RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 GIG44P09565 113 aaPredicted RBP4.17□□□□□ -1.74
UPF2-201ENST00000356352 A0A1W2PNN7 141 aa4.17□□□□□ -1.74
UPF2-201ENST00000356352 CCDC168Q8NDH2 2452 aa4.16□□□□□ -1.74
UPF2-201ENST00000356352 IGLV5-48A0A075B6I7 105 aa4.16□□□□□ -1.74
UPF2-201ENST00000356352 LUZP6Q538Z0 58 aa4.16□□□□□ -1.74
UPF2-201ENST00000356352 SMR3BP02814 79 aaPredicted RBP4.16□□□□□ -1.74
UPF2-201ENST00000356352 KRTAP10-3P60369 221 aa4.16□□□□□ -1.74
UPF2-201ENST00000356352 LINC00483Q53H64 154 aa4.15□□□□□ -1.74
UPF2-201ENST00000356352 C2CD3Q4AC94 2353 aa4.15□□□□□ -1.74
UPF2-201ENST00000356352 LINC01554Q52M75 96 aa4.15□□□□□ -1.75
UPF2-201ENST00000356352 Q6ZSA8 131 aa4.15□□□□□ -1.75
UPF2-201ENST00000356352 A0A1W2PNM2 257 aa4.15□□□□□ -1.75
UPF2-201ENST00000356352 A0A0D9SG42 100 aa4.14□□□□□ -1.75
UPF2-201ENST00000356352 EIF4EBP3O60516 100 aaPredicted RBP4.13□□□□□ -1.75
UPF2-201ENST00000356352 ANAPC11Q9NYG5 84 aa4.13□□□□□ -1.75
UPF2-201ENST00000356352 PCSK5Q92824 1860 aa4.13□□□□□ -1.75
UPF2-201ENST00000356352 Q8N1X5 172 aa4.13□□□□□ -1.75
UPF2-201ENST00000356352 FAM229BQ4G0N7 80 aa4.12□□□□□ -1.75
UPF2-201ENST00000356352 Q1T7F1 81 aa4.12□□□□□ -1.75
UPF2-201ENST00000356352 A0A0G2JQZ4 141 aa4.12□□□□□ -1.75
UPF2-201ENST00000356352 IGF2RP11717 2491 aa4.12□□□□□ -1.75
UPF2-201ENST00000356352 NCOR2Q9Y618 2525 aa4.12□□□□□ -1.75
UPF2-201ENST00000356352 IGLV7-46A0A075B6I9 117 aa4.11□□□□□ -1.75
UPF2-201ENST00000356352 CASC10Q5T4H9 136 aa4.1□□□□□ -1.75
UPF2-201ENST00000356352 CAMK2N1Q7Z7J9 78 aa4.1□□□□□ -1.75
UPF2-201ENST00000356352 HRES1P13985 223 aa4.1□□□□□ -1.75
UPF2-201ENST00000356352 PRR26Q8N8Z3 221 aa4.1□□□□□ -1.75
UPF2-201ENST00000356352 MUC4Q99102 2169 aa4.1□□□□□ -1.75
UPF2-201ENST00000356352 LRRK2Q5S007 2527 aa4.1□□□□□ -1.75
UPF2-201ENST00000356352 MYO18BQ8IUG5 2567 aa4.09□□□□□ -1.75
UPF2-201ENST00000356352 A0A1B0GU33 70 aa4.08□□□□□ -1.76
UPF2-201ENST00000356352 PIEZO1Q92508 2521 aa4.08□□□□□ -1.76
UPF2-201ENST00000356352 OCR1Q9BZK8 76 aa4.08□□□□□ -1.76
UPF2-201ENST00000356352 Q75L30 129 aa4.06□□□□□ -1.76
UPF2-201ENST00000356352 DMAC1Q96GE9 116 aa4.06□□□□□ -1.76
UPF2-201ENST00000356352 KRTAP1-3Q8IUG1 177 aa4.06□□□□□ -1.76
UPF2-201ENST00000356352 ZCCHC13Q8WW36 166 aaKnown RBP4.06□□□□□ -1.76
UPF2-201ENST00000356352 PIEZO2Q9H5I5 2752 aa4.06□□□□□ -1.76
UPF2-201ENST00000356352 M0R2T5 61 aa4.05□□□□□ -1.76
UPF2-201ENST00000356352 CSAG1Q6PB30 78 aa4.05□□□□□ -1.76
UPF2-201ENST00000356352 TNP2Q05952 138 aa4.05□□□□□ -1.76
UPF2-201ENST00000356352 S4R3F8 94 aa4.05□□□□□ -1.76
UPF2-201ENST00000356352 MYO9AB2RTY4 2548 aa4.05□□□□□ -1.76
UPF2-201ENST00000356352 PLAC8Q9NZF1 115 aa4.05□□□□□ -1.76
UPF2-201ENST00000356352 KRTAP1-1Q07627 177 aa4.04□□□□□ -1.76
UPF2-201ENST00000356352 DOPEY1Q5JWR5 2465 aa4.03□□□□□ -1.76
UPF2-201ENST00000356352 LINC01558Q9Y6Z2 57 aa4.03□□□□□ -1.76
UPF2-201ENST00000356352 WIPF1O43516 503 aa4.02□□□□□ -1.77
UPF2-201ENST00000356352 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.02□□□□□ -1.77
UPF2-201ENST00000356352 ABCA12Q86UK0 2595 aa4.02□□□□□ -1.77
UPF2-201ENST00000356352 TLN1Q9Y490 2541 aaKnown RBP4.02□□□□□ -1.77
UPF2-201ENST00000356352 MMP24-AS1A0A0U1RRL7 71 aa4.01□□□□□ -1.77
UPF2-201ENST00000356352 USP34Q70CQ2 3546 aa4.01□□□□□ -1.77
UPF2-201ENST00000356352 SEC61BP60468 96 aaKnown RBP4□□□□□ -1.77
UPF2-201ENST00000356352 JMJD1CQ15652 2540 aa4□□□□□ -1.77
UPF2-201ENST00000356352 SPRR1BP22528 89 aa3.99□□□□□ -1.77
UPF2-201ENST00000356352 SPRR1AP35321 89 aa3.99□□□□□ -1.77
UPF2-201ENST00000356352 GOLGB1Q14789 3259 aaKnown RBP3.99□□□□□ -1.77
UPF2-201ENST00000356352 FN1P02751 2386 aaKnown RBP3.98□□□□□ -1.77
UPF2-201ENST00000356352 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
UPF2-201ENST00000356352 HTTP42858 3142 aa3.97□□□□□ -1.77
UPF2-201ENST00000356352 Q5W150 140 aa3.97□□□□□ -1.77
UPF2-201ENST00000356352 R4GN34 69 aa3.96□□□□□ -1.77
UPF2-201ENST00000356352 UTRNP46939 3433 aa3.96□□□□□ -1.78
UPF2-201ENST00000356352 Q8N9P0 234 aaPredicted RBP3.96□□□□□ -1.78
UPF2-201ENST00000356352 BPTFQ12830 3046 aa3.95□□□□□ -1.78
UPF2-201ENST00000356352 LINC00472Q9H8W2 130 aa3.95□□□□□ -1.78
UPF2-201ENST00000356352 USP9XQ93008 2570 aaPredicted RBP3.94□□□□□ -1.78
UPF2-201ENST00000356352 SPINK7P58062 85 aa3.94□□□□□ -1.78
UPF2-201ENST00000356352 ZNF462Q96JM2 2506 aa3.94□□□□□ -1.78
UPF2-201ENST00000356352 ZFYVE26Q68DK2 2539 aa3.94□□□□□ -1.78
UPF2-201ENST00000356352 F8P00451 2351 aa3.93□□□□□ -1.78
UPF2-201ENST00000356352 FP248Q71RG6 208 aaPredicted RBP3.93□□□□□ -1.78
UPF2-201ENST00000356352 ANKRD17O75179 2603 aaKnown RBP3.93□□□□□ -1.78
UPF2-201ENST00000356352 RPL37P61927 97 aaKnown RBP3.92□□□□□ -1.78
UPF2-201ENST00000356352 ROMO1P60602 79 aa3.91□□□□□ -1.78
UPF2-201ENST00000356352 Q5VSD8 79 aa3.91□□□□□ -1.78
UPF2-201ENST00000356352 TLN2Q9Y4G6 2542 aa3.91□□□□□ -1.78
UPF2-201ENST00000356352 PCNTO95613 3336 aa3.91□□□□□ -1.78
UPF2-201ENST00000356352 OXTP01178 125 aa3.9□□□□□ -1.78
UPF2-201ENST00000356352 Q5VV11 94 aa3.9□□□□□ -1.79
UPF2-201ENST00000356352 LCE6AA0A183 80 aa3.89□□□□□ -1.79
UPF2-201ENST00000356352 H1FX-AS1Q4G0G2 97 aa3.89□□□□□ -1.79
UPF2-201ENST00000356352 Q5XG85 94 aa3.89□□□□□ -1.79
UPF2-201ENST00000356352 ANKRD11Q6UB99 2663 aaPredicted RBP3.88□□□□□ -1.79
UPF2-201ENST00000356352 ASB16-AS1Q495Z4 193 aa3.88□□□□□ -1.79
UPF2-201ENST00000356352 PLAC4Q8WY50 150 aa3.88□□□□□ -1.79
UPF2-201ENST00000356352 KRTAP26-1Q6PEX3 210 aa3.88□□□□□ -1.79
UPF2-201ENST00000356352 M0QZ58 72 aa3.87□□□□□ -1.79
UPF2-201ENST00000356352 Q8NDZ9 215 aa3.87□□□□□ -1.79
UPF2-201ENST00000356352 PKD1L2Q7Z442 2459 aa3.87□□□□□ -1.79
UPF2-201ENST00000356352 PRAC1Q96KF2 57 aa3.86□□□□□ -1.79
UPF2-201ENST00000356352 CR1P17927 2039 aa3.85□□□□□ -1.79
UPF2-201ENST00000356352 Q6ZR54 194 aa3.85□□□□□ -1.79
UPF2-201ENST00000356352 BRCA2P51587 3418 aa3.85□□□□□ -1.79
UPF2-201ENST00000356352 USP9YO00507 2555 aaPredicted RBP3.85□□□□□ -1.79
UPF2-201ENST00000356352 REV3LO60673 3130 aa3.84□□□□□ -1.79
UPF2-201ENST00000356352 KRTAP10-1P60331 282 aa3.84□□□□□ -1.8
UPF2-201ENST00000356352 KRTAP1-5Q9BYS1 174 aa3.82□□□□□ -1.8
UPF2-201ENST00000356352 RPS29P62273 56 aaKnown RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms