RNA–Protein interactions for RNA: ENST00000497171.1

PHC3-216, Transcript of polyhomeotic homolog 3, humanhuman

TSL 2

Gene PHC3, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-216ENST00000497171 NBEAL2Q6ZNJ1 2754 aa-0.33□□□□□ -2.46
PHC3-216ENST00000497171 GVINP1Q7Z2Y8 2422 aa-0.33□□□□□ -2.46
PHC3-216ENST00000497171 XRN1Q8IZH2 1706 aaKnown RBP-0.33□□□□□ -2.46
PHC3-216ENST00000497171 GCN1Q92616 2671 aaKnown RBP-0.33□□□□□ -2.46
PHC3-216ENST00000497171 URB1O60287 2271 aaKnown RBP-0.34□□□□□ -2.46
PHC3-216ENST00000497171 CUBNO60494 3623 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 LRRK2Q5S007 2527 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 A0A0G2JMZ2 1700 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 M0R2T5 61 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 LINC00846Q9NV44 126 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 SPG11Q96JI7 2443 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 FAM135AQ9P2D6 1515 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 TNRC18O15417 2968 aaPredicted RBP-0.34□□□□□ -2.46
PHC3-216ENST00000497171 TEX15Q9BXT5 2789 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 FAT2Q9NYQ8 4349 aa-0.34□□□□□ -2.46
PHC3-216ENST00000497171 IQSEC2Q5JU85 1478 aa-0.35□□□□□ -2.46
PHC3-216ENST00000497171 PLEKHH2Q8IVE3 1493 aa-0.35□□□□□ -2.46
PHC3-216ENST00000497171 PDCD11Q14690 1871 aaKnown RBP-0.35□□□□□ -2.46
PHC3-216ENST00000497171 FMN2Q9NZ56 1722 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 NBEAQ8NFP9 2946 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 UTP20O75691 2785 aaKnown RBP-0.35□□□□□ -2.47
PHC3-216ENST00000497171 ITPR1Q14643 2758 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 CEP295Q9C0D2 2601 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 DNHD1Q96M86 4753 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 A0A0G2JND7 137 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 CPSF4LA6NMK7 179 aaKnown RBP-0.35□□□□□ -2.47
PHC3-216ENST00000497171 GNGT2O14610 69 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 MT1AP04731 61 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 ASIPP42127 132 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 MT1HP80294 61 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 PKHD1P08F94 4074 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 MRC2Q9UBG0 1479 aa-0.35□□□□□ -2.47
PHC3-216ENST00000497171 PKD1L2Q7Z442 2459 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 MUC17Q685J3 4493 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 FAT3Q8TDW7 4589 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 TOPAZ1Q8N9V7 1692 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 DMXL1Q9Y485 3027 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 C9orf92A6NGG3 77 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 SPRR2FQ96RM1 72 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 PKHD1L1Q86WI1 4243 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 CHD1O14646 1710 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 ABCA3Q99758 1704 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 VPS13DQ5THJ4 4388 aa-0.36□□□□□ -2.47
PHC3-216ENST00000497171 AKAP9Q99996 3911 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 ACACAQ13085 2346 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 H0YGG7 62 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 H3BQF6 201 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 GNGT1P63211 74 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 PSMG4Q5JS54 123 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 C6orf201Q7Z4U5 140 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 DEFB107AQ8IZN7 70 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 CRIPTQ9P021 101 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 CACFD1Q9UGQ2 172 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 SVEP1Q4LDE5 3571 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 CCDC141Q6ZP82 1450 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 KNL1Q8NG31 2342 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 RELNP78509 3460 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 CFAP46Q8IYW2 2715 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 DNAH2Q9P225 4427 aa-0.37□□□□□ -2.47
PHC3-216ENST00000497171 ABCC5O15440 1437 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 LAMA3Q16787 3333 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 DNAH3Q8TD57 4116 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 KALRNO60229 2985 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 CHD7Q9P2D1 2997 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 MTORP42345 2549 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 PLECQ15149 4684 aaKnown RBP-0.38□□□□□ -2.47
PHC3-216ENST00000497171 PMCHL1Q16048 86 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 AP4S1Q9Y587 144 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 CEP290O15078 2479 aa-0.38□□□□□ -2.47
PHC3-216ENST00000497171 A0A0C4DFX4 3053 aa-0.39□□□□□ -2.47
PHC3-216ENST00000497171 REV3LO60673 3130 aa-0.39□□□□□ -2.47
PHC3-216ENST00000497171 ANK3Q12955 4377 aaKnown RBP-0.39□□□□□ -2.47
PHC3-216ENST00000497171 NDUFC1O43677 76 aa-0.39□□□□□ -2.47
PHC3-216ENST00000497171 LRBAP50851 2863 aa-0.39□□□□□ -2.47
PHC3-216ENST00000497171 KNDC1Q76NI1 1749 aa-0.39□□□□□ -2.47
PHC3-216ENST00000497171 EYSQ5T1H1 3165 aa-0.39□□□□□ -2.47
PHC3-216ENST00000497171 PDE4DIPQ5VU43 2346 aa-0.39□□□□□ -2.47
PHC3-216ENST00000497171 H0Y9P7 68 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 I3L3M4 83 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 S100A10P60903 97 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 DEFB135Q30KP9 77 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 KRTAP6-2Q3LI66 62 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 PMCHL2Q9BQD1 86 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 ACACBO00763 2458 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 BOD1L1Q8NFC6 3051 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 NBASA2RRP1 2371 aa-0.4□□□□□ -2.47
PHC3-216ENST00000497171 DNAH7Q8WXX0 4024 aa-0.41□□□□□ -2.47
PHC3-216ENST00000497171 DMXL2Q8TDJ6 3036 aa-0.41□□□□□ -2.47
PHC3-216ENST00000497171 TLN2Q9Y4G6 2542 aa-0.41□□□□□ -2.47
PHC3-216ENST00000497171 TRBV25-1A0A075B6N4 114 aa-0.41□□□□□ -2.48
PHC3-216ENST00000497171 TMEM218A2RU14 115 aa-0.41□□□□□ -2.48
PHC3-216ENST00000497171 UQCRHP07919 91 aa-0.41□□□□□ -2.48
PHC3-216ENST00000497171 S100PP25815 95 aa-0.41□□□□□ -2.48
PHC3-216ENST00000497171 C9orf62Q8N4C0 152 aa-0.41□□□□□ -2.48
PHC3-216ENST00000497171 COL4A6Q14031 1691 aa-0.41□□□□□ -2.48
PHC3-216ENST00000497171 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.41□□□□□ -2.48
PHC3-216ENST00000497171 MARF1Q9Y4F3 1742 aaKnown RBP-0.41□□□□□ -2.48
PHC3-216ENST00000497171 PRKDCP78527 4128 aaKnown RBP-0.41□□□□□ -2.48
PHC3-216ENST00000497171 MLH3Q9UHC1 1453 aa-0.41□□□□□ -2.48
PHC3-216ENST00000497171 ZZEF1O43149 2961 aa-0.42□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms