RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 Q5W150 140 aa10.44□□□□□ -0.74
SHANK1-201ENST00000293441 SPINK7P58062 85 aa10.43□□□□□ -0.74
SHANK1-201ENST00000293441 SEC61BP60468 96 aaKnown RBP10.43□□□□□ -0.74
SHANK1-201ENST00000293441 HTTP42858 3142 aa10.41□□□□□ -0.74
SHANK1-201ENST00000293441 SPRR1BP22528 89 aa10.4□□□□□ -0.74
SHANK1-201ENST00000293441 LINC00472Q9H8W2 130 aa10.4□□□□□ -0.74
SHANK1-201ENST00000293441 CHD9Q3L8U1 2897 aa10.4□□□□□ -0.75
SHANK1-201ENST00000293441 LINC00483Q53H64 154 aa10.39□□□□□ -0.75
SHANK1-201ENST00000293441 KRTAP26-1Q6PEX3 210 aa10.39□□□□□ -0.75
SHANK1-201ENST00000293441 CFAP54Q96N23 3096 aa10.39□□□□□ -0.75
SHANK1-201ENST00000293441 BRCA2P51587 3418 aa10.36□□□□□ -0.75
SHANK1-201ENST00000293441 DMAC1Q96GE9 116 aa10.34□□□□□ -0.75
SHANK1-201ENST00000293441 RANBP2P49792 3224 aaKnown RBP10.34□□□□□ -0.75
SHANK1-201ENST00000293441 LAMA3Q16787 3333 aa10.34□□□□□ -0.75
SHANK1-201ENST00000293441 MGAQ8IWI9 3026 aa10.34□□□□□ -0.75
SHANK1-201ENST00000293441 R4GN34 69 aa10.33□□□□□ -0.76
SHANK1-201ENST00000293441 Q75L30 129 aa10.32□□□□□ -0.76
SHANK1-201ENST00000293441 LINC01558Q9Y6Z2 57 aa10.28□□□□□ -0.76
SHANK1-201ENST00000293441 PANO1I0J062 215 aa10.28□□□□□ -0.76
SHANK1-201ENST00000293441 CENPEQ02224 2701 aa10.26□□□□□ -0.77
SHANK1-201ENST00000293441 TEX15Q9BXT5 2789 aa10.25□□□□□ -0.77
SHANK1-201ENST00000293441 AKAP13Q12802 2813 aa10.23□□□□□ -0.77
SHANK1-201ENST00000293441 CHD6Q8TD26 2715 aa10.22□□□□□ -0.77
SHANK1-201ENST00000293441 XIRP2A4UGR9 3374 aa10.21□□□□□ -0.77
SHANK1-201ENST00000293441 CYSTM1Q9H1C7 97 aa10.19□□□□□ -0.78
SHANK1-201ENST00000293441 Q6ZR54 194 aa10.18□□□□□ -0.78
SHANK1-201ENST00000293441 PRUNE2Q8WUY3 3088 aa10.18□□□□□ -0.78
SHANK1-201ENST00000293441 TRANK1O15050 2925 aa10.18□□□□□ -0.78
SHANK1-201ENST00000293441 LAMA2P24043 3122 aaKnown RBP10.17□□□□□ -0.78
SHANK1-201ENST00000293441 FP248Q71RG6 208 aaPredicted RBP10.16□□□□□ -0.78
SHANK1-201ENST00000293441 TEP1Q99973 2627 aaKnown RBP10.16□□□□□ -0.78
SHANK1-201ENST00000293441 A0A087X002 238 aa10.15□□□□□ -0.78
SHANK1-201ENST00000293441 OXTP01178 125 aa10.15□□□□□ -0.78
SHANK1-201ENST00000293441 STAB1Q9NY15 2570 aa10.15□□□□□ -0.78
SHANK1-201ENST00000293441 M0QZ58 72 aa10.15□□□□□ -0.79
SHANK1-201ENST00000293441 WDFY4Q6ZS81 3184 aa10.14□□□□□ -0.79
SHANK1-201ENST00000293441 A0A0C4DFX4 3053 aa10.14□□□□□ -0.79
SHANK1-201ENST00000293441 TRIOO75962 3097 aa10.12□□□□□ -0.79
SHANK1-201ENST00000293441 Q5VV11 94 aa10.1□□□□□ -0.79
SHANK1-201ENST00000293441 KRTAP4-16G5E9R7 235 aaPredicted RBP10.1□□□□□ -0.79
SHANK1-201ENST00000293441 PRAC1Q96KF2 57 aa10.09□□□□□ -0.79
SHANK1-201ENST00000293441 ADM2Q7Z4H4 148 aa10.07□□□□□ -0.8
SHANK1-201ENST00000293441 CDH23Q9H251 3354 aa10.07□□□□□ -0.8
SHANK1-201ENST00000293441 Q5XG85 94 aa10.06□□□□□ -0.8
SHANK1-201ENST00000293441 RPL37P61927 97 aaKnown RBP10.05□□□□□ -0.8
SHANK1-201ENST00000293441 NBEAL1Q6ZS30 2694 aa10.04□□□□□ -0.8
SHANK1-201ENST00000293441 ZNF292O60281 2723 aa10.04□□□□□ -0.8
SHANK1-201ENST00000293441 H1FX-AS1Q4G0G2 97 aa10.04□□□□□ -0.8
SHANK1-201ENST00000293441 PLAC4Q8WY50 150 aa10.02□□□□□ -0.8
SHANK1-201ENST00000293441 FLG2Q5D862 2391 aaPredicted RBP10□□□□□ -0.81
SHANK1-201ENST00000293441 A0A0A0MQY5 61 aa9.99□□□□□ -0.81
SHANK1-201ENST00000293441 UNC80Q8N2C7 3258 aa9.99□□□□□ -0.81
SHANK1-201ENST00000293441 KRTAP11-1Q8IUC1 163 aa9.98□□□□□ -0.81
SHANK1-201ENST00000293441 COL6A5A8TX70 2615 aa9.97□□□□□ -0.81
SHANK1-201ENST00000293441 SETXQ7Z333 2677 aaKnown RBP9.97□□□□□ -0.81
SHANK1-201ENST00000293441 ROMO1P60602 79 aa9.97□□□□□ -0.81
SHANK1-201ENST00000293441 SPATA8Q6RVD6 105 aa9.97□□□□□ -0.81
SHANK1-201ENST00000293441 UNC79Q9P2D8 2635 aa9.96□□□□□ -0.81
SHANK1-201ENST00000293441 GCN1Q92616 2671 aaKnown RBP9.96□□□□□ -0.81
SHANK1-201ENST00000293441 BAHCC1Q9P281 2608 aa9.96□□□□□ -0.81
SHANK1-201ENST00000293441 CELSR3Q9NYQ7 3312 aa9.96□□□□□ -0.81
SHANK1-201ENST00000293441 NOTCH2NLQ7Z3S9 236 aa9.96□□□□□ -0.82
SHANK1-201ENST00000293441 Q6ZRN7 208 aaPredicted RBP9.94□□□□□ -0.82
SHANK1-201ENST00000293441 H3BS24 57 aa9.92□□□□□ -0.82
SHANK1-201ENST00000293441 DSPP15924 2871 aaKnown RBP9.92□□□□□ -0.82
SHANK1-201ENST00000293441 KRTAP29-1A8MX34 341 aaPredicted RBP9.92□□□□□ -0.82
SHANK1-201ENST00000293441 VPS13AQ96RL7 3174 aa9.88□□□□□ -0.83
SHANK1-201ENST00000293441 IGSF10Q6WRI0 2623 aa9.87□□□□□ -0.83
SHANK1-201ENST00000293441 FRYQ5TBA9 3013 aa9.84□□□□□ -0.83
SHANK1-201ENST00000293441 NBEAL2Q6ZNJ1 2754 aa9.83□□□□□ -0.84
SHANK1-201ENST00000293441 RPS29P62273 56 aaKnown RBP9.83□□□□□ -0.84
SHANK1-201ENST00000293441 NOTCH1P46531 2555 aa9.82□□□□□ -0.84
SHANK1-201ENST00000293441 ASB16-AS1Q495Z4 193 aa9.82□□□□□ -0.84
SHANK1-201ENST00000293441 KRTAP7-1Q8IUC3 87 aa9.82□□□□□ -0.84
SHANK1-201ENST00000293441 ITPR2Q14571 2701 aa9.81□□□□□ -0.84
SHANK1-201ENST00000293441 SZT2Q5T011 3432 aa9.8□□□□□ -0.84
SHANK1-201ENST00000293441 KRTAP13-2Q52LG2 175 aa9.79□□□□□ -0.84
SHANK1-201ENST00000293441 DNAH14Q0VDD8 3507 aa9.78□□□□□ -0.84
SHANK1-201ENST00000293441 DMBT1Q9UGM3 2413 aaPredicted RBP9.78□□□□□ -0.84
SHANK1-201ENST00000293441 MAP1AP78559 2803 aaPredicted RBP9.74□□□□□ -0.85
SHANK1-201ENST00000293441 A8MUU9 505 aa9.74□□□□□ -0.85
SHANK1-201ENST00000293441 FREM2Q5SZK8 3169 aa9.72□□□□□ -0.85
SHANK1-201ENST00000293441 C20orf166-AS1Q96NR2 134 aa9.69□□□□□ -0.86
SHANK1-201ENST00000293441 COL6A3P12111 3177 aa9.68□□□□□ -0.86
SHANK1-201ENST00000293441 KRTAP13-1Q8IUC0 172 aa9.68□□□□□ -0.86
SHANK1-201ENST00000293441 UBR5O95071 2799 aaPredicted RBP9.67□□□□□ -0.86
SHANK1-201ENST00000293441 KRTAP21-3Q3LHN1 58 aa9.65□□□□□ -0.86
SHANK1-201ENST00000293441 KMT2BQ9UMN6 2715 aaPredicted RBP9.64□□□□□ -0.87
SHANK1-201ENST00000293441 A8MU10 97 aa9.64□□□□□ -0.87
SHANK1-201ENST00000293441 KALRNO60229 2985 aa9.63□□□□□ -0.87
SHANK1-201ENST00000293441 LAMA1P25391 3075 aa9.61□□□□□ -0.87
SHANK1-201ENST00000293441 VCANP13611 3396 aa9.61□□□□□ -0.87
SHANK1-201ENST00000293441 STAB2Q8WWQ8 2551 aa9.59□□□□□ -0.87
SHANK1-201ENST00000293441 NSD1Q96L73 2696 aaPredicted RBP9.57□□□□□ -0.88
SHANK1-201ENST00000293441 LRBAP50851 2863 aa9.54□□□□□ -0.88
SHANK1-201ENST00000293441 CRYBG3Q68DQ2 2970 aa9.53□□□□□ -0.88
SHANK1-201ENST00000293441 ITPR1Q14643 2758 aa9.53□□□□□ -0.88
SHANK1-201ENST00000293441 ATMQ13315 3056 aa9.5□□□□□ -0.89
SHANK1-201ENST00000293441 SPTBN5Q9NRC6 3674 aaKnown RBP9.5□□□□□ -0.89
SHANK1-201ENST00000293441 TACC2O95359 2948 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms