RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 SEC61BP60468 96 aaKnown RBP11.03□□□□□ -0.64
SHANK1-202ENST00000359082 KRTAP26-1Q6PEX3 210 aa11.03□□□□□ -0.64
SHANK1-202ENST00000359082 OXTP01178 125 aa11.02□□□□□ -0.65
SHANK1-202ENST00000359082 SPRR1BP22528 89 aa11.02□□□□□ -0.65
SHANK1-202ENST00000359082 ROMO1P60602 79 aa11.01□□□□□ -0.65
SHANK1-202ENST00000359082 M0QZ58 72 aa11□□□□□ -0.65
SHANK1-202ENST00000359082 KRTAP1-5Q9BYS1 174 aa11□□□□□ -0.65
SHANK1-202ENST00000359082 BRCA2P51587 3418 aa10.98□□□□□ -0.65
SHANK1-202ENST00000359082 RPL37P61927 97 aaKnown RBP10.97□□□□□ -0.65
SHANK1-202ENST00000359082 H1FX-AS1Q4G0G2 97 aa10.97□□□□□ -0.65
SHANK1-202ENST00000359082 KRTAP10-1P60331 282 aa10.96□□□□□ -0.65
SHANK1-202ENST00000359082 CHD7Q9P2D1 2997 aa10.94□□□□□ -0.66
SHANK1-202ENST00000359082 KRTAP10-2P60368 255 aa10.94□□□□□ -0.66
SHANK1-202ENST00000359082 ADM2Q7Z4H4 148 aa10.92□□□□□ -0.66
SHANK1-202ENST00000359082 SPATA8Q6RVD6 105 aa10.9□□□□□ -0.66
SHANK1-202ENST00000359082 LAMA3Q16787 3333 aa10.89□□□□□ -0.67
SHANK1-202ENST00000359082 USP24Q9UPU5 2620 aa10.88□□□□□ -0.67
SHANK1-202ENST00000359082 PLAC4Q8WY50 150 aa10.86□□□□□ -0.67
SHANK1-202ENST00000359082 Q6ZR54 194 aa10.85□□□□□ -0.67
SHANK1-202ENST00000359082 PRRC2CQ9Y520 2896 aaKnown RBP10.85□□□□□ -0.67
SHANK1-202ENST00000359082 HTTP42858 3142 aa10.83□□□□□ -0.68
SHANK1-202ENST00000359082 BPTFQ12830 3046 aa10.83□□□□□ -0.68
SHANK1-202ENST00000359082 HELZ2Q9BYK8 2649 aaKnown RBP10.83□□□□□ -0.68
SHANK1-202ENST00000359082 MGAM2Q2M2H8 2515 aa10.82□□□□□ -0.68
SHANK1-202ENST00000359082 XIRP2A4UGR9 3374 aa10.81□□□□□ -0.68
SHANK1-202ENST00000359082 LCE6AA0A183 80 aa10.8□□□□□ -0.68
SHANK1-202ENST00000359082 ASB16-AS1Q495Z4 193 aa10.78□□□□□ -0.68
SHANK1-202ENST00000359082 FLNAP21333 2647 aaKnown RBP10.77□□□□□ -0.69
SHANK1-202ENST00000359082 PANO1I0J062 215 aa10.77□□□□□ -0.69
SHANK1-202ENST00000359082 RANBP2P49792 3224 aaKnown RBP10.73□□□□□ -0.69
SHANK1-202ENST00000359082 ITPR3Q14573 2671 aa10.72□□□□□ -0.69
SHANK1-202ENST00000359082 CDH23Q9H251 3354 aa10.72□□□□□ -0.69
SHANK1-202ENST00000359082 PRUNE2Q8WUY3 3088 aa10.69□□□□□ -0.7
SHANK1-202ENST00000359082 A0A087X002 238 aa10.69□□□□□ -0.7
SHANK1-202ENST00000359082 UNC80Q8N2C7 3258 aa10.66□□□□□ -0.7
SHANK1-202ENST00000359082 KRTAP4-16G5E9R7 235 aaPredicted RBP10.65□□□□□ -0.71
SHANK1-202ENST00000359082 CFAP54Q96N23 3096 aa10.65□□□□□ -0.71
SHANK1-202ENST00000359082 KRTAP29-1A8MX34 341 aaPredicted RBP10.64□□□□□ -0.71
SHANK1-202ENST00000359082 NOTCH2NLQ7Z3S9 236 aa10.63□□□□□ -0.71
SHANK1-202ENST00000359082 LAMA2P24043 3122 aaKnown RBP10.62□□□□□ -0.71
SHANK1-202ENST00000359082 KRTAP16-1A8MUX0 517 aa10.59□□□□□ -0.71
SHANK1-202ENST00000359082 CFAP46Q8IYW2 2715 aa10.58□□□□□ -0.72
SHANK1-202ENST00000359082 MAST4O15021 2626 aa10.57□□□□□ -0.72
SHANK1-202ENST00000359082 DNAH14Q0VDD8 3507 aa10.57□□□□□ -0.72
SHANK1-202ENST00000359082 CHD9Q3L8U1 2897 aa10.55□□□□□ -0.72
SHANK1-202ENST00000359082 A8MU10 97 aa10.55□□□□□ -0.72
SHANK1-202ENST00000359082 CELSR3Q9NYQ7 3312 aa10.54□□□□□ -0.72
SHANK1-202ENST00000359082 A6NN06 94 aa10.54□□□□□ -0.72
SHANK1-202ENST00000359082 ATRQ13535 2644 aa10.54□□□□□ -0.72
SHANK1-202ENST00000359082 C20orf166-AS1Q96NR2 134 aa10.51□□□□□ -0.73
SHANK1-202ENST00000359082 KRTAP25-1Q3LHN0 102 aa10.5□□□□□ -0.73
SHANK1-202ENST00000359082 KRTAP11-1Q8IUC1 163 aa10.5□□□□□ -0.73
SHANK1-202ENST00000359082 TRIOO75962 3097 aa10.49□□□□□ -0.73
SHANK1-202ENST00000359082 A8MUU9 505 aa10.49□□□□□ -0.73
SHANK1-202ENST00000359082 FLG2Q5D862 2391 aaPredicted RBP10.49□□□□□ -0.73
SHANK1-202ENST00000359082 A0A0C4DFX4 3053 aa10.46□□□□□ -0.73
SHANK1-202ENST00000359082 SZT2Q5T011 3432 aa10.45□□□□□ -0.74
SHANK1-202ENST00000359082 BAHCC1Q9P281 2608 aa10.42□□□□□ -0.74
SHANK1-202ENST00000359082 MGAQ8IWI9 3026 aa10.39□□□□□ -0.75
SHANK1-202ENST00000359082 WDFY4Q6ZS81 3184 aa10.38□□□□□ -0.75
SHANK1-202ENST00000359082 RPS29P62273 56 aaKnown RBP10.35□□□□□ -0.75
SHANK1-202ENST00000359082 SETXQ7Z333 2677 aaKnown RBP10.35□□□□□ -0.75
SHANK1-202ENST00000359082 NDUFAF8A1L188 74 aa10.3□□□□□ -0.76
SHANK1-202ENST00000359082 KRTAP7-1Q8IUC3 87 aa10.3□□□□□ -0.76
SHANK1-202ENST00000359082 KRTAP13-2Q52LG2 175 aa10.3□□□□□ -0.76
SHANK1-202ENST00000359082 Q6ZRN7 208 aaPredicted RBP10.29□□□□□ -0.76
SHANK1-202ENST00000359082 TEP1Q99973 2627 aaKnown RBP10.29□□□□□ -0.76
SHANK1-202ENST00000359082 TRANK1O15050 2925 aa10.27□□□□□ -0.77
SHANK1-202ENST00000359082 DMBT1Q9UGM3 2413 aaPredicted RBP10.26□□□□□ -0.77
SHANK1-202ENST00000359082 NBEAL1Q6ZS30 2694 aa10.24□□□□□ -0.77
SHANK1-202ENST00000359082 VCANP13611 3396 aa10.23□□□□□ -0.77
SHANK1-202ENST00000359082 AKAP13Q12802 2813 aa10.21□□□□□ -0.77
SHANK1-202ENST00000359082 COL6A3P12111 3177 aa10.21□□□□□ -0.78
SHANK1-202ENST00000359082 KRTAP21-3Q3LHN1 58 aa10.19□□□□□ -0.78
SHANK1-202ENST00000359082 STAB1Q9NY15 2570 aa10.19□□□□□ -0.78
SHANK1-202ENST00000359082 C10orf95Q9H7T3 257 aa10.19□□□□□ -0.78
SHANK1-202ENST00000359082 VPS13AQ96RL7 3174 aa10.18□□□□□ -0.78
SHANK1-202ENST00000359082 TNP1P09430 55 aa10.16□□□□□ -0.78
SHANK1-202ENST00000359082 CENPEQ02224 2701 aa10.16□□□□□ -0.78
SHANK1-202ENST00000359082 CHD6Q8TD26 2715 aa10.15□□□□□ -0.78
SHANK1-202ENST00000359082 KRTAP13-1Q8IUC0 172 aa10.15□□□□□ -0.78
SHANK1-202ENST00000359082 ZNF292O60281 2723 aa10.14□□□□□ -0.79
SHANK1-202ENST00000359082 TEX15Q9BXT5 2789 aa10.13□□□□□ -0.79
SHANK1-202ENST00000359082 LAMA1P25391 3075 aa10.12□□□□□ -0.79
SHANK1-202ENST00000359082 SPTBN5Q9NRC6 3674 aaKnown RBP10.11□□□□□ -0.79
SHANK1-202ENST00000359082 FREM2Q5SZK8 3169 aa10.11□□□□□ -0.79
SHANK1-202ENST00000359082 COL6A5A8TX70 2615 aa10.05□□□□□ -0.8
SHANK1-202ENST00000359082 UNC79Q9P2D8 2635 aa10.03□□□□□ -0.8
SHANK1-202ENST00000359082 GCN1Q92616 2671 aaKnown RBP10□□□□□ -0.81
SHANK1-202ENST00000359082 FRYQ5TBA9 3013 aa9.98□□□□□ -0.81
SHANK1-202ENST00000359082 A0A1B0GVY2 172 aa9.96□□□□□ -0.82
SHANK1-202ENST00000359082 SPEGQ15772 3267 aa9.94□□□□□ -0.82
SHANK1-202ENST00000359082 EYSQ5T1H1 3165 aa9.93□□□□□ -0.82
SHANK1-202ENST00000359082 IGSF10Q6WRI0 2623 aa9.93□□□□□ -0.82
SHANK1-202ENST00000359082 NOTCH1P46531 2555 aa9.92□□□□□ -0.82
SHANK1-202ENST00000359082 STAB2Q8WWQ8 2551 aa9.92□□□□□ -0.82
SHANK1-202ENST00000359082 KRTAP10-8P60410 259 aa9.91□□□□□ -0.82
SHANK1-202ENST00000359082 USP34Q70CQ2 3546 aa9.89□□□□□ -0.83
SHANK1-202ENST00000359082 DSPP15924 2871 aaKnown RBP9.89□□□□□ -0.83
SHANK1-202ENST00000359082 KMT2BQ9UMN6 2715 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms