RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 BSNQ9UPA5 3926 aa0□□□□□ -2.41
UPF3B-203ENST00000478840 CCDC18Q5T9S5 1454 aa-0.02□□□□□ -2.41
UPF3B-203ENST00000478840 HMCN2Q8NDA2 5059 aa-0.02□□□□□ -2.41
UPF3B-203ENST00000478840 SPRR2BP35325 72 aa-0.02□□□□□ -2.41
UPF3B-203ENST00000478840 RGPD1P0DJD0 1748 aa-0.02□□□□□ -2.41
UPF3B-203ENST00000478840 PREX1Q8TCU6 1659 aa-0.02□□□□□ -2.41
UPF3B-203ENST00000478840 TMEM131LA2VDJ0 1609 aa-0.02□□□□□ -2.41
UPF3B-203ENST00000478840 WFDC13Q8IUB5 93 aa-0.03□□□□□ -2.41
UPF3B-203ENST00000478840 SETXQ7Z333 2677 aaKnown RBP-0.04□□□□□ -2.42
UPF3B-203ENST00000478840 HSPG2P98160 4391 aa-0.04□□□□□ -2.42
UPF3B-203ENST00000478840 SUPT6HQ7KZ85 1726 aaKnown RBP-0.04□□□□□ -2.42
UPF3B-203ENST00000478840 PRKDCP78527 4128 aaKnown RBP-0.05□□□□□ -2.42
UPF3B-203ENST00000478840 ATP5EP2Q5VTU8 51 aa-0.05□□□□□ -2.42
UPF3B-203ENST00000478840 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.05□□□□□ -2.42
UPF3B-203ENST00000478840 DCHS2Q6V1P9 2916 aa-0.06□□□□□ -2.42
UPF3B-203ENST00000478840 HMGA1P17096 107 aaKnown RBP-0.06□□□□□ -2.42
UPF3B-203ENST00000478840 DEFB135Q30KP9 77 aa-0.06□□□□□ -2.42
UPF3B-203ENST00000478840 CNOT1A5YKK6 2376 aaKnown RBP-0.06□□□□□ -2.42
UPF3B-203ENST00000478840 NCOA2Q15596 1464 aa-0.07□□□□□ -2.42
UPF3B-203ENST00000478840 DEFB121Q5J5C9 76 aa-0.07□□□□□ -2.42
UPF3B-203ENST00000478840 LELP1Q5T871 98 aa-0.07□□□□□ -2.42
UPF3B-203ENST00000478840 ALMS1Q8TCU4 4167 aa-0.07□□□□□ -2.42
UPF3B-203ENST00000478840 USP32Q8NFA0 1604 aa-0.07□□□□□ -2.42
UPF3B-203ENST00000478840 DSTQ03001 7570 aaKnown RBP-0.07□□□□□ -2.42
UPF3B-203ENST00000478840 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.07□□□□□ -2.42
UPF3B-203ENST00000478840 LTN1O94822 1766 aa-0.08□□□□□ -2.42
UPF3B-203ENST00000478840 TIAM2Q8IVF5 1701 aa-0.08□□□□□ -2.42
UPF3B-203ENST00000478840 CCDC88BA6NC98 1476 aa-0.09□□□□□ -2.42
UPF3B-203ENST00000478840 UMAD1C9J7I0 102 aa-0.09□□□□□ -2.42
UPF3B-203ENST00000478840 IFI27P40305 119 aaPredicted RBP-0.09□□□□□ -2.42
UPF3B-203ENST00000478840 MAGI3Q5TCQ9 1506 aa-0.09□□□□□ -2.42
UPF3B-203ENST00000478840 ACANP16112 2415 aa-0.09□□□□□ -2.42
UPF3B-203ENST00000478840 FLNBO75369 2602 aaKnown RBP-0.1□□□□□ -2.42
UPF3B-203ENST00000478840 NDUFA3O95167 84 aa-0.1□□□□□ -2.43
UPF3B-203ENST00000478840 POLR1AO95602 1720 aaPredicted RBP-0.1□□□□□ -2.43
UPF3B-203ENST00000478840 ABCC1P33527 1531 aa-0.11□□□□□ -2.43
UPF3B-203ENST00000478840 DCAF1Q9Y4B6 1507 aa-0.12□□□□□ -2.43
UPF3B-203ENST00000478840 C3orf79P0CE67 100 aa-0.12□□□□□ -2.43
UPF3B-203ENST00000478840 ERVK-7P63135 1459 aa-0.12□□□□□ -2.43
UPF3B-203ENST00000478840 ARHGAP35Q9NRY4 1499 aa-0.12□□□□□ -2.43
UPF3B-203ENST00000478840 KNL1Q8NG31 2342 aa-0.13□□□□□ -2.43
UPF3B-203ENST00000478840 NWD1Q149M9 1564 aa-0.13□□□□□ -2.43
UPF3B-203ENST00000478840 HECTD4Q9Y4D8 3996 aa-0.13□□□□□ -2.43
UPF3B-203ENST00000478840 PIK3C2BO00750 1634 aa-0.13□□□□□ -2.43
UPF3B-203ENST00000478840 PCNX1Q96RV3 2341 aa-0.14□□□□□ -2.43
UPF3B-203ENST00000478840 H3BUT2 72 aa-0.14□□□□□ -2.43
UPF3B-203ENST00000478840 IFI6P09912 130 aa-0.14□□□□□ -2.43
UPF3B-203ENST00000478840 KDM5DQ9BY66 1539 aa-0.14□□□□□ -2.43
UPF3B-203ENST00000478840 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.14□□□□□ -2.43
UPF3B-203ENST00000478840 LRP2P98164 4655 aa-0.15□□□□□ -2.43
UPF3B-203ENST00000478840 ZANQ9Y493 2812 aa-0.15□□□□□ -2.43
UPF3B-203ENST00000478840 A0A087WXM4 84 aa-0.15□□□□□ -2.43
UPF3B-203ENST00000478840 LCE6AA0A183 80 aa-0.15□□□□□ -2.43
UPF3B-203ENST00000478840 BVES-AS1Q5T3Y7 98 aa-0.15□□□□□ -2.43
UPF3B-203ENST00000478840 CICQ96RK0 1608 aaPredicted RBP-0.16□□□□□ -2.43
UPF3B-203ENST00000478840 PRO3102Q9H379 93 aa-0.16□□□□□ -2.44
UPF3B-203ENST00000478840 MUC12Q9UKN1 5478 aa-0.17□□□□□ -2.44
UPF3B-203ENST00000478840 DOT1LQ8TEK3 1739 aa-0.17□□□□□ -2.44
UPF3B-203ENST00000478840 DIP2BQ9P265 1576 aa-0.17□□□□□ -2.44
UPF3B-203ENST00000478840 PTPN23Q9H3S7 1636 aa-0.17□□□□□ -2.44
UPF3B-203ENST00000478840 TENM2Q9NT68 2774 aa-0.17□□□□□ -2.44
UPF3B-203ENST00000478840 STAB1Q9NY15 2570 aa-0.18□□□□□ -2.44
UPF3B-203ENST00000478840 ARFGEF2Q9Y6D5 1785 aa-0.18□□□□□ -2.44
UPF3B-203ENST00000478840 H0YGG7 62 aa-0.18□□□□□ -2.44
UPF3B-203ENST00000478840 SMIM13P0DJ93 91 aa-0.18□□□□□ -2.44
UPF3B-203ENST00000478840 NREPQ16612 68 aa-0.19□□□□□ -2.44
UPF3B-203ENST00000478840 REV3LO60673 3130 aa-0.19□□□□□ -2.44
UPF3B-203ENST00000478840 PDE4DIPQ5VU43 2346 aa-0.19□□□□□ -2.44
UPF3B-203ENST00000478840 COL6A3P12111 3177 aa-0.19□□□□□ -2.44
UPF3B-203ENST00000478840 CFAP74Q9C0B2 1584 aa-0.19□□□□□ -2.44
UPF3B-203ENST00000478840 NESP48681 1621 aa-0.2□□□□□ -2.44
UPF3B-203ENST00000478840 ZNF831Q5JPB2 1677 aa-0.2□□□□□ -2.44
UPF3B-203ENST00000478840 C18orf32Q8TCD1 76 aa-0.2□□□□□ -2.44
UPF3B-203ENST00000478840 ADAMTS12P58397 1594 aa-0.2□□□□□ -2.44
UPF3B-203ENST00000478840 SCRIBQ14160 1630 aa-0.2□□□□□ -2.44
UPF3B-203ENST00000478840 NDUFA4O00483 81 aa-0.21□□□□□ -2.44
UPF3B-203ENST00000478840 LINC00158P58513 81 aa-0.21□□□□□ -2.44
UPF3B-203ENST00000478840 C4AP0C0L4 1744 aa-0.22□□□□□ -2.44
UPF3B-203ENST00000478840 C4BP0C0L5 1744 aa-0.22□□□□□ -2.44
UPF3B-203ENST00000478840 ANKARQ7Z5J8 1434 aa-0.22□□□□□ -2.45
UPF3B-203ENST00000478840 RRBP1Q9P2E9 1410 aaKnown RBP-0.23□□□□□ -2.45
UPF3B-203ENST00000478840 ANKRD50Q9ULJ7 1429 aa-0.23□□□□□ -2.45
UPF3B-203ENST00000478840 WIZO95785 1651 aa-0.24□□□□□ -2.45
UPF3B-203ENST00000478840 TRANK1O15050 2925 aa-0.24□□□□□ -2.45
UPF3B-203ENST00000478840 KRTAP6-1Q3LI64 71 aa-0.24□□□□□ -2.45
UPF3B-203ENST00000478840 KMT2CQ8NEZ4 4911 aaKnown RBP-0.25□□□□□ -2.45
UPF3B-203ENST00000478840 SPRR2AP35326 72 aa-0.25□□□□□ -2.45
UPF3B-203ENST00000478840 PLXNC1O60486 1568 aa-0.25□□□□□ -2.45
UPF3B-203ENST00000478840 FAT1Q14517 4588 aa-0.27□□□□□ -2.45
UPF3B-203ENST00000478840 SCN11AQ9UI33 1791 aa-0.27□□□□□ -2.45
UPF3B-203ENST00000478840 DEPDC5O75140 1603 aa-0.27□□□□□ -2.45
UPF3B-203ENST00000478840 STAB2Q8WWQ8 2551 aa-0.28□□□□□ -2.45
UPF3B-203ENST00000478840 MRPL33O75394 65 aaKnown RBP-0.28□□□□□ -2.45
UPF3B-203ENST00000478840 NEBP20929 6669 aa-0.28□□□□□ -2.45
UPF3B-203ENST00000478840 CFAP43Q8NDM7 1665 aa-0.29□□□□□ -2.46
UPF3B-203ENST00000478840 DEFB131BA0A096LNP1 70 aa-0.29□□□□□ -2.46
UPF3B-203ENST00000478840 HERC1Q15751 4861 aa-0.29□□□□□ -2.46
UPF3B-203ENST00000478840 HECTD1Q9ULT8 2610 aa-0.29□□□□□ -2.46
UPF3B-203ENST00000478840 MAP3K1Q13233 1512 aa-0.29□□□□□ -2.46
UPF3B-203ENST00000478840 MUC2Q02817 5179 aa-0.29□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms