RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP49	YGL172W	ALY2	P47029	1046 aa		7	□□□□□ -1.29
NUP49	YGL172W	COQ6	P53318	479 aa		7	□□□□□ -1.29
NUP49	YGL172W	COP1	P53622	1201 aa	Known RBP	7	□□□□□ -1.29
NUP49	YGL172W	YMR187C	Q03236	431 aa		7	□□□□□ -1.29
NUP49	YGL172W	TDA9	Q04545	1251 aa		7	□□□□□ -1.29
NUP49	YGL172W	YOR387C	Q08910	206 aa		7	□□□□□ -1.29
NUP49	YGL172W	YDR018C	Q12185	396 aa		7	□□□□□ -1.29
NUP49	YGL172W	IZH4	Q99393	312 aa		7	□□□□□ -1.29
NUP49	YGL172W	BET2	P20133	325 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	SIR1	P21691	654 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	YCR015C	P25616	317 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	PPZ1	P26570	692 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	BYE1	P36106	594 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	PPX1	P38698	397 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	LAM1	P38851	1228 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	ARG2	P40360	574 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	RRT5	P43607	289 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	RTT101	P47050	842 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	YJR079W	P47126	109 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	TRM112	P53738	135 aa	Predicted RBP	6.99	□□□□□ -1.29
NUP49	YGL172W	MTG1	Q03151	367 aa	Predicted RBP	6.99	□□□□□ -1.29
NUP49	YGL172W	YDR344C	Q05510	147 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	CDC73	Q06697	393 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	TPO1	Q07824	586 aa		6.99	□□□□□ -1.29
NUP49	YGL172W	HIS1	P00498	297 aa	Known RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	PET111	P08468	800 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	KEX2	P13134	814 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	IMG2	P25642	146 aa	Predicted RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	SEC6	P32844	805 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	YKL097C	P34245	136 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	KTR4	P38131	464 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	6.98	□□□□□ -1.29	not detected
NUP49	YGL172W	ATG12	P38316	186 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	TIF5	P38431	405 aa	Known RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	MSG5	P38590	489 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	SAK1	P38990	1142 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	CCT4	P39078	528 aa	Known RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	EDC3	P39998	551 aa	Known RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	YMR134W	P40207	237 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	EMW1	P42842	904 aa	Known RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	RRB1	Q04225	511 aa	Known RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	VTI1	Q04338	217 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	YDL073W	Q07454	984 aa		6.98	□□□□□ -1.29
NUP49	YGL172W	NOP14	Q99207	810 aa	Known RBP	6.98	□□□□□ -1.29
NUP49	YGL172W	TRM1	P15565	570 aa	Known RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	6.97	□□□□□ -1.29	not detected
NUP49	YGL172W	ADY2	P25613	283 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	GCD6	P32501	712 aa	Known RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	GCG1	P32656	232 aa	Known RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	SGE1	P33335	543 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	AIM18	P38884	321 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	STL1	P39932	569 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	ATG36	P46983	293 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	MNN11	P46985	422 aa	Known RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	RFX1	P48743	811 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	TAN1	P53072	289 aa	Predicted RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	YGR127W	P53275	312 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	MAL13	P53338	473 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	6.97	□□□□□ -1.29	not detected
NUP49	YGL172W	HOS3	Q02959	697 aa	Known RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	RPN4	Q03465	531 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	SEG1	Q04279	960 aa		6.97	□□□□□ -1.29
NUP49	YGL172W	ECM38	Q05902	660 aa	Predicted RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	FAP7	Q12055	197 aa	Predicted RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	EFG1	Q3E705	233 aa	Known RBP	6.97	□□□□□ -1.29
NUP49	YGL172W	SGF29	P25554	259 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	MET22	P32179	357 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	AIM26	P32858	118 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	POL12	P38121	705 aa	Predicted RBP	6.96	□□□□□ -1.3
NUP49	YGL172W	BIT2	P38346	545 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	MMS21	P38632	267 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	MED6	P38782	295 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	YEL028W	P39989	153 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	UBP7	P40453	1071 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	RGD2	P43556	714 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	BST1	P43571	1029 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	PRP24	P49960	444 aa	Known RBP	6.96	□□□□□ -1.3
NUP49	YGL172W	TOF2	Q02208	771 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	UTP6	Q02354	440 aa	Known RBP	6.96	□□□□□ -1.3
NUP49	YGL172W	YHM2	Q04013	314 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	TMN2	Q04562	672 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	RTN1	Q04947	295 aa	Known RBP	6.96	□□□□□ -1.3
NUP49	YGL172W	ATG23	Q06671	453 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	APL5	Q08951	932 aa	Known RBP	6.96	□□□□□ -1.3
NUP49	YGL172W	WHI5	Q12416	295 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	PDH1	Q12428	516 aa	Known RBP	6.96	□□□□□ -1.3
NUP49	YGL172W	SEY1	Q99287	776 aa		6.96	□□□□□ -1.3
NUP49	YGL172W	HSF1	P10961	833 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	PUP3	P25451	205 aa	Known RBP	6.95	□□□□□ -1.3
NUP49	YGL172W	GPI10	P30777	616 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	CNS1	P33313	385 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	ECM2	P38241	364 aa	Known RBP	6.95	□□□□□ -1.3
NUP49	YGL172W	VHC1	P38329	1120 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	DIA4	P38705	446 aa	Predicted RBP	6.95	□□□□□ -1.3
NUP49	YGL172W	CEP3	P40969	608 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	RPS10B	P46784	105 aa	Known RBP	6.95	□□□□□ -1.3
NUP49	YGL172W	SNG1	P46950	547 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	NMD5	P46970	1048 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	HLJ1	P48353	224 aa		6.95	□□□□□ -1.3
NUP49	YGL172W	TUB4	P53378	473 aa		6.95	□□□□□ -1.3

Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms