RNA–Protein interactions for RNA: YPR088C

SRP54, Transcript of Signal recognition particle (SRP) subunit (homolog of mammalian SRP54), yeastyeast

Gene SRP54, Length 1,626 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SRP54YPR088C SNT2P53127 1403 aa12.61□□□□□ -0.39
SRP54YPR088C PDR15Q04182 1529 aaKnown RBP12.6□□□□□ -0.39
SRP54YPR088C MET5P47169 1442 aa12.59□□□□□ -0.39
SRP54YPR088C NTE1Q04958 1679 aa12.59□□□□□ -0.39
SRP54YPR088C ULS1Q08562 1619 aa12.57□□□□□ -0.4
SRP54YPR088C RPO21P04050 1733 aaKnown RBP12.56□□□□□ -0.4
SRP54YPR088C NUP159P40477 1460 aa12.55□□□□□ -0.4
SRP54YPR088C IFH1P39520 1085 aa12.49□□□□□ -0.41
SRP54YPR088C RTT106P40161 455 aa12.48□□□□□ -0.41
SRP54YPR088C GEA1P47102 1408 aaPredicted RBP12.48□□□□□ -0.41
SRP54YPR088C GEA2P39993 1459 aaKnown RBP12.47□□□□□ -0.41
SRP54YPR088C YRF1-1P0CX20 1796 aa12.45□□□□□ -0.42
SRP54YPR088C YRF1-5P0CX21 1796 aa12.45□□□□□ -0.42
SRP54YPR088C YRF1-8P0CX22 1796 aa12.45□□□□□ -0.42
SRP54YPR088C IRC20Q06554 1556 aa12.4□□□□□ -0.42
SRP54YPR088C MET10P39692 1035 aa12.39□□□□□ -0.43
SRP54YPR088C VPS15P22219 1454 aa12.37□□□□□ -0.43
SRP54YPR088C PDR12Q02785 1511 aa12.36□□□□□ -0.43
SRP54YPR088C TY3B-GQ99315 1547 aa12.35□□□□□ -0.43
SRP54YPR088C LTE1P07866 1435 aa12.33□□□□□ -0.44
SRP54YPR088C CAT8P39113 1433 aa12.33□□□□□ -0.44
SRP54YPR088C IKI3Q06706 1349 aaKnown RBP12.32□□□□□ -0.44
SRP54YPR088C SPO14P36126 1683 aa12.32□□□□□ -0.44
SRP54YPR088C YBT1P32386 1661 aa12.29□□□□□ -0.44
SRP54YPR088C GDB1Q06625 1536 aa12.29□□□□□ -0.44
SRP54YPR088C NUP170P38181 1502 aa12.26□□□□□ -0.45
SRP54YPR088C NUP157P40064 1391 aaKnown RBP12.26□□□□□ -0.45
SRP54YPR088C PDR10P51533 1564 aa12.26□□□□□ -0.45
SRP54YPR088C IQG1Q12280 1495 aa12.17□□□□□ -0.46
SRP54YPR088C ARO1P08566 1588 aaKnown RBP12.16□□□□□ -0.46
SRP54YPR088C SSM4P40318 1319 aa12.15□□□□□ -0.46
SRP54YPR088C BUD3P25558 1636 aa12.14□□□□□ -0.47
SRP54YPR088C DRS2P39524 1355 aa12.14□□□□□ -0.47
SRP54YPR088C CKB1P43639 278 aa12.13□□□□□ -0.47
SRP54YPR088C SRB8P25648 1427 aa12.12□□□□□ -0.47
SRP54YPR088C BNI1P41832 1953 aa12.1□□□□□ -0.47
SRP54YPR088C ITT1Q04638 464 aa12.08□□□□□ -0.48
SRP54YPR088C YSP2Q06681 1438 aa12.08□□□□□ -0.48
SRP54YPR088C TRM3Q07527 1436 aa12.04□□□□□ -0.48
SRP54YPR088C SEC7P11075 2009 aaKnown RBP12.03□□□□□ -0.48
SRP54YPR088C DOP1Q03921 1698 aa12.02□□□□□ -0.48
SRP54YPR088C MMS1Q06211 1407 aa12.02□□□□□ -0.49
SRP54YPR088C BNR1P40450 1375 aa11.98□□□□□ -0.49
SRP54YPR088C BUD21Q08492 214 aaPredicted RBP11.97□□□□□ -0.49
SRP54YPR088C CHC1P22137 1653 aaKnown RBP11.93□□□□□ -0.5
SRP54YPR088C GCN2P15442 1659 aa11.87□□□□□ -0.51
SRP54YPR088C DNF2Q12675 1612 aa11.81□□□□□ -0.52
SRP54YPR088C YOR093CQ12275 1648 aa11.75□□□□□ -0.53
SRP54YPR088C NUP188P52593 1655 aaKnown RBP11.73□□□□□ -0.53
SRP54YPR088C PDR5P33302 1511 aaKnown RBP11.73□□□□□ -0.53
SRP54YPR088C URN1Q06525 465 aaKnown RBP11.72□□□□□ -0.53
SRP54YPR088C VMR1P38735 1592 aa11.7□□□□□ -0.54
SRP54YPR088C PAF1P38351 445 aa11.68□□□□□ -0.54
SRP54YPR088C ABP1P15891 592 aaKnown RBP11.67□□□□□ -0.54
SRP54YPR088C YAP3P38749 330 aa11.67□□□□□ -0.54
SRP54YPR088C NOP7P53261 605 aaKnown RBP11.67□□□□□ -0.54
SRP54YPR088C IML1P47170 1584 aa11.66□□□□□ -0.54
SRP54YPR088C IPL1P38991 367 aa11.64□□□□□ -0.55
SRP54YPR088C PDR11P40550 1411 aa11.63□□□□□ -0.55
SRP54YPR088C BFR2Q06631 534 aaKnown RBP11.62□□□□□ -0.55
SRP54YPR088C RAV1P47104 1357 aa11.6□□□□□ -0.55
SRP54YPR088C TYS1P36421 394 aaKnown RBP11.59□□□□□ -0.55
SRP54YPR088C DNF3Q12674 1656 aa11.57□□□□□ -0.56
SRP54YPR088C RTC1Q08281 1341 aa11.56□□□□□ -0.56
SRP54YPR088C HAP1P0CE41 1502 aa11.55□□□□□ -0.56
SRP54YPR088C POL5P39985 1022 aaKnown RBP11.44□□□□□ -0.58
SRP54YPR088C MAK10Q02197 733 aa11.44□□□□□ -0.58
SRP54YPR088C NUP192P47054 1683 aa11.44□□□□□ -0.58
SRP54YPR088C ESL2P36168 1195 aa11.42□□□□□ -0.58
SRP54YPR088C TAF5P38129 798 aa11.4□□□□□ -0.58
SRP54YPR088C MIF2P35201 549 aa11.39□□□□□ -0.59
SRP54YPR088C TY3B-IQ7LHG5 1498 aaKnown RBP11.38□□□□□ -0.59
SRP54YPR088C ALD4P46367 519 aaKnown RBP11.38□□□□□ -0.59
SRP54YPR088C BCK1Q01389 1478 aa11.37□□□□□ -0.59
SRP54YPR088C RAD9P14737 1309 aa11.34□□□□□ -0.59
SRP54YPR088C MRX12P47084 519 aa11.31□□□□□ -0.6
SRP54YPR088C ORC1P54784 914 aaPredicted RBP11.31□□□□□ -0.6
SRP54YPR088C CAB1Q04430 367 aa11.31□□□□□ -0.6
SRP54YPR088C KIP3P53086 805 aaKnown RBP11.31□□□□□ -0.6
SRP54YPR088C KRE5P22023 1365 aa11.3□□□□□ -0.6
SRP54YPR088C TY1B-NL2Q99337 1749 aaKnown RBP11.29□□□□□ -0.6
SRP54YPR088C CFT1Q06632 1357 aaKnown RBP11.28□□□□□ -0.6
SRP54YPR088C NAP1P25293 417 aaKnown RBP11.27□□□□□ -0.6
SRP54YPR088C TAF8Q03750 510 aa11.27□□□□□ -0.6
SRP54YPR088C USO1P25386 1790 aa11.27□□□□□ -0.6
SRP54YPR088C YLR419WQ06698 1435 aaKnown RBP11.27□□□□□ -0.61
SRP54YPR088C RIA1P53893 1110 aa11.27□□□□□ -0.61
SRP54YPR088C SPE2P21182 396 aa11.26□□□□□ -0.61
SRP54YPR088C SCT1P32784 759 aa11.26□□□□□ -0.61
SRP54YPR088C MHP1P43638 1398 aa11.23□□□□□ -0.61
SRP54YPR088C YMR196WQ04336 1088 aa11.21□□□□□ -0.61
SRP54YPR088C YNR029CP53729 429 aaKnown RBP11.18□□□□□ -0.62
SRP54YPR088C SEC3P33332 1336 aaKnown RBP11.15□□□□□ -0.62
SRP54YPR088C CHZ1P40019 153 aaPredicted RBP11.14□□□□□ -0.63
SRP54YPR088C THI12P42883 340 aa11.13□□□□□ -0.63
SRP54YPR088C THI5P43534 340 aa11.13□□□□□ -0.63
SRP54YPR088C THI11P47183 340 aa11.13□□□□□ -0.63
SRP54YPR088C PDS5Q04264 1277 aa11.13□□□□□ -0.63
SRP54YPR088C THI13Q07748 340 aa11.13□□□□□ -0.63
SRP54YPR088C RCM1P53972 490 aa11.11□□□□□ -0.63
Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms