RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 RPL37AP61513 92 aaKnown RBP11.29□□□□□ -0.6
CLN3-204ENST00000357857 APOBP04114 4563 aaKnown RBP11.29□□□□□ -0.6
CLN3-204ENST00000357857 TRBV7-4A0A0J9YYF1 115 aa11.29□□□□□ -0.6
CLN3-204ENST00000357857 SMR3BP02814 79 aaPredicted RBP11.29□□□□□ -0.6
CLN3-204ENST00000357857 EPPK1P58107 5090 aaKnown RBP11.28□□□□□ -0.6
CLN3-204ENST00000357857 PDE6GP18545 87 aa11.28□□□□□ -0.6
CLN3-204ENST00000357857 LINC00483Q53H64 154 aa11.28□□□□□ -0.6
CLN3-204ENST00000357857 Q6ZQT0 140 aa11.28□□□□□ -0.6
CLN3-204ENST00000357857 CCKP06307 115 aa11.27□□□□□ -0.61
CLN3-204ENST00000357857 FAM240AA0A1B0GVK7 77 aa11.25□□□□□ -0.61
CLN3-204ENST00000357857 IGLV8-61A0A075B6I0 122 aa11.23□□□□□ -0.61
CLN3-204ENST00000357857 ACYP1P07311 99 aa11.23□□□□□ -0.61
CLN3-204ENST00000357857 VPS13BQ7Z7G8 4022 aa11.23□□□□□ -0.61
CLN3-204ENST00000357857 C21orf62-AS1Q17RA5 79 aa11.22□□□□□ -0.61
CLN3-204ENST00000357857 VPS25Q9BRG1 176 aa11.21□□□□□ -0.62
CLN3-204ENST00000357857 CDK2AP2O75956 126 aa11.2□□□□□ -0.62
CLN3-204ENST00000357857 ANAPC11Q9NYG5 84 aa11.2□□□□□ -0.62
CLN3-204ENST00000357857 IGLV9-49A0A0B4J1Y8 123 aa11.18□□□□□ -0.62
CLN3-204ENST00000357857 IGFL1Q6UW32 110 aa11.18□□□□□ -0.62
CLN3-204ENST00000357857 Q6JHZ5 121 aa11.17□□□□□ -0.62
CLN3-204ENST00000357857 CDIP1Q9H305 208 aa11.17□□□□□ -0.62
CLN3-204ENST00000357857 C9orf153Q5TBE3 101 aa11.16□□□□□ -0.62
CLN3-204ENST00000357857 SPINK6Q6UWN8 80 aa11.16□□□□□ -0.62
CLN3-204ENST00000357857 BIRC6Q9NR09 4857 aa11.16□□□□□ -0.62
CLN3-204ENST00000357857 A0A1W2PNM2 257 aa11.15□□□□□ -0.63
CLN3-204ENST00000357857 KRTAP10-4P60372 401 aaPredicted RBP11.15□□□□□ -0.63
CLN3-204ENST00000357857 A0A0G2JQZ4 141 aa11.14□□□□□ -0.63
CLN3-204ENST00000357857 Q8NBF4 154 aa11.14□□□□□ -0.63
CLN3-204ENST00000357857 LINC00846Q9NV44 126 aa11.13□□□□□ -0.63
CLN3-204ENST00000357857 MOBPQ13875 183 aa11.12□□□□□ -0.63
CLN3-204ENST00000357857 FAM229AH3BQW9 127 aa11.11□□□□□ -0.63
CLN3-204ENST00000357857 PLA2G1BP04054 148 aaKnown RBP11.1□□□□□ -0.63
CLN3-204ENST00000357857 FAM229BQ4G0N7 80 aa11.1□□□□□ -0.63
CLN3-204ENST00000357857 KRTAP1-4P0C5Y4 121 aa11.09□□□□□ -0.63
CLN3-204ENST00000357857 FAT1Q14517 4588 aa11.08□□□□□ -0.64
CLN3-204ENST00000357857 A0A1B0GW54 56 aa11.08□□□□□ -0.64
CLN3-204ENST00000357857 CRYGAP11844 174 aa11.06□□□□□ -0.64
CLN3-204ENST00000357857 A0A087X002 238 aa11.06□□□□□ -0.64
CLN3-204ENST00000357857 UBL5Q9BZL1 73 aa11.06□□□□□ -0.64
CLN3-204ENST00000357857 HSPG2P98160 4391 aa11.05□□□□□ -0.64
CLN3-204ENST00000357857 PCP4P48539 62 aa11.04□□□□□ -0.64
CLN3-204ENST00000357857 Q5VSD8 79 aa11.04□□□□□ -0.64
CLN3-204ENST00000357857 Q6Q795 121 aa11.04□□□□□ -0.64
CLN3-204ENST00000357857 KRTAP13-2Q52LG2 175 aa11.03□□□□□ -0.64
CLN3-204ENST00000357857 SSBP3-AS1Q7Z2R9 100 aa11.03□□□□□ -0.64
CLN3-204ENST00000357857 LINC00643Q86TS7 51 aa11.03□□□□□ -0.64
CLN3-204ENST00000357857 Q6ZVQ6 151 aa11.01□□□□□ -0.65
CLN3-204ENST00000357857 A0A087WSZ3 146 aa10.99□□□□□ -0.65
CLN3-204ENST00000357857 RYR1P21817 5038 aa10.99□□□□□ -0.65
CLN3-204ENST00000357857 MT-ATP8P03928 68 aa10.98□□□□□ -0.65
CLN3-204ENST00000357857 NREPQ16612 68 aa10.98□□□□□ -0.65
CLN3-204ENST00000357857 SIGMAR1Q99720 223 aa10.98□□□□□ -0.65
CLN3-204ENST00000357857 TRBV7-7A0A0K0K1E9 115 aa10.98□□□□□ -0.65
CLN3-204ENST00000357857 HRCT1Q6UXD1 115 aa10.98□□□□□ -0.65
CLN3-204ENST00000357857 PKHD1L1Q86WI1 4243 aa10.97□□□□□ -0.65
CLN3-204ENST00000357857 Q8N1X5 172 aa10.94□□□□□ -0.66
CLN3-204ENST00000357857 TYMSOSQ8TAI1 123 aa10.94□□□□□ -0.66
CLN3-204ENST00000357857 KRTAP17-1Q9BYP8 105 aa10.94□□□□□ -0.66
CLN3-204ENST00000357857 CD164Q04900 197 aa10.93□□□□□ -0.66
CLN3-204ENST00000357857 PRR26Q8N8Z3 221 aa10.93□□□□□ -0.66
CLN3-204ENST00000357857 IGKV3D-7A0A0C4DH55 119 aa10.92□□□□□ -0.66
CLN3-204ENST00000357857 ATP5EP2Q5VTU8 51 aa10.92□□□□□ -0.66
CLN3-204ENST00000357857 KIAA1109Q2LD37 5005 aa10.89□□□□□ -0.67
CLN3-204ENST00000357857 SS18L2Q9UHA2 77 aa10.88□□□□□ -0.67
CLN3-204ENST00000357857 CXCL6P80162 114 aa10.87□□□□□ -0.67
CLN3-204ENST00000357857 BPY2O14599 106 aa10.87□□□□□ -0.67
CLN3-204ENST00000357857 IMUPQ9GZP8 106 aa10.84□□□□□ -0.67
CLN3-204ENST00000357857 C4orf48Q5BLP8 95 aa10.83□□□□□ -0.68
CLN3-204ENST00000357857 LINC00472Q9H8W2 130 aa10.82□□□□□ -0.68
CLN3-204ENST00000357857 DEFB116Q30KQ4 102 aa10.81□□□□□ -0.68
CLN3-204ENST00000357857 HERC2O95714 4834 aa10.81□□□□□ -0.68
CLN3-204ENST00000357857 LINC00304Q8N9R0 145 aa10.81□□□□□ -0.68
CLN3-204ENST00000357857 HIST1H4AP62805 103 aaKnown RBP10.79□□□□□ -0.68
CLN3-204ENST00000357857 Q96NJ1 140 aa10.78□□□□□ -0.68
CLN3-204ENST00000357857 SPINK1P00995 79 aa10.78□□□□□ -0.68
CLN3-204ENST00000357857 DSCR10P59022 87 aa10.77□□□□□ -0.69
CLN3-204ENST00000357857 Q5XG85 94 aa10.77□□□□□ -0.69
CLN3-204ENST00000357857 SPAG11AQ6PDA7 123 aa10.77□□□□□ -0.69
CLN3-204ENST00000357857 LIMD2Q9BT23 127 aa10.77□□□□□ -0.69
CLN3-204ENST00000357857 ASB16-AS1Q495Z4 193 aa10.76□□□□□ -0.69
CLN3-204ENST00000357857 Q8N9L7 120 aa10.75□□□□□ -0.69
CLN3-204ENST00000357857 J3KT08 172 aa10.75□□□□□ -0.69
CLN3-204ENST00000357857 A0A087WVE0 104 aa10.73□□□□□ -0.69
CLN3-204ENST00000357857 IGKV4-1P06312 121 aa10.73□□□□□ -0.69
CLN3-204ENST00000357857 KRTAP10-8P60410 259 aa10.72□□□□□ -0.69
CLN3-204ENST00000357857 RPS29P62273 56 aaKnown RBP10.72□□□□□ -0.69
CLN3-204ENST00000357857 K7EQZ3 153 aa10.7□□□□□ -0.7
CLN3-204ENST00000357857 SCGB1A1P11684 91 aa10.7□□□□□ -0.7
CLN3-204ENST00000357857 A8MWP4 228 aa10.69□□□□□ -0.7
CLN3-204ENST00000357857 KRTAP4-5Q9BYR2 181 aa10.69□□□□□ -0.7
CLN3-204ENST00000357857 FLG2Q5D862 2391 aaPredicted RBP10.69□□□□□ -0.7
CLN3-204ENST00000357857 FAM236AA0A1B0GUQ0 79 aa10.67□□□□□ -0.7
CLN3-204ENST00000357857 FAM236BA0A1B0GV22 79 aa10.67□□□□□ -0.7
CLN3-204ENST00000357857 C1orf195Q5TG92 126 aa10.67□□□□□ -0.7
CLN3-204ENST00000357857 LRP1Q07954 4544 aaKnown RBP10.66□□□□□ -0.7
CLN3-204ENST00000357857 FAT3Q8TDW7 4589 aa10.65□□□□□ -0.7
CLN3-204ENST00000357857 NDUFB1O75438 58 aa10.65□□□□□ -0.7
CLN3-204ENST00000357857 PRR15Q8IV56 129 aa10.65□□□□□ -0.7
CLN3-204ENST00000357857 TNXBP22105 4242 aa10.63□□□□□ -0.71
CLN3-204ENST00000357857 A0A1B0GVX0 72 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms