RNA–Protein interactions for RNA: YKR056W

TRM2, Transcript of tRNA methyltransferase, yeast

Gene TRM2, Length 1,920 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM2	YKR056W	PTC4	P38089	393 aa		5.48	□□□□□ -1.53
TRM2	YKR056W	RTG3	P38165	486 aa		5.47	□□□□□ -1.53
TRM2	YKR056W	DCW1	P36091	449 aa		5.46	□□□□□ -1.53
TRM2	YKR056W	YEL023C	P39992	682 aa		5.46	□□□□□ -1.54
TRM2	YKR056W	RGA1	P39083	1007 aa		5.44	□□□□□ -1.54
TRM2	YKR056W	ELP4	Q02884	456 aa	Known RBP	5.44	□□□□□ -1.54
TRM2	YKR056W	YDR344C	Q05510	147 aa		5.42	□□□□□ -1.54
TRM2	YKR056W	PML39	Q03760	334 aa		5.38	□□□□□ -1.55
TRM2	YKR056W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.38	□□□□□ -1.55	not detected
TRM2	YKR056W	SRC1	Q03707	834 aa		5.35	□□□□□ -1.55
TRM2	YKR056W	CST9	Q06032	482 aa		5.35	□□□□□ -1.55
TRM2	YKR056W	RQC2	Q12532	1038 aa	Known RBP	5.33	□□□□□ -1.56
TRM2	YKR056W	ARH1	P48360	493 aa		5.32	□□□□□ -1.56
TRM2	YKR056W	RCR1	P38212	213 aa		5.31	□□□□□ -1.56
TRM2	YKR056W	SSP1	P38871	571 aa		5.29	□□□□□ -1.56
TRM2	YKR056W	SPT23	P35210	1082 aa		5.28	□□□□□ -1.56
TRM2	YKR056W	MGA2	P40578	1113 aa		5.27	□□□□□ -1.57
TRM2	YKR056W	GRE2	Q12068	342 aa	Known RBP	5.27	□□□□□ -1.57
TRM2	YKR056W	MID1	P41821	548 aa		5.25	□□□□□ -1.57
TRM2	YKR056W	PEX29	Q03370	554 aa		5.23	□□□□□ -1.57
TRM2	YKR056W	ATH1	P48016	1211 aa		5.19	□□□□□ -1.58
TRM2	YKR056W	HAP5	Q02516	242 aa		5.19	□□□□□ -1.58
TRM2	YKR056W	PTC2	P39966	464 aa	Known RBP	5.17	□□□□□ -1.58
TRM2	YKR056W	BNI4	P53858	892 aa		5.17	□□□□□ -1.58
TRM2	YKR056W	YML082W	Q04533	649 aa	Known RBP	5.17	□□□□□ -1.58
TRM2	YKR056W	GUT1	P32190	709 aa		5.16	□□□□□ -1.58
TRM2	YKR056W	RAS1	P01119	309 aa		5.15	□□□□□ -1.58
TRM2	YKR056W	MIF2	P35201	549 aa		5.13	□□□□□ -1.59
TRM2	YKR056W	NST1	P53935	1240 aa		5.12	□□□□□ -1.59
TRM2	YKR056W	PTC3	P34221	468 aa	Known RBP	5.11	□□□□□ -1.59
TRM2	YKR056W	MPH3	P0CE00	602 aa		5.1	□□□□□ -1.59
TRM2	YKR056W	TRK1	P12685	1235 aa		5.1	□□□□□ -1.59
TRM2	YKR056W	AI4	P03878	556 aa		5.09	□□□□□ -1.6
TRM2	YKR056W	SOL3	P38858	249 aa		5.07	□□□□□ -1.6
TRM2	YKR056W	TAF7	Q05021	590 aa		5.07	□□□□□ -1.6
TRM2	YKR056W	EDS1	P38073	919 aa		5.06	□□□□□ -1.6
TRM2	YKR056W	MPC54	Q08550	464 aa		5.06	□□□□□ -1.6
TRM2	YKR056W	DMA1	P38823	416 aa		5.05	□□□□□ -1.6
TRM2	YKR056W	YPL062W	Q02781	134 aa		5.05	□□□□□ -1.6
TRM2	YKR056W	NMA111	P53920	997 aa		5.04	□□□□□ -1.6
TRM2	YKR056W	ILV3	P39522	585 aa	Known RBP	5.03	□□□□□ -1.6
TRM2	YKR056W	AMS1	P22855	1083 aa		5.03	□□□□□ -1.6
TRM2	YKR056W	MAK11	P20484	414 aa	Known RBP	5.01	□□□□□ -1.61
TRM2	YKR056W	GYP1	Q08484	637 aa		5	□□□□□ -1.61
TRM2	YKR056W	YPR015C	Q12531	247 aa		4.99	□□□□□ -1.61
TRM2	YKR056W	DPL1	Q05567	589 aa		4.97	□□□□□ -1.61
TRM2	YKR056W	COQ8	P27697	501 aa		4.95	□□□□□ -1.62
TRM2	YKR056W	YGR273C	P53329	174 aa		4.94	□□□□□ -1.62
TRM2	YKR056W	RAM1	P22007	431 aa		4.93	□□□□□ -1.62
TRM2	YKR056W	SLI15	P38283	698 aa		4.93	□□□□□ -1.62
TRM2	YKR056W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
TRM2	YKR056W	RAM2	P29703	316 aa		4.93	□□□□□ -1.62
TRM2	YKR056W	GAR1	P28007	205 aa	Known RBP	4.91	□□□□□ -1.62
TRM2	YKR056W	YEL077C	Q3E7X8	1277 aa		4.91	□□□□□ -1.62
TRM2	YKR056W	SAS4	Q04003	481 aa		4.9	□□□□□ -1.62
TRM2	YKR056W	ISU2	Q12056	156 aa		4.9	□□□□□ -1.62
TRM2	YKR056W	SDH2	P21801	266 aa		4.89	□□□□□ -1.63
TRM2	YKR056W	BRE2	P43132	505 aa		4.86	□□□□□ -1.63
TRM2	YKR056W	GCR2	Q01722	534 aa		4.84	□□□□□ -1.63
TRM2	YKR056W	PDR1	P12383	1068 aa		4.84	□□□□□ -1.64
TRM2	YKR056W	LEO1	P38439	464 aa		4.84	□□□□□ -1.64
TRM2	YKR056W	MRF1	P30775	413 aa	Predicted RBP	4.83	□□□□□ -1.64
TRM2	YKR056W	CDC73	Q06697	393 aa		4.82	□□□□□ -1.64
TRM2	YKR056W	NOP53	Q12080	455 aa	Known RBP	4.82	□□□□□ -1.64
TRM2	YKR056W	KEX1	P09620	729 aa		4.78	□□□□□ -1.64
TRM2	YKR056W	AIR1	P40507	360 aa	Known RBP	4.77	□□□□□ -1.65
TRM2	YKR056W	ERG12	P07277	443 aa		4.75	□□□□□ -1.65
TRM2	YKR056W	PRT1	P06103	763 aa	Known RBP	4.73	□□□□□ -1.65
TRM2	YKR056W	CLA4	P48562	842 aa		4.72	□□□□□ -1.65
TRM2	YKR056W	BUD20	Q08004	166 aa	Predicted RBP	4.72	□□□□□ -1.65
TRM2	YKR056W	MET22	P32179	357 aa		4.7	□□□□□ -1.66
TRM2	YKR056W	RPP1B	P10622	106 aa	Known RBP	4.7	□□□□□ -1.66
TRM2	YKR056W	CST6	P40535	587 aa		4.7	□□□□□ -1.66
TRM2	YKR056W	ENV9	Q08651	330 aa		4.68	□□□□□ -1.66
TRM2	YKR056W	CDC4	P07834	779 aa		4.66	□□□□□ -1.66
TRM2	YKR056W	YLR326W	Q06170	240 aa	Known RBP	4.66	□□□□□ -1.66
TRM2	YKR056W	SAS10	Q12136	610 aa	Predicted RBP	4.66	□□□□□ -1.66
TRM2	YKR056W	LAM6	Q08001	693 aa		4.65	□□□□□ -1.67
TRM2	YKR056W	STR2	P47164	639 aa		4.64	□□□□□ -1.67
TRM2	YKR056W	YDR444W	Q04093	687 aa		4.64	□□□□□ -1.67
TRM2	YKR056W	YRR1	Q12172	810 aa		4.64	□□□□□ -1.67
TRM2	YKR056W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
TRM2	YKR056W	LEU3	P08638	886 aa		4.63	□□□□□ -1.67
TRM2	YKR056W	RAD54	P32863	898 aa		4.63	□□□□□ -1.67
TRM2	YKR056W	UBP14	P38237	781 aa	Known RBP	4.63	□□□□□ -1.67
TRM2	YKR056W	VHR2	P40041	505 aa		4.63	□□□□□ -1.67
TRM2	YKR056W	ISM1	P48526	1002 aa		4.63	□□□□□ -1.67
TRM2	YKR056W	PEX21	P50091	288 aa		4.63	□□□□□ -1.67
TRM2	YKR056W	FRK1	Q03002	865 aa	Predicted RBP	4.63	□□□□□ -1.67
TRM2	YKR056W	SPT16	P32558	1035 aa	Known RBP	4.62	□□□□□ -1.67
TRM2	YKR056W	NUD1	P32336	851 aa		4.59	□□□□□ -1.67
TRM2	YKR056W	NPL4	P33755	580 aa		4.59	□□□□□ -1.67
TRM2	YKR056W	MTC5	Q03897	1148 aa		4.58	□□□□□ -1.68
TRM2	YKR056W	GCD11	P32481	527 aa	Known RBP	4.58	□□□□□ -1.68
TRM2	YKR056W	YDL176W	Q12027	708 aa		4.58	□□□□□ -1.68
TRM2	YKR056W	LCB5	Q06147	687 aa	Known RBP	4.57	□□□□□ -1.68
TRM2	YKR056W	BDP1	P46678	594 aa		4.56	□□□□□ -1.68
TRM2	YKR056W	HED1	Q03937	162 aa		4.56	□□□□□ -1.68
TRM2	YKR056W	TUM1	Q08686	304 aa	Known RBP	4.55	□□□□□ -1.68
TRM2	YKR056W	TFB4	Q12004	338 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 35.8 ms