RNA–Protein interactions for RNA: YAL059W

ECM1, Transcript of Pre-ribosomal factor involved in 60S ribosomal protein subunit export, yeast

Gene ECM1, Length 639 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM1	YAL059W	IME2	P32581	645 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	YBR053C	P38235	358 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	FTH1	P38310	465 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	YBR259W	P38338	688 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	DUN1	P39009	513 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	YER010C	P40011	234 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	KHA1	P40309	873 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	PSF2	P40359	213 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	POL31	P46957	487 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	PRP31	P49704	494 aa	Predicted RBP	5.43	□□□□□ -1.54
ECM1	YAL059W	YBP2	P53169	641 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	SLI1	P53304	468 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	CIK1	Q01649	594 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	RMT2	Q03305	412 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	YDL073W	Q07454	984 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	APC5	Q08683	685 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	5.43	□□□□□ -1.54	not detected
ECM1	YAL059W	REX3	Q12090	404 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	CFT2	Q12102	859 aa	Predicted RBP	5.43	□□□□□ -1.54
ECM1	YAL059W	PNS1	Q12412	539 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.43	□□□□□ -1.54	not detected
ECM1	YAL059W	RVB2	Q12464	471 aa	Known RBP	5.43	□□□□□ -1.54
ECM1	YAL059W	PAR32	Q12515	295 aa	Known RBP	5.43	□□□□□ -1.54
ECM1	YAL059W	SAC3	P46674	1301 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	PPR1	P07272	904 aa	Predicted RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	NCP1	P16603	691 aa	Known RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	REC107	P21651	314 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	ATP12	P22135	325 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	ERG3	P32353	365 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	CNS1	P33313	385 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	YKR018C	P36114	725 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	FAT1	P38225	669 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	YLF2	P38746	405 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	MIP6	P38760	659 aa	Known RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	YHR202W	P38887	602 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	NPR2	P39923	615 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	GDI1	P39958	451 aa	Known RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	RTT105	P40063	208 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	LYS14	P40971	790 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	HST1	P53685	503 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	CPR6	P53691	371 aa	Known RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	YNR061C	P53747	219 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	BNI5	P53890	448 aa	Known RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	ZDS2	P54786	942 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	ORC4	P54791	529 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	RPT6	Q01939	405 aa	Known RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	PEX25	Q02969	394 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	SWA2	Q06677	668 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	MCH5	Q08777	521 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	FRE5	Q08908	694 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	TRM8	Q12009	286 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	CWC2	Q12046	339 aa	Predicted RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	NFI1	Q12216	726 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	PGA3	Q12746	312 aa	Known RBP	5.42	□□□□□ -1.54
ECM1	YAL059W	CHD1	P32657	1468 aa		5.42	□□□□□ -1.54
ECM1	YAL059W	ARG3	P05150	338 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	ALG7	P07286	448 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	SGF29	P25554	259 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	ECM1	P39715	212 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	PUG1	P40100	303 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	SEC28	P40509	296 aa	Known RBP	5.41	□□□□□ -1.54
ECM1	YAL059W	YIR042C	P40586	236 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	MDE1	P47095	244 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	AMA1	P50082	593 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	ARE2	P53629	642 aa	Known RBP	5.41	□□□□□ -1.54
ECM1	YAL059W	ARP4	P80428	489 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	GAD1	Q04792	585 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	PSF3	Q12146	194 aa		5.41	□□□□□ -1.54
ECM1	YAL059W	TUF1	P02992	437 aa	Known RBP	5.4	□□□□□ -1.54
ECM1	YAL059W	ADE2	P21264	571 aa	Known RBP	5.4	□□□□□ -1.54
ECM1	YAL059W	APN1	P22936	367 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	CLB4	P24871	460 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	RIB7	P33312	244 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	IFA38	P38286	347 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	UTP9	P38882	575 aa	Known RBP	5.4	□□□□□ -1.54
ECM1	YAL059W	VPS41	P38959	992 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	EAF5	P39995	279 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	SCS2	P40075	244 aa	Known RBP	5.4	□□□□□ -1.54
ECM1	YAL059W	TEX1	P53851	422 aa	Known RBP	5.4	□□□□□ -1.54
ECM1	YAL059W	YDR131C	Q03899	556 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	RAD33	Q04231	177 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	RNH1	Q04740	348 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	SNO4	Q04902	237 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	ADY4	Q05955	493 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	HSP33	Q08914	237 aa	Known RBP	5.4	□□□□□ -1.54
ECM1	YAL059W	HSP32	Q08992	237 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	PLP2	Q12017	286 aa		5.4	□□□□□ -1.54
ECM1	YAL059W	PHO5	P00635	467 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	GCN4	P03069	281 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	LAT1	P12695	482 aa	Known RBP	5.39	□□□□□ -1.55
ECM1	YAL059W	OLE1	P21147	510 aa	Known RBP	5.39	□□□□□ -1.55
ECM1	YAL059W	GPI10	P30777	616 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	TGL1	P34163	548 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	LCB2	P40970	561 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	YJL055W	P47044	245 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	CTF18	P49956	741 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	RRT6	P53117	311 aa	Predicted RBP	5.39	□□□□□ -1.55
ECM1	YAL059W	SSL2	Q00578	843 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	ARG5,6	Q01217	863 aa		5.39	□□□□□ -1.55
ECM1	YAL059W	HOT1	Q03213	719 aa		5.39	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 86.1 ms