RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W ULS1Q08562 1619 aa8.97□□□□□ -0.97
ATG4YNL223W TAF7Q05021 590 aa8.96□□□□□ -0.97
ATG4YNL223W TRM732Q03496 1420 aa8.96□□□□□ -0.98
ATG4YNL223W SNT2P53127 1403 aa8.94□□□□□ -0.98
ATG4YNL223W NTE1Q04958 1679 aa8.93□□□□□ -0.98
ATG4YNL223W RPO21P04050 1733 aaKnown RBP8.9□□□□□ -0.98
ATG4YNL223W GEA1P47102 1408 aaPredicted RBP8.87□□□□□ -0.99
ATG4YNL223W NUP159P40477 1460 aa8.85□□□□□ -0.99
ATG4YNL223W MET5P47169 1442 aa8.85□□□□□ -0.99
ATG4YNL223W IFH1P39520 1085 aa8.84□□□□□ -0.99
ATG4YNL223W GEA2P39993 1459 aaKnown RBP8.83□□□□□ -1
ATG4YNL223W IRC20Q06554 1556 aa8.82□□□□□ -1
ATG4YNL223W PRI1P10363 409 aa8.82□□□□□ -1
ATG4YNL223W TY3B-GQ99315 1547 aa8.82□□□□□ -1
ATG4YNL223W YRF1-1P0CX20 1796 aa8.81□□□□□ -1
ATG4YNL223W YRF1-5P0CX21 1796 aa8.81□□□□□ -1
ATG4YNL223W YRF1-8P0CX22 1796 aa8.81□□□□□ -1
ATG4YNL223W DIP2Q12220 943 aaPredicted RBP8.8□□□□□ -1
ATG4YNL223W IKI3Q06706 1349 aaKnown RBP8.79□□□□□ -1
ATG4YNL223W RTT106P40161 455 aa8.78□□□□□ -1
ATG4YNL223W NUP170P38181 1502 aa8.78□□□□□ -1
ATG4YNL223W YBT1P32386 1661 aa8.77□□□□□ -1.01
ATG4YNL223W VPS15P22219 1454 aa8.76□□□□□ -1.01
ATG4YNL223W PDR12Q02785 1511 aa8.74□□□□□ -1.01
ATG4YNL223W ISW2Q08773 1120 aa8.74□□□□□ -1.01
ATG4YNL223W SPO14P36126 1683 aa8.74□□□□□ -1.01
ATG4YNL223W CAT8P39113 1433 aa8.73□□□□□ -1.01
ATG4YNL223W AAD16Q02895 342 aa8.73□□□□□ -1.01
ATG4YNL223W MET10P39692 1035 aa8.72□□□□□ -1.01
ATG4YNL223W GDB1Q06625 1536 aa8.72□□□□□ -1.01
ATG4YNL223W PDR10P51533 1564 aa8.7□□□□□ -1.02
ATG4YNL223W PRY3P47033 881 aa8.69□□□□□ -1.02
ATG4YNL223W SSM4P40318 1319 aa8.68□□□□□ -1.02
ATG4YNL223W NUP157P40064 1391 aaKnown RBP8.66□□□□□ -1.02
ATG4YNL223W ARO1P08566 1588 aaKnown RBP8.66□□□□□ -1.02
ATG4YNL223W RPG1P38249 964 aaKnown RBP8.64□□□□□ -1.03
ATG4YNL223W LTE1P07866 1435 aa8.64□□□□□ -1.03
ATG4YNL223W IQG1Q12280 1495 aa8.59□□□□□ -1.03
ATG4YNL223W SRB8P25648 1427 aa8.59□□□□□ -1.03
ATG4YNL223W BUD3P25558 1636 aa8.59□□□□□ -1.03
ATG4YNL223W AVT3P36062 692 aa8.57□□□□□ -1.04
ATG4YNL223W CKB1P43639 278 aa8.57□□□□□ -1.04
ATG4YNL223W YSP2Q06681 1438 aa8.56□□□□□ -1.04
ATG4YNL223W BFR2Q06631 534 aaKnown RBP8.53□□□□□ -1.04
ATG4YNL223W DRS2P39524 1355 aa8.51□□□□□ -1.05
ATG4YNL223W BNI1P41832 1953 aa8.5□□□□□ -1.05
ATG4YNL223W DOP1Q03921 1698 aa8.5□□□□□ -1.05
ATG4YNL223W MMS1Q06211 1407 aa8.5□□□□□ -1.05
ATG4YNL223W TRM3Q07527 1436 aa8.48□□□□□ -1.05
ATG4YNL223W SEC7P11075 2009 aaKnown RBP8.47□□□□□ -1.05
ATG4YNL223W GCN2P15442 1659 aa8.47□□□□□ -1.05
ATG4YNL223W BNR1P40450 1375 aa8.46□□□□□ -1.05
ATG4YNL223W ITT1Q04638 464 aa8.46□□□□□ -1.05
ATG4YNL223W BUD21Q08492 214 aaPredicted RBP8.46□□□□□ -1.05
ATG4YNL223W CHC1P22137 1653 aaKnown RBP8.46□□□□□ -1.05
ATG4YNL223W YOR093CQ12275 1648 aa8.38□□□□□ -1.07
ATG4YNL223W PDR5P33302 1511 aaKnown RBP8.35□□□□□ -1.07
ATG4YNL223W VMR1P38735 1592 aa8.33□□□□□ -1.08
ATG4YNL223W TSR3Q12094 313 aaKnown RBP8.33□□□□□ -1.08
ATG4YNL223W NUP188P52593 1655 aaKnown RBP8.33□□□□□ -1.08
ATG4YNL223W DNF2Q12675 1612 aa8.32□□□□□ -1.08
ATG4YNL223W IML1P47170 1584 aa8.28□□□□□ -1.08
ATG4YNL223W PDR11P40550 1411 aa8.28□□□□□ -1.08
ATG4YNL223W NOP7P53261 605 aaKnown RBP8.27□□□□□ -1.09
ATG4YNL223W PAF1P38351 445 aa8.26□□□□□ -1.09
ATG4YNL223W YCK3P39962 524 aa8.26□□□□□ -1.09
ATG4YNL223W RAV1P47104 1357 aa8.24□□□□□ -1.09
ATG4YNL223W URN1Q06525 465 aaKnown RBP8.21□□□□□ -1.09
ATG4YNL223W IPL1P38991 367 aa8.2□□□□□ -1.1
ATG4YNL223W RTC1Q08281 1341 aa8.2□□□□□ -1.1
ATG4YNL223W TYS1P36421 394 aaKnown RBP8.19□□□□□ -1.1
ATG4YNL223W YAP3P38749 330 aa8.19□□□□□ -1.1
ATG4YNL223W HAA1Q12753 694 aaKnown RBP8.19□□□□□ -1.1
ATG4YNL223W RPL17AP05740 184 aaKnown RBP8.17□□□□□ -1.1
ATG4YNL223W POL5P39985 1022 aaKnown RBP8.17□□□□□ -1.1
ATG4YNL223W RPL17BP46990 184 aaKnown RBP8.17□□□□□ -1.1
ATG4YNL223W NUP192P47054 1683 aa8.17□□□□□ -1.1
ATG4YNL223W DNF3Q12674 1656 aa8.17□□□□□ -1.1
ATG4YNL223W HAP1P0CE41 1502 aa8.16□□□□□ -1.1
ATG4YNL223W TY3B-IQ7LHG5 1498 aaKnown RBP8.13□□□□□ -1.11
ATG4YNL223W ABP1P15891 592 aaKnown RBP8.12□□□□□ -1.11
ATG4YNL223W REB1P21538 810 aa8.1□□□□□ -1.11
ATG4YNL223W ESL2P36168 1195 aa8.09□□□□□ -1.11
ATG4YNL223W TAF5P38129 798 aa8.09□□□□□ -1.11
ATG4YNL223W ORC1P54784 914 aaPredicted RBP8.06□□□□□ -1.12
ATG4YNL223W BCK1Q01389 1478 aa8.05□□□□□ -1.12
ATG4YNL223W RAD9P14737 1309 aa8.04□□□□□ -1.12
ATG4YNL223W ALD4P46367 519 aaKnown RBP8.04□□□□□ -1.12
ATG4YNL223W YLR419WQ06698 1435 aaKnown RBP8.04□□□□□ -1.12
ATG4YNL223W KIP3P53086 805 aaKnown RBP8.03□□□□□ -1.12
ATG4YNL223W MAK10Q02197 733 aa8.03□□□□□ -1.12
ATG4YNL223W MHP1P43638 1398 aa8.02□□□□□ -1.13
ATG4YNL223W MRPL32P25348 183 aa8.01□□□□□ -1.13
ATG4YNL223W CAB1Q04430 367 aa8□□□□□ -1.13
ATG4YNL223W TAF8Q03750 510 aa7.99□□□□□ -1.13
ATG4YNL223W KRE5P22023 1365 aa7.98□□□□□ -1.13
ATG4YNL223W SPE2P21182 396 aa7.98□□□□□ -1.13
ATG4YNL223W SEC3P33332 1336 aaKnown RBP7.98□□□□□ -1.13
ATG4YNL223W CFT1Q06632 1357 aaKnown RBP7.97□□□□□ -1.13
ATG4YNL223W TY1B-NL2Q99337 1749 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms