RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 KRTAP10-3P60369 221 aa6.5□□□□□ -1.37
CCDC88A-202ENST00000336838 KRTAP1-1Q07627 177 aa6.49□□□□□ -1.37
CCDC88A-202ENST00000336838 A0A1W2PNN7 141 aa6.49□□□□□ -1.37
CCDC88A-202ENST00000336838 ITPR1Q14643 2758 aa6.48□□□□□ -1.37
CCDC88A-202ENST00000336838 Q8N9P0 234 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-202ENST00000336838 VPS13AQ96RL7 3174 aa6.46□□□□□ -1.38
CCDC88A-202ENST00000336838 FP248Q71RG6 208 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-202ENST00000336838 FRYQ5TBA9 3013 aa6.45□□□□□ -1.38
CCDC88A-202ENST00000336838 UTP20O75691 2785 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-202ENST00000336838 LINC00472Q9H8W2 130 aa6.44□□□□□ -1.38
CCDC88A-202ENST00000336838 RANBP2P49792 3224 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-202ENST00000336838 MMP24-AS1A0A0U1RRL7 71 aa6.43□□□□□ -1.38
CCDC88A-202ENST00000336838 DMBT1Q9UGM3 2413 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-202ENST00000336838 UBR5O95071 2799 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-202ENST00000336838 TRIOO75962 3097 aa6.42□□□□□ -1.38
CCDC88A-202ENST00000336838 RBM12B-AS1Q9P1G2 102 aa6.41□□□□□ -1.38
CCDC88A-202ENST00000336838 PLAC8Q9NZF1 115 aa6.4□□□□□ -1.38
CCDC88A-202ENST00000336838 BAHCC1Q9P281 2608 aa6.39□□□□□ -1.39
CCDC88A-202ENST00000336838 Q5VV11 94 aa6.39□□□□□ -1.39
CCDC88A-202ENST00000336838 TNP2Q05952 138 aa6.38□□□□□ -1.39
CCDC88A-202ENST00000336838 HRES1P13985 223 aa6.37□□□□□ -1.39
CCDC88A-202ENST00000336838 Q6ZR54 194 aa6.37□□□□□ -1.39
CCDC88A-202ENST00000336838 A0A1B0GU33 70 aa6.37□□□□□ -1.39
CCDC88A-202ENST00000336838 CASC10Q5T4H9 136 aa6.37□□□□□ -1.39
CCDC88A-202ENST00000336838 LINC00483Q53H64 154 aa6.36□□□□□ -1.39
CCDC88A-202ENST00000336838 NIPBLQ6KC79 2804 aaeCLIP6.35□□□□□ -1.391e-10■□□□□ 8.6
CCDC88A-202ENST00000336838 CYSTM1Q9H1C7 97 aa6.35□□□□□ -1.39
CCDC88A-202ENST00000336838 A0A0G2JQZ4 141 aa6.35□□□□□ -1.39
CCDC88A-202ENST00000336838 DMAC1Q96GE9 116 aa6.35□□□□□ -1.39
CCDC88A-202ENST00000336838 LINC01554Q52M75 96 aa6.35□□□□□ -1.39
CCDC88A-202ENST00000336838 Q8NDZ9 215 aa6.34□□□□□ -1.39
CCDC88A-202ENST00000336838 FRYLO94915 3013 aa6.33□□□□□ -1.4
CCDC88A-202ENST00000336838 PRR26Q8N8Z3 221 aa6.32□□□□□ -1.4
CCDC88A-202ENST00000336838 ZCCHC13Q8WW36 166 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-202ENST00000336838 KRTAP4-16G5E9R7 235 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-202ENST00000336838 LRBAP50851 2863 aa6.32□□□□□ -1.4
CCDC88A-202ENST00000336838 KRTAP26-1Q6PEX3 210 aa6.31□□□□□ -1.4
CCDC88A-202ENST00000336838 NBEAQ8NFP9 2946 aa6.31□□□□□ -1.4
CCDC88A-202ENST00000336838 MKI67P46013 3256 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-202ENST00000336838 LCE6AA0A183 80 aa6.29□□□□□ -1.4
CCDC88A-202ENST00000336838 LUZP6Q538Z0 58 aa6.29□□□□□ -1.4
CCDC88A-202ENST00000336838 TACC2O95359 2948 aa6.29□□□□□ -1.4
CCDC88A-202ENST00000336838 KALRNO60229 2985 aa6.29□□□□□ -1.4
CCDC88A-202ENST00000336838 Q5W150 140 aa6.28□□□□□ -1.4
CCDC88A-202ENST00000336838 Q8N1X5 172 aa6.28□□□□□ -1.4
CCDC88A-202ENST00000336838 ANAPC11Q9NYG5 84 aa6.28□□□□□ -1.4
CCDC88A-202ENST00000336838 C9orf92A6NGG3 77 aa6.27□□□□□ -1.41
CCDC88A-202ENST00000336838 A0A087X002 238 aa6.27□□□□□ -1.41
CCDC88A-202ENST00000336838 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.27□□□□□ -1.41
CCDC88A-202ENST00000336838 WDFY4Q6ZS81 3184 aa6.26□□□□□ -1.41
CCDC88A-202ENST00000336838 KRTAP29-1A8MX34 341 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-202ENST00000336838 OXTP01178 125 aa6.25□□□□□ -1.41
CCDC88A-202ENST00000336838 PRUNE2Q8WUY3 3088 aa6.23□□□□□ -1.41
CCDC88A-202ENST00000336838 LAMA3Q16787 3333 aa6.23□□□□□ -1.41
CCDC88A-202ENST00000336838 COX6B2Q6YFQ2 88 aa6.22□□□□□ -1.41
CCDC88A-202ENST00000336838 RPS29P62273 56 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-202ENST00000336838 J3QL48 77 aa6.2□□□□□ -1.42
CCDC88A-202ENST00000336838 LAMA1P25391 3075 aa6.17□□□□□ -1.42
CCDC88A-202ENST00000336838 ZZEF1O43149 2961 aa6.17□□□□□ -1.42
CCDC88A-202ENST00000336838 S4R3F8 94 aa6.17□□□□□ -1.42
CCDC88A-202ENST00000336838 CSAG1Q6PB30 78 aa6.17□□□□□ -1.42
CCDC88A-202ENST00000336838 SPINK7P58062 85 aa6.16□□□□□ -1.42
CCDC88A-202ENST00000336838 A0A0D9SG42 100 aa6.16□□□□□ -1.42
CCDC88A-202ENST00000336838 Q6ZSA8 131 aa6.15□□□□□ -1.42
CCDC88A-202ENST00000336838 HRNRQ86YZ3 2850 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-202ENST00000336838 ZANQ9Y493 2812 aa6.15□□□□□ -1.42
CCDC88A-202ENST00000336838 SPATA8Q6RVD6 105 aa6.14□□□□□ -1.43
CCDC88A-202ENST00000336838 ROMO1P60602 79 aa6.13□□□□□ -1.43
CCDC88A-202ENST00000336838 RPL37P61927 97 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-202ENST00000336838 HIVEP1P15822 2718 aa6.11□□□□□ -1.43
CCDC88A-202ENST00000336838 NF1P21359 2839 aa6.1□□□□□ -1.43
CCDC88A-202ENST00000336838 KRTAP1-5Q9BYS1 174 aa6.1□□□□□ -1.43
CCDC88A-202ENST00000336838 BRCA2P51587 3418 aa6.09□□□□□ -1.43
CCDC88A-202ENST00000336838 H1FX-AS1Q4G0G2 97 aa6.09□□□□□ -1.43
CCDC88A-202ENST00000336838 CELSR2Q9HCU4 2923 aa6.07□□□□□ -1.44
CCDC88A-202ENST00000336838 SMR3BP02814 79 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-202ENST00000336838 A0A0A0MQY5 61 aa6.07□□□□□ -1.44
CCDC88A-202ENST00000336838 USP34Q70CQ2 3546 aa6.06□□□□□ -1.44
CCDC88A-202ENST00000336838 A6NN06 94 aa6.05□□□□□ -1.44
CCDC88A-202ENST00000336838 XIRP2A4UGR9 3374 aa6.05□□□□□ -1.44
CCDC88A-202ENST00000336838 CAMK2N1Q7Z7J9 78 aa6.05□□□□□ -1.44
CCDC88A-202ENST00000336838 ADGRG4Q8IZF6 3080 aa6.05□□□□□ -1.44
CCDC88A-202ENST00000336838 ASH1LQ9NR48 2969 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-202ENST00000336838 H3BS24 57 aa6.04□□□□□ -1.44
CCDC88A-202ENST00000336838 TNRC18O15417 2968 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-202ENST00000336838 PRAC1Q96KF2 57 aa6.02□□□□□ -1.45
CCDC88A-202ENST00000336838 SEC61BP60468 96 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-202ENST00000336838 CDH23Q9H251 3354 aa6.01□□□□□ -1.45
CCDC88A-202ENST00000336838 BOD1L1Q8NFC6 3051 aa6.01□□□□□ -1.45
CCDC88A-202ENST00000336838 PANO1I0J062 215 aa6□□□□□ -1.45
CCDC88A-202ENST00000336838 R4GN34 69 aa6□□□□□ -1.45
CCDC88A-202ENST00000336838 KRTAP13-1Q8IUC0 172 aa5.99□□□□□ -1.45
CCDC88A-202ENST00000336838 MXRA5Q9NR99 2828 aa5.99□□□□□ -1.45
CCDC88A-202ENST00000336838 ATMQ13315 3056 aa5.97□□□□□ -1.45
CCDC88A-202ENST00000336838 DNAH14Q0VDD8 3507 aa5.97□□□□□ -1.45
CCDC88A-202ENST00000336838 DMXL2Q8TDJ6 3036 aa5.96□□□□□ -1.46
CCDC88A-202ENST00000336838 DCHS2Q6V1P9 2916 aa5.95□□□□□ -1.46
CCDC88A-202ENST00000336838 COL12A1Q99715 3063 aa5.95□□□□□ -1.46
CCDC88A-202ENST00000336838 M0QZ58 72 aa5.94□□□□□ -1.46
CCDC88A-202ENST00000336838 FBN2P35556 2912 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms