RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ADM2Q7Z4H4 148 aa3.82□□□□□ -1.8
UPF2-201ENST00000356352 CENPFP49454 3210 aa3.82□□□□□ -1.8
UPF2-201ENST00000356352 H3BS24 57 aa3.81□□□□□ -1.8
UPF2-201ENST00000356352 CEP295Q9C0D2 2601 aa3.81□□□□□ -1.8
UPF2-201ENST00000356352 CHD8Q9HCK8 2581 aa3.81□□□□□ -1.8
UPF2-201ENST00000356352 MTORP42345 2549 aa3.81□□□□□ -1.8
UPF2-201ENST00000356352 KRTAP10-2P60368 255 aa3.8□□□□□ -1.8
UPF2-201ENST00000356352 SETD2Q9BYW2 2564 aaPredicted RBP3.8□□□□□ -1.8
UPF2-201ENST00000356352 PANO1I0J062 215 aa3.79□□□□□ -1.8
UPF2-201ENST00000356352 TNRC18O15417 2968 aaPredicted RBP3.79□□□□□ -1.8
UPF2-201ENST00000356352 CYSTM1Q9H1C7 97 aa3.79□□□□□ -1.8
UPF2-201ENST00000356352 KRTAP4-16G5E9R7 235 aaPredicted RBP3.78□□□□□ -1.8
UPF2-201ENST00000356352 KRTAP29-1A8MX34 341 aaPredicted RBP3.78□□□□□ -1.8
UPF2-201ENST00000356352 TRANK1O15050 2925 aa3.78□□□□□ -1.81
UPF2-201ENST00000356352 FASNP49327 2511 aaKnown RBP3.76□□□□□ -1.81
UPF2-201ENST00000356352 ACANP16112 2415 aa3.76□□□□□ -1.81
UPF2-201ENST00000356352 POLQO75417 2590 aa3.76□□□□□ -1.81
UPF2-201ENST00000356352 SPTBN5Q9NRC6 3674 aaKnown RBP3.76□□□□□ -1.81
UPF2-201ENST00000356352 SPATA8Q6RVD6 105 aa3.75□□□□□ -1.81
UPF2-201ENST00000356352 DNAH12Q6ZR08 3092 aa3.75□□□□□ -1.81
UPF2-201ENST00000356352 SPTBN4Q9H254 2564 aa3.74□□□□□ -1.81
UPF2-201ENST00000356352 CHD9Q3L8U1 2897 aa3.72□□□□□ -1.81
UPF2-201ENST00000356352 A0A087X002 238 aa3.72□□□□□ -1.81
UPF2-201ENST00000356352 A8MUU9 505 aa3.7□□□□□ -1.82
UPF2-201ENST00000356352 WDR87Q6ZQQ6 2873 aa3.7□□□□□ -1.82
UPF2-201ENST00000356352 KRTAP25-1Q3LHN0 102 aa3.69□□□□□ -1.82
UPF2-201ENST00000356352 KRTAP16-1A8MUX0 517 aa3.68□□□□□ -1.82
UPF2-201ENST00000356352 C20orf166-AS1Q96NR2 134 aa3.68□□□□□ -1.82
UPF2-201ENST00000356352 NOTCH2NLQ7Z3S9 236 aa3.67□□□□□ -1.82
UPF2-201ENST00000356352 SRCAPQ6ZRS2 3230 aa3.66□□□□□ -1.82
UPF2-201ENST00000356352 Q6ZRN7 208 aaPredicted RBP3.65□□□□□ -1.82
UPF2-201ENST00000356352 A6NN06 94 aa3.64□□□□□ -1.83
UPF2-201ENST00000356352 TNP1P09430 55 aa3.64□□□□□ -1.83
UPF2-201ENST00000356352 CHD7Q9P2D1 2997 aa3.63□□□□□ -1.83
UPF2-201ENST00000356352 CEP350Q5VT06 3117 aa3.63□□□□□ -1.83
UPF2-201ENST00000356352 KRTAP13-1Q8IUC0 172 aa3.62□□□□□ -1.83
UPF2-201ENST00000356352 A8MU10 97 aa3.61□□□□□ -1.83
UPF2-201ENST00000356352 KRTAP13-2Q52LG2 175 aa3.61□□□□□ -1.83
UPF2-201ENST00000356352 XIRP2A4UGR9 3374 aa3.6□□□□□ -1.83
UPF2-201ENST00000356352 MGAM2Q2M2H8 2515 aa3.6□□□□□ -1.83
UPF2-201ENST00000356352 KRTAP11-1Q8IUC1 163 aa3.6□□□□□ -1.83
UPF2-201ENST00000356352 HECTD1Q9ULT8 2610 aa3.6□□□□□ -1.83
UPF2-201ENST00000356352 PRUNE2Q8WUY3 3088 aa3.6□□□□□ -1.83
UPF2-201ENST00000356352 MKI67P46013 3256 aaKnown RBP3.6□□□□□ -1.83
UPF2-201ENST00000356352 KRTAP21-3Q3LHN1 58 aa3.6□□□□□ -1.83
UPF2-201ENST00000356352 PP632Q6XCG6 107 aa3.58□□□□□ -1.84
UPF2-201ENST00000356352 CDH23Q9H251 3354 aa3.58□□□□□ -1.84
UPF2-201ENST00000356352 EPG5Q9HCE0 2579 aa3.58□□□□□ -1.84
UPF2-201ENST00000356352 FLNAP21333 2647 aaKnown RBP3.58□□□□□ -1.84
UPF2-201ENST00000356352 KRTAP7-1Q8IUC3 87 aa3.57□□□□□ -1.84
UPF2-201ENST00000356352 SZT2Q5T011 3432 aa3.56□□□□□ -1.84
UPF2-201ENST00000356352 SPENQ96T58 3664 aaKnown RBP3.56□□□□□ -1.84
UPF2-201ENST00000356352 BSNQ9UPA5 3926 aa3.55□□□□□ -1.84
UPF2-201ENST00000356352 USP24Q9UPU5 2620 aa3.55□□□□□ -1.84
UPF2-201ENST00000356352 WDFY3Q8IZQ1 3526 aa3.54□□□□□ -1.84
UPF2-201ENST00000356352 ITPR3Q14573 2671 aa3.54□□□□□ -1.84
UPF2-201ENST00000356352 C10orf95Q9H7T3 257 aa3.54□□□□□ -1.84
UPF2-201ENST00000356352 EYSQ5T1H1 3165 aa3.54□□□□□ -1.84
UPF2-201ENST00000356352 LAMA2P24043 3122 aaKnown RBP3.54□□□□□ -1.84
UPF2-201ENST00000356352 DMDP11532 3685 aa3.53□□□□□ -1.84
UPF2-201ENST00000356352 NDUFAF8A1L188 74 aa3.53□□□□□ -1.84
UPF2-201ENST00000356352 UNC80Q8N2C7 3258 aa3.5□□□□□ -1.85
UPF2-201ENST00000356352 ATRQ13535 2644 aa3.5□□□□□ -1.85
UPF2-201ENST00000356352 FLNBO75369 2602 aaKnown RBP3.5□□□□□ -1.85
UPF2-201ENST00000356352 HELZ2Q9BYK8 2649 aaKnown RBP3.49□□□□□ -1.85
UPF2-201ENST00000356352 MAST4O15021 2626 aa3.48□□□□□ -1.85
UPF2-201ENST00000356352 LAMA3Q16787 3333 aa3.48□□□□□ -1.85
UPF2-201ENST00000356352 KRTAP10-8P60410 259 aa3.47□□□□□ -1.85
UPF2-201ENST00000356352 XP32Q5T750 250 aa3.46□□□□□ -1.85
UPF2-201ENST00000356352 MUC3AQ02505 3323 aa3.46□□□□□ -1.86
UPF2-201ENST00000356352 PRO2289Q9P1D8 64 aa3.46□□□□□ -1.86
UPF2-201ENST00000356352 FLG2Q5D862 2391 aaPredicted RBP3.45□□□□□ -1.86
UPF2-201ENST00000356352 TPRXLQ17RH7 258 aa3.45□□□□□ -1.86
UPF2-201ENST00000356352 DMBT1Q9UGM3 2413 aaPredicted RBP3.44□□□□□ -1.86
UPF2-201ENST00000356352 MYO15AQ9UKN7 3530 aa3.44□□□□□ -1.86
UPF2-201ENST00000356352 DNAH14Q0VDD8 3507 aa3.43□□□□□ -1.86
UPF2-201ENST00000356352 STAB1Q9NY15 2570 aa3.43□□□□□ -1.86
UPF2-201ENST00000356352 ZFHX4Q86UP3 3567 aa3.42□□□□□ -1.86
UPF2-201ENST00000356352 C5orf42Q9H799 3197 aa3.42□□□□□ -1.86
UPF2-201ENST00000356352 KRTAP1-4P0C5Y4 121 aa3.42□□□□□ -1.86
UPF2-201ENST00000356352 NBEAL1Q6ZS30 2694 aa3.4□□□□□ -1.86
UPF2-201ENST00000356352 P0C880 135 aa3.4□□□□□ -1.87
UPF2-201ENST00000356352 RANBP2P49792 3224 aaKnown RBP3.4□□□□□ -1.87
UPF2-201ENST00000356352 VCANP13611 3396 aa3.39□□□□□ -1.87
UPF2-201ENST00000356352 A0A1B0GVY2 172 aa3.38□□□□□ -1.87
UPF2-201ENST00000356352 CFAP46Q8IYW2 2715 aa3.38□□□□□ -1.87
UPF2-201ENST00000356352 KRTAP10-10P60014 251 aa3.38□□□□□ -1.87
UPF2-201ENST00000356352 H0YAA0 97 aa3.37□□□□□ -1.87
UPF2-201ENST00000356352 KRTAP13-3Q3SY46 172 aa3.34□□□□□ -1.88
UPF2-201ENST00000356352 LAMA1P25391 3075 aa3.33□□□□□ -1.88
UPF2-201ENST00000356352 ZFHX3Q15911 3703 aa3.33□□□□□ -1.88
UPF2-201ENST00000356352 CENPEQ02224 2701 aa3.33□□□□□ -1.88
UPF2-201ENST00000356352 COL6A3P12111 3177 aa3.32□□□□□ -1.88
UPF2-201ENST00000356352 TRIOO75962 3097 aa3.32□□□□□ -1.88
UPF2-201ENST00000356352 KMT2BQ9UMN6 2715 aaPredicted RBP3.3□□□□□ -1.88
UPF2-201ENST00000356352 TEX15Q9BXT5 2789 aa3.29□□□□□ -1.88
UPF2-201ENST00000356352 SPEGQ15772 3267 aa3.29□□□□□ -1.88
UPF2-201ENST00000356352 WDFY4Q6ZS81 3184 aa3.28□□□□□ -1.88
UPF2-201ENST00000356352 PRRC2CQ9Y520 2896 aaKnown RBP3.28□□□□□ -1.88
UPF2-201ENST00000356352 VPS13AQ96RL7 3174 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 163.1 ms