RNA–Protein interactions for RNA: YKR094C

RPL40B, Transcript of Ubiquitin-ribosomal 60S subunit protein L40B fusion protein, yeastyeast

Gene RPL40B, Length 387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPL40BYKR094C YDL129WQ07555 291 aa8□□□□□ -1.13
RPL40BYKR094C PTC4P38089 393 aa7.98□□□□□ -1.13
RPL40BYKR094C GRE2Q12068 342 aaKnown RBP7.94□□□□□ -1.14
RPL40BYKR094C RAM2P29703 316 aa7.93□□□□□ -1.14
RPL40BYKR094C MIF2P35201 549 aa7.93□□□□□ -1.14
RPL40BYKR094C CHL1P22516 861 aaPredicted RBP7.92□□□□□ -1.14
RPL40BYKR094C MAK11P20484 414 aaKnown RBP7.91□□□□□ -1.14
RPL40BYKR094C PRE3P38624 215 aa7.91□□□□□ -1.14
RPL40BYKR094C BCK2P33306 851 aa7.9□□□□□ -1.14
RPL40BYKR094C EDS1P38073 919 aa7.9□□□□□ -1.14
RPL40BYKR094C YDR344CQ05510 147 aa7.88□□□□□ -1.15
RPL40BYKR094C PTC3P34221 468 aaKnown RBP7.87□□□□□ -1.15
RPL40BYKR094C ATH1P48016 1211 aa7.87□□□□□ -1.15
RPL40BYKR094C PML39Q03760 334 aa7.86□□□□□ -1.15
RPL40BYKR094C GUT1P32190 709 aa7.84□□□□□ -1.15
RPL40BYKR094C COQ8P27697 501 aa7.82□□□□□ -1.16
RPL40BYKR094C NST1P53935 1240 aa7.8□□□□□ -1.16
RPL40BYKR094C ELP4Q02884 456 aaKnown RBP7.78□□□□□ -1.16
RPL40BYKR094C SOL3P38858 249 aa7.77□□□□□ -1.17
RPL40BYKR094C MID1P41821 548 aa7.76□□□□□ -1.17
RPL40BYKR094C VRP1P37370 817 aa7.75□□□□□ -1.17
RPL40BYKR094C ARH1P48360 493 aa7.71□□□□□ -1.18
RPL40BYKR094C MPH3P0CE00 602 aa7.7□□□□□ -1.18
RPL40BYKR094C XDJ1P39102 459 aa7.7□□□□□ -1.18
RPL40BYKR094C ILV3P39522 585 aaKnown RBP7.7□□□□□ -1.18
RPL40BYKR094C AI4P03878 556 aa7.69□□□□□ -1.18
RPL40BYKR094C PEX29Q03370 554 aa7.68□□□□□ -1.18
RPL40BYKR094C YGR273CP53329 174 aa7.63□□□□□ -1.19
RPL40BYKR094C SPT23P35210 1082 aa7.62□□□□□ -1.19
RPL40BYKR094C HAP5Q02516 242 aa7.61□□□□□ -1.19
RPL40BYKR094C NOP53Q12080 455 aaKnown RBP7.6□□□□□ -1.19
RPL40BYKR094C MPC54Q08550 464 aa7.59□□□□□ -1.19
RPL40BYKR094C DPS1P04802 557 aaKnown RBP7.57□□□□□ -1.2
RPL40BYKR094C BNI4P53858 892 aa7.55□□□□□ -1.2
RPL40BYKR094C SLI15P38283 698 aa7.54□□□□□ -1.2
RPL40BYKR094C PTC2P39966 464 aaKnown RBP7.52□□□□□ -1.21
RPL40BYKR094C NMA111P53920 997 aa7.51□□□□□ -1.21
RPL40BYKR094C YML082WQ04533 649 aaKnown RBP7.5□□□□□ -1.21
RPL40BYKR094C DPL1Q05567 589 aa7.48□□□□□ -1.21
RPL40BYKR094C KEX1P09620 729 aa7.47□□□□□ -1.21
RPL40BYKR094C SET1P38827 1080 aaKnown RBP7.43□□□□□ -1.22
RPL40BYKR094C YPR015CQ12531 247 aa7.43□□□□□ -1.22
RPL40BYKR094C SRC1Q03707 834 aa7.41□□□□□ -1.22
RPL40BYKR094C CDC73Q06697 393 aa7.41□□□□□ -1.22
RPL40BYKR094C YLR326WQ06170 240 aaKnown RBP7.4□□□□□ -1.22
RPL40BYKR094C ISU2Q12056 156 aa7.39□□□□□ -1.23
RPL40BYKR094C RAM1P22007 431 aa7.38□□□□□ -1.23
RPL40BYKR094C UBP14P38237 781 aaKnown RBP7.38□□□□□ -1.23
RPL40BYKR094C VHR2P40041 505 aa7.38□□□□□ -1.23
RPL40BYKR094C PCS60P38137 543 aaKnown RBP RIP-Chip data7.34□□□□□ -1.23not detected
RPL40BYKR094C RAS1P01119 309 aa7.33□□□□□ -1.24
RPL40BYKR094C PDR1P12383 1068 aa7.32□□□□□ -1.24
RPL40BYKR094C RAD54P32863 898 aa7.31□□□□□ -1.24
RPL40BYKR094C GYP1Q08484 637 aa7.29□□□□□ -1.24
RPL40BYKR094C YDR090CQ03193 310 aa7.24□□□□□ -1.25
RPL40BYKR094C SDH2P21801 266 aa7.23□□□□□ -1.25
RPL40BYKR094C RPP1BP10622 106 aaKnown RBP7.22□□□□□ -1.25
RPL40BYKR094C AMS1P22855 1083 aa7.22□□□□□ -1.25
RPL40BYKR094C KIC1P38692 1080 aa7.19□□□□□ -1.26
RPL40BYKR094C SAS4Q04003 481 aa7.19□□□□□ -1.26
RPL40BYKR094C IFH1P39520 1085 aa7.18□□□□□ -1.26
RPL40BYKR094C YRR1Q12172 810 aa7.18□□□□□ -1.26
RPL40BYKR094C TRK1P12685 1235 aa7.15□□□□□ -1.26
RPL40BYKR094C GAP1P19145 602 aaPredicted RBP7.15□□□□□ -1.26
RPL40BYKR094C PEX21P50091 288 aa7.15□□□□□ -1.26
RPL40BYKR094C BUD20Q08004 166 aaPredicted RBP7.15□□□□□ -1.26
RPL40BYKR094C STR2P47164 639 aa7.14□□□□□ -1.27
RPL40BYKR094C YPR148CQ06523 435 aa7.14□□□□□ -1.27
RPL40BYKR094C REF2P42073 533 aaPredicted RBP7.13□□□□□ -1.27
RPL40BYKR094C YEL077CQ3E7X8 1277 aa7.13□□□□□ -1.27
RPL40BYKR094C ISM1P48526 1002 aa7.12□□□□□ -1.27
RPL40BYKR094C PRT1P06103 763 aaKnown RBP7.11□□□□□ -1.27
RPL40BYKR094C CSC1Q06538 782 aa7.11□□□□□ -1.27
RPL40BYKR094C TUM1Q08686 304 aaKnown RBP7.11□□□□□ -1.27
RPL40BYKR094C TFB4Q12004 338 aa7.11□□□□□ -1.27
RPL40BYKR094C NUD1P32336 851 aa7.1□□□□□ -1.27
RPL40BYKR094C MRF1P30775 413 aaPredicted RBP7.09□□□□□ -1.27
RPL40BYKR094C ORC6P38826 435 aa7.09□□□□□ -1.27
RPL40BYKR094C RGA1P39083 1007 aa7.07□□□□□ -1.28
RPL40BYKR094C VPS70P47161 811 aa7.07□□□□□ -1.28
RPL40BYKR094C RGA2Q06407 1009 aa7.06□□□□□ -1.28
RPL40BYKR094C TY1A-DR4O74302 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-HP0C2I4 478 aaKnown RBP7.03□□□□□ -1.28
RPL40BYKR094C TY1A-AP0CX57 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-PR1P0CX58 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-ORP0CX59 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-PR2P0CX60 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-DR5P0CX65 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-ER2P0CX66 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-GR3P0CX67 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-LR1P0CX68 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-MR2P0CX69 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-JR2P47099 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-DR1Q03856 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-ML1Q04706 440 aaKnown RBP7.03□□□□□ -1.28
RPL40BYKR094C TY1A-BRQ12217 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-NL2Q12470 440 aa7.03□□□□□ -1.28
RPL40BYKR094C TY1A-GR2Q12485 440 aa7.03□□□□□ -1.28
RPL40BYKR094C ERG12P07277 443 aa7.02□□□□□ -1.29
RPL40BYKR094C NPL4P33755 580 aa7.02□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 26 ms