RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	TY1B-GR1	Q12141	1755 aa		7.56	□□□□□ -1.2
DOA1	YKL213C	TY1B-BL	Q12490	1755 aa		7.56	□□□□□ -1.2
DOA1	YKL213C	MYO4	P32492	1471 aa		7.56	□□□□□ -1.2
DOA1	YKL213C	VTH1	P40438	1549 aa		7.55	□□□□□ -1.2
DOA1	YKL213C	VTH2	P40890	1549 aa		7.55	□□□□□ -1.2
DOA1	YKL213C	BFR2	Q06631	534 aa	Known RBP	7.54	□□□□□ -1.2
DOA1	YKL213C	NTE1	Q04958	1679 aa		7.54	□□□□□ -1.2
DOA1	YKL213C	VPS15	P22219	1454 aa		7.53	□□□□□ -1.2
DOA1	YKL213C	RPO21	P04050	1733 aa	Known RBP	7.51	□□□□□ -1.21
DOA1	YKL213C	DRS2	P39524	1355 aa		7.5	□□□□□ -1.21
DOA1	YKL213C	MMS1	Q06211	1407 aa		7.5	□□□□□ -1.21
DOA1	YKL213C	TAF7	Q05021	590 aa		7.49	□□□□□ -1.21
DOA1	YKL213C	ABP1	P15891	592 aa	Known RBP	7.48	□□□□□ -1.21
DOA1	YKL213C	SNQ2	P32568	1501 aa	Known RBP	7.46	□□□□□ -1.22
DOA1	YKL213C	SNT2	P53127	1403 aa		7.45	□□□□□ -1.22
DOA1	YKL213C	STH1	P32597	1359 aa		7.42	□□□□□ -1.22
DOA1	YKL213C	MET10	P39692	1035 aa		7.41	□□□□□ -1.22
DOA1	YKL213C	SAS10	Q12136	610 aa	Predicted RBP	7.41	□□□□□ -1.22
DOA1	YKL213C	NUP170	P38181	1502 aa		7.39	□□□□□ -1.23
DOA1	YKL213C	RTT106	P40161	455 aa		7.38	□□□□□ -1.23
DOA1	YKL213C	MLP2	P40457	1679 aa		7.38	□□□□□ -1.23
DOA1	YKL213C	SPO14	P36126	1683 aa		7.37	□□□□□ -1.23
DOA1	YKL213C	IRC20	Q06554	1556 aa		7.37	□□□□□ -1.23
DOA1	YKL213C	ULS1	Q08562	1619 aa		7.37	□□□□□ -1.23
DOA1	YKL213C	PDR15	Q04182	1529 aa	Known RBP	7.36	□□□□□ -1.23
DOA1	YKL213C	DNF2	Q12675	1612 aa		7.35	□□□□□ -1.23
DOA1	YKL213C	PDR12	Q02785	1511 aa		7.34	□□□□□ -1.23
DOA1	YKL213C	YFR006W	P43590	535 aa		7.33	□□□□□ -1.24
DOA1	YKL213C	GDB1	Q06625	1536 aa		7.3	□□□□□ -1.24
DOA1	YKL213C	NUP157	P40064	1391 aa	Known RBP	7.3	□□□□□ -1.24
DOA1	YKL213C	DOP1	Q03921	1698 aa		7.29	□□□□□ -1.24
DOA1	YKL213C	IQG1	Q12280	1495 aa		7.29	□□□□□ -1.24
DOA1	YKL213C	PDR10	P51533	1564 aa		7.27	□□□□□ -1.25
DOA1	YKL213C	IFH1	P39520	1085 aa		7.27	□□□□□ -1.25
DOA1	YKL213C	GEA1	P47102	1408 aa	Predicted RBP	7.26	□□□□□ -1.25
DOA1	YKL213C	TRM3	Q07527	1436 aa		7.26	□□□□□ -1.25
DOA1	YKL213C	BUD3	P25558	1636 aa		7.23	□□□□□ -1.25
DOA1	YKL213C	TY3B-G	Q99315	1547 aa		7.22	□□□□□ -1.25
DOA1	YKL213C	CAT8	P39113	1433 aa		7.2	□□□□□ -1.26
DOA1	YKL213C	TFA1	P36100	482 aa		7.19	□□□□□ -1.26
DOA1	YKL213C	YBT1	P32386	1661 aa		7.18	□□□□□ -1.26
DOA1	YKL213C	YOR093C	Q12275	1648 aa		7.18	□□□□□ -1.26
DOA1	YKL213C	ARO1	P08566	1588 aa	Known RBP	7.17	□□□□□ -1.26
DOA1	YKL213C	CHC1	P22137	1653 aa	Known RBP	7.16	□□□□□ -1.26
DOA1	YKL213C	CKB1	P43639	278 aa		7.11	□□□□□ -1.27
DOA1	YKL213C	IKI3	Q06706	1349 aa	Known RBP	7.1	□□□□□ -1.27
DOA1	YKL213C	SEC7	P11075	2009 aa	Known RBP	7.09	□□□□□ -1.27
DOA1	YKL213C	YSP2	Q06681	1438 aa		7.09	□□□□□ -1.27
DOA1	YKL213C	DNF3	Q12674	1656 aa		7.08	□□□□□ -1.28
DOA1	YKL213C	BNR1	P40450	1375 aa		7.08	□□□□□ -1.28
DOA1	YKL213C	YAP3	P38749	330 aa		7.07	□□□□□ -1.28
DOA1	YKL213C	SRB8	P25648	1427 aa		7.06	□□□□□ -1.28
DOA1	YKL213C	URN1	Q06525	465 aa	Known RBP	7.04	□□□□□ -1.28
DOA1	YKL213C	SSM4	P40318	1319 aa		7.02	□□□□□ -1.29
DOA1	YKL213C	MAK10	Q02197	733 aa		7	□□□□□ -1.29
DOA1	YKL213C	BUD21	Q08492	214 aa	Predicted RBP	6.97	□□□□□ -1.29
DOA1	YKL213C	IPL1	P38991	367 aa		6.92	□□□□□ -1.3
DOA1	YKL213C	USO1	P25386	1790 aa		6.91	□□□□□ -1.3
DOA1	YKL213C	NUP188	P52593	1655 aa	Known RBP	6.89	□□□□□ -1.31
DOA1	YKL213C	GCN2	P15442	1659 aa		6.88	□□□□□ -1.31
DOA1	YKL213C	IML1	P47170	1584 aa		6.88	□□□□□ -1.31
DOA1	YKL213C	TYS1	P36421	394 aa	Known RBP	6.88	□□□□□ -1.31
DOA1	YKL213C	VMR1	P38735	1592 aa		6.87	□□□□□ -1.31
DOA1	YKL213C	HAP1	P0CE41	1502 aa		6.86	□□□□□ -1.31
DOA1	YKL213C	PDR5	P33302	1511 aa	Known RBP	6.85	□□□□□ -1.31
DOA1	YKL213C	YMR196W	Q04336	1088 aa		6.85	□□□□□ -1.31
DOA1	YKL213C	THI12	P42883	340 aa		6.83	□□□□□ -1.32
DOA1	YKL213C	THI5	P43534	340 aa		6.83	□□□□□ -1.32
DOA1	YKL213C	THI11	P47183	340 aa		6.83	□□□□□ -1.32
DOA1	YKL213C	THI13	Q07748	340 aa		6.83	□□□□□ -1.32
DOA1	YKL213C	TY1B-NL2	Q99337	1749 aa	Known RBP	6.83	□□□□□ -1.32
DOA1	YKL213C	PDR11	P40550	1411 aa		6.79	□□□□□ -1.32
DOA1	YKL213C	PAF1	P38351	445 aa		6.77	□□□□□ -1.33
DOA1	YKL213C	RAV1	P47104	1357 aa		6.75	□□□□□ -1.33
DOA1	YKL213C	NOP7	P53261	605 aa	Known RBP	6.74	□□□□□ -1.33
DOA1	YKL213C	RTC1	Q08281	1341 aa		6.71	□□□□□ -1.33
DOA1	YKL213C	KRE5	P22023	1365 aa		6.71	□□□□□ -1.34
DOA1	YKL213C	RIA1	P53893	1110 aa		6.7	□□□□□ -1.34
DOA1	YKL213C	MRX12	P47084	519 aa		6.7	□□□□□ -1.34
DOA1	YKL213C	CFT1	Q06632	1357 aa	Known RBP	6.68	□□□□□ -1.34
DOA1	YKL213C	SIS2	P36024	562 aa		6.67	□□□□□ -1.34
DOA1	YKL213C	YAH1	Q12184	172 aa	Known RBP	6.67	□□□□□ -1.34
DOA1	YKL213C	NUP192	P47054	1683 aa		6.67	□□□□□ -1.34
DOA1	YKL213C	YNR029C	P53729	429 aa	Known RBP	6.66	□□□□□ -1.34
DOA1	YKL213C	BCK1	Q01389	1478 aa		6.65	□□□□□ -1.34
DOA1	YKL213C	PTP3	P40048	928 aa		6.64	□□□□□ -1.35
DOA1	YKL213C	APP1	P53933	587 aa		6.64	□□□□□ -1.35
DOA1	YKL213C	RAD9	P14737	1309 aa		6.63	□□□□□ -1.35
DOA1	YKL213C	ALD4	P46367	519 aa	Known RBP	6.62	□□□□□ -1.35
DOA1	YKL213C	CAB1	Q04430	367 aa		6.62	□□□□□ -1.35
DOA1	YKL213C	GLN1	P32288	370 aa	Known RBP	6.62	□□□□□ -1.35
DOA1	YKL213C	EBP2	P36049	427 aa	Known RBP	6.61	□□□□□ -1.35
DOA1	YKL213C	ESL2	P36168	1195 aa		6.61	□□□□□ -1.35
DOA1	YKL213C	TAF5	P38129	798 aa		6.61	□□□□□ -1.35
DOA1	YKL213C	YIL055C	P40523	627 aa	Known RBP	6.6	□□□□□ -1.35
DOA1	YKL213C	YRB30	P53107	440 aa	Predicted RBP	6.6	□□□□□ -1.35
DOA1	YKL213C	CAB3	P36076	571 aa		6.58	□□□□□ -1.36
DOA1	YKL213C	TY3B-I	Q7LHG5	1498 aa	Known RBP	6.57	□□□□□ -1.36
DOA1	YKL213C	REB1	P21538	810 aa		6.57	□□□□□ -1.36
DOA1	YKL213C	TAF8	Q03750	510 aa		6.56	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 57.3 ms