RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 HAMPP81172 84 aa9.24□□□□□ -0.93
CLK3-206ENST00000562078 M0R2N4 97 aa9.23□□□□□ -0.93
CLK3-206ENST00000562078 IGHV3-53P01767 116 aa9.23□□□□□ -0.93
CLK3-206ENST00000562078 COX7B2Q8TF08 81 aa9.23□□□□□ -0.93
CLK3-206ENST00000562078 C1orf158Q8N1D5 194 aa9.23□□□□□ -0.93
CLK3-206ENST00000562078 RETNQ9HD89 108 aa9.23□□□□□ -0.93
CLK3-206ENST00000562078 VWFP04275 2813 aa9.22□□□□□ -0.93
CLK3-206ENST00000562078 IGLV1-51P01701 117 aa9.22□□□□□ -0.93
CLK3-206ENST00000562078 MIFP14174 115 aa9.22□□□□□ -0.93
CLK3-206ENST00000562078 Q8N814 137 aa9.22□□□□□ -0.93
CLK3-206ENST00000562078 LINC00167Q96N53 147 aa9.22□□□□□ -0.93
CLK3-206ENST00000562078 CDC42SE2Q9NRR3 84 aa9.22□□□□□ -0.93
CLK3-206ENST00000562078 TMEM256-PLSCR3K7ERE1 68 aa9.21□□□□□ -0.93
CLK3-206ENST00000562078 TRBV7-4A0A0J9YYF1 115 aa9.21□□□□□ -0.94
CLK3-206ENST00000562078 NDUFC1O43677 76 aa9.2□□□□□ -0.94
CLK3-206ENST00000562078 Q8N3U1 123 aa9.2□□□□□ -0.94
CLK3-206ENST00000562078 C11orf68Q9H3H3 251 aaKnown RBP9.2□□□□□ -0.94
CLK3-206ENST00000562078 TRBV6-4A0A1B0GX49 114 aa9.2□□□□□ -0.94
CLK3-206ENST00000562078 NTM-AS1Q6ZSK4 140 aa9.2□□□□□ -0.94
CLK3-206ENST00000562078 KRTAP24-1Q3LI83 254 aa9.19□□□□□ -0.94
CLK3-206ENST00000562078 TRGV1A0A0A0MS02 117 aa9.19□□□□□ -0.94
CLK3-206ENST00000562078 IGKV3OR2-268A0A0C4DH90 116 aa9.19□□□□□ -0.94
CLK3-206ENST00000562078 ATP5EP56381 51 aaPredicted RBP9.19□□□□□ -0.94
CLK3-206ENST00000562078 Q6ZVQ6 151 aa9.19□□□□□ -0.94
CLK3-206ENST00000562078 PMAIP1Q13794 54 aa9.18□□□□□ -0.94
CLK3-206ENST00000562078 Q6ZQT0 140 aa9.18□□□□□ -0.94
CLK3-206ENST00000562078 GIG44P09565 113 aaPredicted RBP9.17□□□□□ -0.94
CLK3-206ENST00000562078 PRR3P79522 188 aaKnown RBP9.17□□□□□ -0.94
CLK3-206ENST00000562078 C19orf73Q9NVV2 129 aa9.17□□□□□ -0.94
CLK3-206ENST00000562078 A0A087WZ39 114 aa9.16□□□□□ -0.94
CLK3-206ENST00000562078 CMC4P56277 68 aaPredicted RBP9.16□□□□□ -0.94
CLK3-206ENST00000562078 SCXQ7RTU7 201 aa9.16□□□□□ -0.94
CLK3-206ENST00000562078 IBA57-AS1B1ANH7 110 aa9.15□□□□□ -0.94
CLK3-206ENST00000562078 K7EQD1 137 aa9.15□□□□□ -0.94
CLK3-206ENST00000562078 NANOS2P60321 138 aaKnown RBP9.15□□□□□ -0.94
CLK3-206ENST00000562078 TMEM254Q8TBM7 123 aa9.15□□□□□ -0.94
CLK3-206ENST00000562078 NREPQ16612 68 aa9.14□□□□□ -0.95
CLK3-206ENST00000562078 ESRGQ1W209 222 aa9.14□□□□□ -0.95
CLK3-206ENST00000562078 NOP10Q9NPE3 64 aaKnown RBP9.14□□□□□ -0.95
CLK3-206ENST00000562078 FBN1P35555 2871 aaKnown RBP9.14□□□□□ -0.95
CLK3-206ENST00000562078 TRBV10-1A0A0K0K1A3 114 aa9.13□□□□□ -0.95
CLK3-206ENST00000562078 CD164Q04900 197 aa9.13□□□□□ -0.95
CLK3-206ENST00000562078 C4orf48Q5BLP8 95 aa9.13□□□□□ -0.95
CLK3-206ENST00000562078 SPATA3Q8NHX4 192 aa9.12□□□□□ -0.95
CLK3-206ENST00000562078 C9orf66Q5T8R8 295 aa9.12□□□□□ -0.95
CLK3-206ENST00000562078 PRR15Q8IV56 129 aa9.12□□□□□ -0.95
CLK3-206ENST00000562078 PLAC8L1A1L4L8 177 aa9.11□□□□□ -0.95
CLK3-206ENST00000562078 C16orf74Q96GX8 76 aa9.11□□□□□ -0.95
CLK3-206ENST00000562078 LAMTOR3Q9UHA4 124 aa9.11□□□□□ -0.95
CLK3-206ENST00000562078 CXCL6P80162 114 aa9.11□□□□□ -0.95
CLK3-206ENST00000562078 CSNK1G2-AS1Q8NCQ2 148 aa9.11□□□□□ -0.95
CLK3-206ENST00000562078 LOC110117498A0A087WWA1 95 aa9.1□□□□□ -0.95
CLK3-206ENST00000562078 UBE2L6O14933 153 aa9.1□□□□□ -0.95
CLK3-206ENST00000562078 NBEAL2Q6ZNJ1 2754 aa9.1□□□□□ -0.95
CLK3-206ENST00000562078 STAB1Q9NY15 2570 aa9.09□□□□□ -0.95
CLK3-206ENST00000562078 LRCOL1A6NCL2 159 aa9.09□□□□□ -0.95
CLK3-206ENST00000562078 BPY2O14599 106 aa9.09□□□□□ -0.95
CLK3-206ENST00000562078 TRRAPQ9Y4A5 3859 aa9.08□□□□□ -0.96
CLK3-206ENST00000562078 TRGV2A0A075B6R0 118 aa9.08□□□□□ -0.96
CLK3-206ENST00000562078 FUSP35637 526 aaKnown RBP eCLIP9.08□□□□□ -0.96
CLK3-206ENST00000562078 Q6ZRU5 148 aa9.08□□□□□ -0.96
CLK3-206ENST00000562078 Q6ZTC4 211 aa9.08□□□□□ -0.96
CLK3-206ENST00000562078 IGHV3OR16-9A0A0B4J2B5 98 aa9.08□□□□□ -0.96
CLK3-206ENST00000562078 C6orf99Q4VX62 202 aa9.08□□□□□ -0.96
CLK3-206ENST00000562078 PRYO14603 147 aa9.07□□□□□ -0.96
CLK3-206ENST00000562078 IGLV4-60A0A075B6I1 120 aa9.06□□□□□ -0.96
CLK3-206ENST00000562078 C6orf223Q8N319 242 aa9.06□□□□□ -0.96
CLK3-206ENST00000562078 Q8N9L7 120 aa9.05□□□□□ -0.96
CLK3-206ENST00000562078 COL6A5A8TX70 2615 aa9.05□□□□□ -0.96
CLK3-206ENST00000562078 LOC100131303A0A0U1RQF7 123 aa9.04□□□□□ -0.96
CLK3-206ENST00000562078 LINC00575Q6W349 94 aa9.04□□□□□ -0.96
CLK3-206ENST00000562078 HIGD2AQ9BW72 106 aa9.04□□□□□ -0.96
CLK3-206ENST00000562078 TRGV4A0A0C4DH28 118 aa9.03□□□□□ -0.96
CLK3-206ENST00000562078 DAD1P61803 113 aa9.03□□□□□ -0.96
CLK3-206ENST00000562078 ERC2-IT1O76042 136 aa9.03□□□□□ -0.96
CLK3-206ENST00000562078 Q6ZRP5 223 aa9.03□□□□□ -0.96
CLK3-206ENST00000562078 Q8NDZ9 215 aa9.01□□□□□ -0.97
CLK3-206ENST00000562078 MUC7Q8TAX7 377 aa9.01□□□□□ -0.97
CLK3-206ENST00000562078 PSPHP1O15172 72 aa9□□□□□ -0.97
CLK3-206ENST00000562078 DEFB130BP0DP73 79 aa9□□□□□ -0.97
CLK3-206ENST00000562078 DEFB130AP0DP74 79 aa9□□□□□ -0.97
CLK3-206ENST00000562078 CD164L2Q6UWJ8 174 aa9□□□□□ -0.97
CLK3-206ENST00000562078 OCR1Q9BZK8 76 aa9□□□□□ -0.97
CLK3-206ENST00000562078 hDV103S1A0JD37 113 aa8.99□□□□□ -0.97
CLK3-206ENST00000562078 PKD1L1Q8TDX9 2849 aa8.99□□□□□ -0.97
CLK3-206ENST00000562078 OXLD1Q5BKU9 147 aa8.99□□□□□ -0.97
CLK3-206ENST00000562078 Q6ZQY7 126 aa8.99□□□□□ -0.97
CLK3-206ENST00000562078 X6R8D5 127 aa8.99□□□□□ -0.97
CLK3-206ENST00000562078 CMYA5Q8N3K9 4069 aa8.99□□□□□ -0.97
CLK3-206ENST00000562078 Q1T7F1 81 aa8.97□□□□□ -0.97
CLK3-206ENST00000562078 DEFB135Q30KP9 77 aa8.97□□□□□ -0.97
CLK3-206ENST00000562078 A8MU10 97 aa8.96□□□□□ -0.97
CLK3-206ENST00000562078 PDE6GP18545 87 aa8.96□□□□□ -0.97
CLK3-206ENST00000562078 C9orf116Q5BN46 136 aaPredicted RBP8.96□□□□□ -0.98
CLK3-206ENST00000562078 IGKV4-1P06312 121 aa8.95□□□□□ -0.98
CLK3-206ENST00000562078 ANK2Q01484 3957 aa8.95□□□□□ -0.98
CLK3-206ENST00000562078 LINC00959A0A1B0GUT2 108 aa8.95□□□□□ -0.98
CLK3-206ENST00000562078 MRPL55Q7Z7F7 128 aaKnown RBP8.95□□□□□ -0.98
CLK3-206ENST00000562078 LINC00612Q8N6U2 182 aa8.95□□□□□ -0.98
CLK3-206ENST00000562078 C1orf64Q8NEQ6 169 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms