RNA–Protein interactions for RNA: YNL278W

CAF120, Transcript of Part of the CCR4-NOT transcriptional regulatory complex, yeast

Gene CAF120, Length 3,183 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF120	YNL278W	ITT1	Q04638	464 aa		4.77	□□□□□ -1.65
CAF120	YNL278W	TRM732	Q03496	1420 aa		4.77	□□□□□ -1.65
CAF120	YNL278W	YOR1	P53049	1477 aa		4.77	□□□□□ -1.65
CAF120	YNL278W	HAP1	P0CE41	1502 aa		4.77	□□□□□ -1.65
CAF120	YNL278W	VPS15	P22219	1454 aa		4.77	□□□□□ -1.65
CAF120	YNL278W	DNF3	Q12674	1656 aa		4.76	□□□□□ -1.65
CAF120	YNL278W	SMC4	Q12267	1418 aa		4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-JR2	P47100	1755 aa	Known RBP	4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-ER2	Q03619	1755 aa		4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-MR1	Q04214	1755 aa		4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-MR2	Q04670	1755 aa	Known RBP	4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-LR1	Q12088	1755 aa	Known RBP	4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-NL1	Q12112	1755 aa		4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-GR1	Q12141	1755 aa		4.76	□□□□□ -1.65
CAF120	YNL278W	TY1B-BL	Q12490	1755 aa		4.76	□□□□□ -1.65
CAF120	YNL278W	SCC2	Q04002	1493 aa		4.73	□□□□□ -1.65
CAF120	YNL278W	RPO21	P04050	1733 aa	Known RBP	4.72	□□□□□ -1.65
CAF120	YNL278W	MMS22	Q06164	1454 aa		4.7	□□□□□ -1.66
CAF120	YNL278W	ULS1	Q08562	1619 aa		4.7	□□□□□ -1.66
CAF120	YNL278W	YBT1	P32386	1661 aa		4.68	□□□□□ -1.66
CAF120	YNL278W	UFD4	P33202	1483 aa		4.67	□□□□□ -1.66
CAF120	YNL278W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.67	□□□□□ -1.66
CAF120	YNL278W	TOP2	P06786	1428 aa	Known RBP	4.65	□□□□□ -1.66
CAF120	YNL278W	IQG1	Q12280	1495 aa		4.65	□□□□□ -1.67
CAF120	YNL278W	GDB1	Q06625	1536 aa		4.63	□□□□□ -1.67
CAF120	YNL278W	CHC1	P22137	1653 aa	Known RBP	4.62	□□□□□ -1.67
CAF120	YNL278W	PDR12	Q02785	1511 aa		4.62	□□□□□ -1.67
CAF120	YNL278W	BFR2	Q06631	534 aa	Known RBP	4.61	□□□□□ -1.67
CAF120	YNL278W	RQC2	Q12532	1038 aa	Known RBP	4.61	□□□□□ -1.67
CAF120	YNL278W	SNT2	P53127	1403 aa		4.6	□□□□□ -1.67
CAF120	YNL278W	GCN2	P15442	1659 aa		4.6	□□□□□ -1.67
CAF120	YNL278W	YTA7	P40340	1379 aa		4.6	□□□□□ -1.67
CAF120	YNL278W	SNQ2	P32568	1501 aa	Known RBP	4.58	□□□□□ -1.68
CAF120	YNL278W	BUD3	P25558	1636 aa		4.58	□□□□□ -1.68
CAF120	YNL278W	YRF1-2	P40105	1681 aa		4.57	□□□□□ -1.68
CAF120	YNL278W	ARO1	P08566	1588 aa	Known RBP	4.56	□□□□□ -1.68
CAF120	YNL278W	NUP159	P40477	1460 aa		4.56	□□□□□ -1.68
CAF120	YNL278W	TY3B-G	Q99315	1547 aa		4.55	□□□□□ -1.68
CAF120	YNL278W	PRY3	P47033	881 aa		4.55	□□□□□ -1.68
CAF120	YNL278W	IML1	P47170	1584 aa		4.52	□□□□□ -1.69
CAF120	YNL278W	TAF7	Q05021	590 aa		4.51	□□□□□ -1.69
CAF120	YNL278W	EDE1	P34216	1381 aa		4.51	□□□□□ -1.69
CAF120	YNL278W	VTH1	P40438	1549 aa		4.5	□□□□□ -1.69
CAF120	YNL278W	VTH2	P40890	1549 aa		4.5	□□□□□ -1.69
CAF120	YNL278W	CAT8	P39113	1433 aa		4.49	□□□□□ -1.69
CAF120	YNL278W	USO1	P25386	1790 aa		4.47	□□□□□ -1.69
CAF120	YNL278W	SPP41	P38904	1435 aa		4.47	□□□□□ -1.69
CAF120	YNL278W	BCK1	Q01389	1478 aa		4.46	□□□□□ -1.7
CAF120	YNL278W	GLN1	P32288	370 aa	Known RBP	4.45	□□□□□ -1.7
CAF120	YNL278W	AVT3	P36062	692 aa		4.41	□□□□□ -1.7
CAF120	YNL278W	YAH1	Q12184	172 aa	Known RBP	4.41	□□□□□ -1.7
CAF120	YNL278W	PRI1	P10363	409 aa		4.39	□□□□□ -1.71
CAF120	YNL278W	RRD1	P40454	393 aa	Known RBP	4.39	□□□□□ -1.71
CAF120	YNL278W	SSA1	P10591	642 aa	Known RBP	4.37	□□□□□ -1.71
CAF120	YNL278W	VMR1	P38735	1592 aa		4.37	□□□□□ -1.71
CAF120	YNL278W	NUP188	P52593	1655 aa	Known RBP	4.37	□□□□□ -1.71
CAF120	YNL278W	TSC11	P40061	1430 aa		4.36	□□□□□ -1.71
CAF120	YNL278W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.35	□□□□□ -1.71
CAF120	YNL278W	GEA1	P47102	1408 aa	Predicted RBP	4.32	□□□□□ -1.72
CAF120	YNL278W	DIP2	Q12220	943 aa	Predicted RBP	4.32	□□□□□ -1.72
CAF120	YNL278W	NUP192	P47054	1683 aa		4.31	□□□□□ -1.72
CAF120	YNL278W	IKI3	Q06706	1349 aa	Known RBP	4.3	□□□□□ -1.72
CAF120	YNL278W	SEC7	P11075	2009 aa	Known RBP	4.29	□□□□□ -1.72
CAF120	YNL278W	STH1	P32597	1359 aa		4.29	□□□□□ -1.72
CAF120	YNL278W	IOC4	Q04213	475 aa		4.27	□□□□□ -1.73
CAF120	YNL278W	APC1	P53886	1748 aa		4.26	□□□□□ -1.73
CAF120	YNL278W	GTT3	P39996	337 aa		4.25	□□□□□ -1.73
CAF120	YNL278W	BNR1	P40450	1375 aa		4.25	□□□□□ -1.73
CAF120	YNL278W	AAD16	Q02895	342 aa		4.25	□□□□□ -1.73
CAF120	YNL278W	YMR074C	Q04773	145 aa		4.25	□□□□□ -1.73
CAF120	YNL278W	SRB8	P25648	1427 aa		4.24	□□□□□ -1.73
CAF120	YNL278W	YMR196W	Q04336	1088 aa		4.24	□□□□□ -1.73
CAF120	YNL278W	DMA1	P38823	416 aa		4.22	□□□□□ -1.73
CAF120	YNL278W	RRP5	Q05022	1729 aa	Known RBP	4.2	□□□□□ -1.74
CAF120	YNL278W	SNF2	P22082	1703 aa		4.19	□□□□□ -1.74
CAF120	YNL278W	POM152	P39685	1337 aa		4.18	□□□□□ -1.74
CAF120	YNL278W	YLR419W	Q06698	1435 aa	Known RBP	4.17	□□□□□ -1.74
CAF120	YNL278W	YIL055C	P40523	627 aa	Known RBP	4.16	□□□□□ -1.74
CAF120	YNL278W	ISW2	Q08773	1120 aa		4.15	□□□□□ -1.74
CAF120	YNL278W	LEO1	P38439	464 aa		4.14	□□□□□ -1.75
CAF120	YNL278W	YSP2	Q06681	1438 aa		4.14	□□□□□ -1.75
CAF120	YNL278W	MAK10	Q02197	733 aa		4.12	□□□□□ -1.75
CAF120	YNL278W	ENV9	Q08651	330 aa		4.11	□□□□□ -1.75
CAF120	YNL278W	CFT1	Q06632	1357 aa	Known RBP	4.1	□□□□□ -1.75
CAF120	YNL278W	HAA1	Q12753	694 aa	Known RBP	4.1	□□□□□ -1.75
CAF120	YNL278W	RPG1	P38249	964 aa	Known RBP	4.09	□□□□□ -1.76
CAF120	YNL278W	YRF1-4	O13559	1382 aa		4.08	□□□□□ -1.76
CAF120	YNL278W	YML133C	Q03099	1374 aa		4.08	□□□□□ -1.76
CAF120	YNL278W	YLL067C	Q07888	1374 aa		4.08	□□□□□ -1.76
CAF120	YNL278W	YLL066C	Q99208	1374 aa		4.08	□□□□□ -1.76
CAF120	YNL278W	MLP1	Q02455	1875 aa	Known RBP	4.08	□□□□□ -1.76
CAF120	YNL278W	TSR3	Q12094	313 aa	Known RBP	4.06	□□□□□ -1.76
CAF120	YNL278W	URN1	Q06525	465 aa	Known RBP	4.05	□□□□□ -1.76
CAF120	YNL278W	NUP157	P40064	1391 aa	Known RBP	4.05	□□□□□ -1.76
CAF120	YNL278W	RAV1	P47104	1357 aa		4.04	□□□□□ -1.76
CAF120	YNL278W	URB1	P34241	1764 aa	Known RBP	4.02	□□□□□ -1.77
CAF120	YNL278W	YKR023W	P36119	530 aa	Known RBP	4.01	□□□□□ -1.77
CAF120	YNL278W	MET10	P39692	1035 aa		4.01	□□□□□ -1.77
CAF120	YNL278W	YAP3	P38749	330 aa		4	□□□□□ -1.77
CAF120	YNL278W	SSM4	P40318	1319 aa		3.99	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms