RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeastyeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTF4YPR135W HTA1P04911 132 aaKnown RBP4.31□□□□□ -1.72
CTF4YPR135W HTA2P04912 132 aa4.31□□□□□ -1.72
CTF4YPR135W ABP1P15891 592 aaKnown RBP4.31□□□□□ -1.72
CTF4YPR135W CHL1P22516 861 aaPredicted RBP4.3□□□□□ -1.72
CTF4YPR135W YEL023CP39992 682 aa4.3□□□□□ -1.72
CTF4YPR135W PRE3P38624 215 aa4.29□□□□□ -1.72
CTF4YPR135W PTC4P38089 393 aa4.27□□□□□ -1.73
CTF4YPR135W YDR344CQ05510 147 aa4.25□□□□□ -1.73
CTF4YPR135W PML39Q03760 334 aa4.22□□□□□ -1.73
CTF4YPR135W GRE2Q12068 342 aaKnown RBP4.22□□□□□ -1.73
CTF4YPR135W VRP1P37370 817 aa4.22□□□□□ -1.73
CTF4YPR135W ELP4Q02884 456 aaKnown RBP4.21□□□□□ -1.74
CTF4YPR135W MIF2P35201 549 aa4.2□□□□□ -1.74
CTF4YPR135W DNA2P38859 1522 aa4.19□□□□□ -1.74
CTF4YPR135W XDJ1P39102 459 aa4.19□□□□□ -1.74
CTF4YPR135W ATH1P48016 1211 aa4.18□□□□□ -1.74
CTF4YPR135W EDS1P38073 919 aa4.17□□□□□ -1.74
CTF4YPR135W MID1P41821 548 aa4.17□□□□□ -1.74
CTF4YPR135W PTC3P34221 468 aaKnown RBP4.16□□□□□ -1.74
CTF4YPR135W GUT1P32190 709 aa4.15□□□□□ -1.74
CTF4YPR135W MAK11P20484 414 aaKnown RBP4.14□□□□□ -1.75
CTF4YPR135W RAM2P29703 316 aa4.14□□□□□ -1.75
CTF4YPR135W ARH1P48360 493 aa4.14□□□□□ -1.75
CTF4YPR135W DPS1P04802 557 aaKnown RBP4.14□□□□□ -1.75
CTF4YPR135W NST1P53935 1240 aa4.13□□□□□ -1.75
CTF4YPR135W PEX29Q03370 554 aa4.13□□□□□ -1.75
CTF4YPR135W SOL3P38858 249 aa4.12□□□□□ -1.75
CTF4YPR135W COQ8P27697 501 aa4.1□□□□□ -1.75
CTF4YPR135W ILV3P39522 585 aaKnown RBP4.1□□□□□ -1.75
CTF4YPR135W SPT23P35210 1082 aa4.09□□□□□ -1.75
CTF4YPR135W KOG1P38873 1557 aa4.09□□□□□ -1.75
CTF4YPR135W MPH3P0CE00 602 aa4.08□□□□□ -1.76
CTF4YPR135W AI4P03878 556 aa4.08□□□□□ -1.76
CTF4YPR135W SWR1Q05471 1514 aa4.07□□□□□ -1.76
CTF4YPR135W HAP5Q02516 242 aa4.07□□□□□ -1.76
CTF4YPR135W SRC1Q03707 834 aa4.05□□□□□ -1.76
CTF4YPR135W BNI4P53858 892 aa4.04□□□□□ -1.76
CTF4YPR135W MPC54Q08550 464 aa4.04□□□□□ -1.76
CTF4YPR135W PTC2P39966 464 aaKnown RBP4.03□□□□□ -1.76
CTF4YPR135W YGR273CP53329 174 aa4.03□□□□□ -1.76
CTF4YPR135W YML082WQ04533 649 aaKnown RBP4.02□□□□□ -1.77
CTF4YPR135W NMA111P53920 997 aa4.01□□□□□ -1.77
CTF4YPR135W SLI15P38283 698 aa3.99□□□□□ -1.77
CTF4YPR135W SPA2P23201 1466 aaKnown RBP3.98□□□□□ -1.77
CTF4YPR135W RAS1P01119 309 aa3.97□□□□□ -1.77
CTF4YPR135W DPL1Q05567 589 aa3.97□□□□□ -1.77
CTF4YPR135W YPR015CQ12531 247 aa3.97□□□□□ -1.77
CTF4YPR135W NOP53Q12080 455 aaKnown RBP3.96□□□□□ -1.78
CTF4YPR135W RGA2Q06407 1009 aa3.94□□□□□ -1.78
CTF4YPR135W KEX1P09620 729 aa3.93□□□□□ -1.78
CTF4YPR135W CDC73Q06697 393 aa3.93□□□□□ -1.78
CTF4YPR135W RAM1P22007 431 aa3.92□□□□□ -1.78
CTF4YPR135W RGA1P39083 1007 aa3.92□□□□□ -1.78
CTF4YPR135W ISU2Q12056 156 aa3.92□□□□□ -1.78
CTF4YPR135W GYP1Q08484 637 aa3.91□□□□□ -1.78
CTF4YPR135W TY1B-DR4Q07793 1604 aa3.91□□□□□ -1.78
CTF4YPR135W PDR1P12383 1068 aa3.9□□□□□ -1.78
CTF4YPR135W AMS1P22855 1083 aa3.89□□□□□ -1.79
CTF4YPR135W TRK1P12685 1235 aa3.88□□□□□ -1.79
CTF4YPR135W VHR2P40041 505 aa3.88□□□□□ -1.79
CTF4YPR135W YLR326WQ06170 240 aaKnown RBP3.87□□□□□ -1.79
CTF4YPR135W SDH2P21801 266 aa3.87□□□□□ -1.79
CTF4YPR135W UBP14P38237 781 aaKnown RBP3.86□□□□□ -1.79
CTF4YPR135W RAD54P32863 898 aa3.85□□□□□ -1.79
CTF4YPR135W PCS60P38137 543 aaKnown RBP RIP-Chip data3.85□□□□□ -1.79not detected
CTF4YPR135W SET1P38827 1080 aaKnown RBP3.84□□□□□ -1.79
CTF4YPR135W SAS4Q04003 481 aa3.83□□□□□ -1.8
CTF4YPR135W YEL077CQ3E7X8 1277 aa3.82□□□□□ -1.8
CTF4YPR135W TCB3Q03640 1545 aaKnown RBP3.82□□□□□ -1.8
CTF4YPR135W RPP1BP10622 106 aaKnown RBP3.8□□□□□ -1.8
CTF4YPR135W BUD20Q08004 166 aaPredicted RBP3.8□□□□□ -1.8
CTF4YPR135W YRR1Q12172 810 aa3.8□□□□□ -1.8
CTF4YPR135W PRT1P06103 763 aaKnown RBP3.78□□□□□ -1.8
CTF4YPR135W MRF1P30775 413 aaPredicted RBP3.78□□□□□ -1.8
CTF4YPR135W STR2P47164 639 aa3.78□□□□□ -1.8
CTF4YPR135W PEX21P50091 288 aa3.78□□□□□ -1.8
CTF4YPR135W ISM1P48526 1002 aa3.77□□□□□ -1.81
CTF4YPR135W YDR090CQ03193 310 aa3.77□□□□□ -1.81
CTF4YPR135W KIC1P38692 1080 aa3.76□□□□□ -1.81
CTF4YPR135W AIR1P40507 360 aaKnown RBP3.75□□□□□ -1.81
CTF4YPR135W ERG12P07277 443 aa3.75□□□□□ -1.81
CTF4YPR135W NUD1P32336 851 aa3.75□□□□□ -1.81
CTF4YPR135W YPL062WQ02781 134 aa3.75□□□□□ -1.81
CTF4YPR135W TUM1Q08686 304 aaKnown RBP3.75□□□□□ -1.81
CTF4YPR135W CST6P40535 587 aa3.74□□□□□ -1.81
CTF4YPR135W CLA4P48562 842 aa3.74□□□□□ -1.81
CTF4YPR135W BRE2P43132 505 aa3.74□□□□□ -1.81
CTF4YPR135W GAP1P19145 602 aaPredicted RBP3.73□□□□□ -1.81
CTF4YPR135W GAR1P28007 205 aaKnown RBP3.73□□□□□ -1.81
CTF4YPR135W CSC1Q06538 782 aa3.73□□□□□ -1.81
CTF4YPR135W TFB4Q12004 338 aa3.73□□□□□ -1.81
CTF4YPR135W GCD11P32481 527 aaKnown RBP3.72□□□□□ -1.81
CTF4YPR135W NPL4P33755 580 aa3.72□□□□□ -1.81
CTF4YPR135W GBP2P25555 427 aaKnown RBP RIP-Chip data3.71□□□□□ -1.82not detected
CTF4YPR135W TY1A-DR4O74302 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-HP0C2I4 478 aaKnown RBP3.7□□□□□ -1.82
CTF4YPR135W TY1A-AP0CX57 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-PR1P0CX58 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-ORP0CX59 440 aa3.7□□□□□ -1.82
CTF4YPR135W TY1A-PR2P0CX60 440 aa3.7□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms