RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN1	YHR027C	DBP5	P20449	482 aa	Known RBP	3.21	□□□□□ -1.9
RPN1	YHR027C	DIT1	P21623	536 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	ATP12	P22135	325 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	MRPL32	P25348	183 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	PDC6	P26263	563 aa	Known RBP	3.21	□□□□□ -1.9
RPN1	YHR027C	RPS5	P26783	225 aa	Known RBP	3.21	□□□□□ -1.9
RPN1	YHR027C	TFC1	P32367	649 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	EAP1	P36041	632 aa	Known RBP	3.21	□□□□□ -1.9
RPN1	YHR027C	SPC42	P36094	363 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	DIA4	P38705	446 aa	Predicted RBP	3.21	□□□□□ -1.9
RPN1	YHR027C	BCD1	P38772	366 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	YAP5	P40574	245 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	AIP1	P46680	615 aa	Known RBP	3.21	□□□□□ -1.9
RPN1	YHR027C	AIM24	P47127	394 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	HPC2	Q01448	625 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	MUK1	Q02866	612 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	MCD1	Q12158	566 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	MAM3	Q12296	706 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	GTT2	Q12390	233 aa		3.21	□□□□□ -1.9
RPN1	YHR027C	YGL041W-A	P0C5N3	154 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	MRP2	P10663	115 aa	Predicted RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	GLK1	P17709	500 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	PEX3	P28795	441 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	NIC96	P34077	839 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	MAE1	P36013	669 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	RTC3	P38804	111 aa	Predicted RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	PMC1	P38929	1173 aa	Predicted RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	GPB2	P39717	880 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	EMP65	P40085	556 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	YJL070C	P40361	888 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	RTS2	P40962	232 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	YFR018C	P43599	363 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	IRC6	P43615	237 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	ROK1	P45818	564 aa	Predicted RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	RMR1	P53060	241 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	LSC2	P53312	427 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	ASI2	P53895	289 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	MPS1	P54199	764 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	DIG1	Q03063	452 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	EBS1	Q03466	884 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	YMR010W	Q03687	405 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	DUS3	Q06053	668 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	YLR352W	Q06479	807 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	YDL121C	Q07541	149 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	SNX3	Q08826	162 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	TUB3	P09734	445 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	RGP1	P16664	663 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	KTR1	P27810	393 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	RTG2	P32608	588 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	HBS1	P32769	611 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	SFA1	P32771	386 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	PEX6	P33760	1030 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	ABZ1	P37254	787 aa	Predicted RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	YPK3	P38070	525 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	CCZ1	P38273	704 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	YHL008C	P38750	627 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	KEL1	P38853	1164 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	SEO1	P39709	593 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	QRI1	P43123	477 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	NMD5	P46970	1048 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	MSE1	P48525	536 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	RSC4	Q02206	625 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	ADE13	Q05911	482 aa	Known RBP	3.2	□□□□□ -1.9
RPN1	YHR027C	ATG11	Q12527	1178 aa		3.2	□□□□□ -1.9
RPN1	YHR027C	RPN13	O13563	156 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	GPM1	P00950	247 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	ERG11	P10614	530 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	RGR1	P19263	1082 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	CMK2	P22517	447 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	IRE1	P32361	1115 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	SAC6	P32599	642 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	MDJ1	P35191	511 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	TYS1	P36421	394 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	YHR045W	P38775	560 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.19	□□□□□ -1.9	RIP-Chip
RPN1	YHR027C	ALD5	P40047	520 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	MAM33	P40513	266 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	CST6	P40535	587 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	FMP32	P43557	207 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	EMC2	P47133	292 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	YPT32	P51996	222 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	NMA2	P53204	395 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	OKP1	P53298	406 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	DBP6	P53734	629 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	ALO1	P54783	526 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	ACS1	Q01574	713 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	EGD1	Q02642	157 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	RMI1	Q02685	241 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	CRN1	Q06440	651 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	SUB2	Q07478	446 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	WHI4	Q07655	649 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	RSC58	Q07979	502 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	GYP1	Q08484	637 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	HRK1	Q08732	759 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	AIM41	Q12032	185 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	DPH6	Q12429	685 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	YHR213W-A	Q8TGT4	77 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	TY4B-H	P0C2J7	1802 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	TY4B-J	P47024	1803 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	CCP1	P00431	361 aa		3.19	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 33.6 ms