000359082 MGAM2Q2M2H8 2515 aa10.82□□□□□ -0.68
SHANK1-202ENST00000359082 XIRP2A4UGR9 3374 aa10.81□□□□□ -0.68
SHANK1-202ENST00000359082 LCE6AA0A183 80 aa10.8□□□□□ -0.68
SHANK1-202ENST00000359082 ASB16-AS1Q495Z4 193 aa10.78□□□□□ -0.68
SHANK1-202ENST00000359082 FLNAP21333 2647 aaKnown RBP10.77□□□□□ -0.69
SHANK1-202ENST00000359082 PANO1I0J062 215 aa10.77□□□□□ -0.69
SHANK1-202ENST00000359082 RANBP2P49792 3224 aaKnown RBP10.73□□□□□ -0.69
SHANK1-202ENST00000359082 ITPR3Q14573 2671 aa10.72□□□□□ -0.69
SHANK1-202ENST00000359082 CDH23Q9H251 3354 aa10.72□□□□□ -0.69
SHANK1-202ENST00000359082 PRUNE2Q8WUY3 3088 aa10.69□□□□□ -0.7
SHANK1-202ENST00000359082 A0A087X002 238 aa10.69□□□□□ -0.7
SHANK1-202ENST00000359082 UNC80Q8N2C7 3258 aa10.66□□□□□ -0.7
SHANK1-202ENST00000359082 KRTAP4-16G5E9R7 235 aaPredicted RBP10.65□□□□□ -0.71
SHANK1-202ENST00000359082 CFAP54Q96N23 3096 aa10.65□□□□□ -0.71
SHANK1-202ENST00000359082 KRTAP29-1A8MX34 341 aaPredicted RBP10.64□□□□□ -0.71
SHANK1-202ENST00000359082 NOTCH2NLQ7Z3S9 236 aa10.63□□□□□ -0.71
SHANK1-202ENST00000359082 LAMA2P24043 3122 aaKnown RBP10.62□□□□□ -0.71
SHANK1-202ENST00000359082 KRTAP16-1A8MUX0 517 aa10.59□□□□□ -0.71
SHANK1-202ENST00000359082 CFAP46Q8IYW2 2715 aa10.58□□□□□ -0.72
SHANK1-202ENST00000359082 MAST4O15021 2626 aa10.57□□□□□ -0.72
SHANK1-202ENST00000359082 DNAH14Q0VDD8 3507 aa10.57□□□□□ -0.72
SHANK1-202ENST00000359082 CHD9Q3L8U1 2897 aa10.55□□□□□ -0.72
SHANK1-202ENST00000359082 A8MU10 97 aa10.55□□□□□ -0.72
SHANK1-202ENST00000359082 CELSR3Q9NYQ7 3312 aa10.54□□□□□ -0.72
SHANK1-202ENST00000359082 A6NN06 94 aa10.54□□□□□ -0.72
SHANK1-202ENST00000359082 ATRQ13535 2644 aa10.54□□□□□ -0.72
SHANK1-202ENST00000359082 C20orf166-AS1Q96NR2 134 aa10.51□□□□□ -0.73
SHANK1-202ENST00000359082 KRTAP25-1Q3LHN0 102 aa10.5□□□□□ -0.73
SHANK1-202ENST00000359082 KRTAP11-1Q8IUC1 163 aa10.5□□□□□ -0.73
SHANK1-202ENST00000359082 TRIOO75962 3097 aa10.49□□□□□ -0.73
SHANK1-202ENST00000359082 A8MUU9 505 aa10.49□□□□□ -0.73
SHANK1-202ENST00000359082 FLG2Q5D862 2391 aaPredicted RBP10.49□□□□□ -0.73
SHANK1-202ENST00000359082 A0A0C4DFX4 3053 aa10.46□□□□□ -0.73
SHANK1-202ENST00000359082 SZT2Q5T011 3432 aa10.45□□□□□ -0.74
SHANK1-202ENST00000359082 BAHCC1Q9P281 2608 aa10.42□□□□□ -0.74
SHANK1-202ENST00000359082 MGAQ8IWI9 3026 aa10.39□□□□□ -0.75
SHANK1-202ENST00000359082 WDFY4Q6ZS81 3184 aa10.38□□□□□ -0.75
SHANK1-202ENST00000359082 RPS29P62273 56 aaKnown RBP10.35□□□□□ -0.75
SHANK1-202ENST00000359082 SETXQ7Z333 2677 aaKnown RBP10.35□□□□□ -0.75
SHANK1-202ENST00000359082 NDUFAF8A1L188 74 aa10.3□□□□□ -0.76
SHANK1-202ENST00000359082 KRTAP7-1Q8IUC3 87 aa10.3□□□□□ -0.76
SHANK1-202ENST00000359082 KRTAP13-2Q52LG2 175 aa10.3□□□□□ -0.76
SHANK1-202ENST00000359082 Q6ZRN7 208 aaPredicted RBP10.29□□□□□ -0.76
SHANK1-202ENST00000359082 TEP1Q99973 2627 aaKnown RBP10.29□□□□□ -0.76
SHANK1-202ENST00000359082 TRANK1O15050 2925 aa10.27□□□□□ -0.77
SHANK1-202ENST00000359082 DMBT1Q9UGM3 2413 aaPredicted RBP10.26□□□□□ -0.77
SHANK1-202ENST00000359082 NBEAL1Q6ZS30 2694 aa10.24□□□□□ -0.77
SHANK1-202ENST00000359082 VCANP13611 3396 aa10.23□□□□□ -0.77
SHANK1-202ENST00000359082 AKAP13Q12802 2813 aa10.21□□□□□ -0.77
SHANK1-202ENST00000359082 COL6A3P12111 3177 aa10.21□□□□□ -0.78
SHANK1-202ENST00000359082 KRTAP21-3Q3LHN1 58 aa10.19□□□□□ -0.78
SHANK1-202ENST00000359082 STAB1Q9NY15 2570 aa10.19□□□□□ -0.78
SHANK1-202ENST00000359082 C10orf95Q9H7T3 257 aa10.19□□□□□ -0.78
SHANK1-202ENST00000359082 VPS13AQ96RL7 3174 aa10.18□□□□□ -0.78
SHANK1-202ENST00000359082 TNP1P09430 55 aa10.16□□□□□ -0.78
SHANK1-202ENST00000359082 CENPEQ02224 2701 aa10.16□□□□□ -0.78
SHANK1-202ENST00000359082 CHD6Q8TD26 2715 aa10.15□□□□□ -0.78
SHANK1-202ENST00000359082 KRTAP13-1Q8IUC0 172 aa10.15□□□□□ -0.78
SHANK1-202ENST00000359082 ZNF292O60281 2723 aa10.14□□□□□ -0.79
SHANK1-202ENST00000359082 TEX15Q9BXT5 2789 aa10.13□□□□□ -0.79
SHANK1-202ENST00000359082 LAMA1P25391 3075 aa10.12□□□□□ -0.79
SHANK1-202ENST00000359082 SPTBN5Q9NRC6 3674 aaKnown RBP10.11□□□□□ -0.79
SHANK1-202ENST00000359082 FREM2Q5SZK8 3169 aa10.11□□□□□ -0.79
SHANK1-202ENST00000359082 COL6A5A8TX70 2615 aa10.05□□□□□ -0.8
SHANK1-202ENST00000359082 UNC79Q9P2D8 2635 aa10.03□□□□□ -0.8
SHANK1-202ENST00000359082 GCN1Q92616 2671 aaKnown RBP10□□□□□ -0.81
SHANK1-202ENST00000359082 FRYQ5TBA9 3013 aa9.98□□□□□ -0.81
SHANK1-202ENST00000359082 A0A1B0GVY2 172 aa9.96□□□□□ -0.82
SHANK1-202ENST00000359082 SPEGQ15772 3267 aa9.94□□□□□ -0.82
SHANK1-202ENST00000359082 EYSQ5T1H1 3165 aa9.93□□□□□ -0.82
SHANK1-202ENST00000359082 IGSF10Q6WRI0 2623 aa9.93□□□□□ -0.82
SHANK1-202ENST00000359082 NOTCH1P46531 2555 aa9.92□□□□□ -0.82
SHANK1-202ENST00000359082 STAB2Q8WWQ8 2551 aa9.92□□□□□ -0.82
SHANK1-202ENST00000359082 KRTAP10-8P60410 259 aa9.91□□□□□ -0.82
SHANK1-202ENST00000359082 USP34Q70CQ2 3546 aa9.89□□□□□ -0.83
SHANK1-202ENST00000359082 DSPP15924 2871 aaKnown RBP9.89□□□□□ -0.83
SHANK1-202ENST00000359082 KMT2BQ9UMN6 2715 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms