RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W VTH2P40890 1549 aa7.29□□□□□ -1.24
SSH4YKL124W YCK3P39962 524 aa7.29□□□□□ -1.24
SSH4YKL124W TSC11P40061 1430 aa7.29□□□□□ -1.24
SSH4YKL124W GEA2P39993 1459 aaKnown RBP7.28□□□□□ -1.24
SSH4YKL124W DIP2Q12220 943 aaPredicted RBP7.28□□□□□ -1.24
SSH4YKL124W MYO4P32492 1471 aa7.28□□□□□ -1.24
SSH4YKL124W NUP159P40477 1460 aa7.27□□□□□ -1.25
SSH4YKL124W RPG1P38249 964 aaKnown RBP7.27□□□□□ -1.25
SSH4YKL124W RPO21P04050 1733 aaKnown RBP7.26□□□□□ -1.25
SSH4YKL124W BNI1P41832 1953 aa7.25□□□□□ -1.25
SSH4YKL124W YRF1-1P0CX20 1796 aa7.25□□□□□ -1.25
SSH4YKL124W YRF1-5P0CX21 1796 aa7.25□□□□□ -1.25
SSH4YKL124W YRF1-8P0CX22 1796 aa7.25□□□□□ -1.25
SSH4YKL124W YTA7P40340 1379 aa7.24□□□□□ -1.25
SSH4YKL124W VPS15P22219 1454 aa7.23□□□□□ -1.25
SSH4YKL124W SNQ2P32568 1501 aaKnown RBP7.2□□□□□ -1.26
SSH4YKL124W SNT2P53127 1403 aa7.18□□□□□ -1.26
SSH4YKL124W DRS2P39524 1355 aa7.16□□□□□ -1.26
SSH4YKL124W STH1P32597 1359 aa7.14□□□□□ -1.27
SSH4YKL124W ITT1Q04638 464 aa7.14□□□□□ -1.27
SSH4YKL124W MLP2P40457 1679 aa7.13□□□□□ -1.27
SSH4YKL124W PDR12Q02785 1511 aa7.12□□□□□ -1.27
SSH4YKL124W MMS1Q06211 1407 aa7.12□□□□□ -1.27
SSH4YKL124W NUP170P38181 1502 aa7.11□□□□□ -1.27
SSH4YKL124W SPO14P36126 1683 aa7.11□□□□□ -1.27
SSH4YKL124W MIF2P35201 549 aa7.1□□□□□ -1.27
SSH4YKL124W TFA1P36100 482 aa7.1□□□□□ -1.27
SSH4YKL124W ULS1Q08562 1619 aa7.09□□□□□ -1.27
SSH4YKL124W IRC20Q06554 1556 aa7.08□□□□□ -1.28
SSH4YKL124W MET10P39692 1035 aa7.06□□□□□ -1.28
SSH4YKL124W TSR3Q12094 313 aaKnown RBP7.06□□□□□ -1.28
SSH4YKL124W GDB1Q06625 1536 aa7.06□□□□□ -1.28
SSH4YKL124W DNF2Q12675 1612 aa7.05□□□□□ -1.28
SSH4YKL124W PDR15Q04182 1529 aaKnown RBP7.04□□□□□ -1.28
SSH4YKL124W TRM3Q07527 1436 aa7.04□□□□□ -1.28
SSH4YKL124W TAF7Q05021 590 aa7.02□□□□□ -1.29
SSH4YKL124W DOP1Q03921 1698 aa7.02□□□□□ -1.29
SSH4YKL124W IQG1Q12280 1495 aa7.02□□□□□ -1.29
SSH4YKL124W BUD3P25558 1636 aa7.01□□□□□ -1.29
SSH4YKL124W RTT106P40161 455 aa7.01□□□□□ -1.29
SSH4YKL124W ABP1P15891 592 aaKnown RBP6.99□□□□□ -1.29
SSH4YKL124W AVT3P36062 692 aa6.98□□□□□ -1.29
SSH4YKL124W NUP157P40064 1391 aaKnown RBP6.98□□□□□ -1.29
SSH4YKL124W PDR10P51533 1564 aa6.98□□□□□ -1.29
SSH4YKL124W BFR2Q06631 534 aaKnown RBP6.96□□□□□ -1.29
SSH4YKL124W CHC1P22137 1653 aaKnown RBP6.94□□□□□ -1.3
SSH4YKL124W CAT8P39113 1433 aa6.93□□□□□ -1.3
SSH4YKL124W ARO1P08566 1588 aaKnown RBP6.91□□□□□ -1.3
SSH4YKL124W SAS10Q12136 610 aaPredicted RBP6.91□□□□□ -1.3
SSH4YKL124W GEA1P47102 1408 aaPredicted RBP6.9□□□□□ -1.3
SSH4YKL124W YBT1P32386 1661 aa6.9□□□□□ -1.3
SSH4YKL124W TY3B-GQ99315 1547 aa6.9□□□□□ -1.31
SSH4YKL124W YOR093CQ12275 1648 aa6.89□□□□□ -1.31
SSH4YKL124W SEC7P11075 2009 aaKnown RBP6.84□□□□□ -1.31
SSH4YKL124W YFR006WP43590 535 aa6.84□□□□□ -1.31
SSH4YKL124W IFH1P39520 1085 aa6.83□□□□□ -1.32
SSH4YKL124W RPL17AP05740 184 aaKnown RBP6.82□□□□□ -1.32
SSH4YKL124W RPL17BP46990 184 aaKnown RBP6.82□□□□□ -1.32
SSH4YKL124W DNF3Q12674 1656 aa6.82□□□□□ -1.32
SSH4YKL124W YSP2Q06681 1438 aa6.82□□□□□ -1.32
SSH4YKL124W REB1P21538 810 aa6.81□□□□□ -1.32
SSH4YKL124W MRPL32P25348 183 aa6.78□□□□□ -1.32
SSH4YKL124W BNR1P40450 1375 aa6.77□□□□□ -1.33
SSH4YKL124W SRB8P25648 1427 aa6.75□□□□□ -1.33
SSH4YKL124W CKB1P43639 278 aa6.73□□□□□ -1.33
SSH4YKL124W YAP3P38749 330 aa6.72□□□□□ -1.33
SSH4YKL124W HAP1P0CE41 1502 aa6.72□□□□□ -1.33
SSH4YKL124W URN1Q06525 465 aaKnown RBP6.68□□□□□ -1.34
SSH4YKL124W NUP188P52593 1655 aaKnown RBP6.67□□□□□ -1.34
SSH4YKL124W IML1P47170 1584 aa6.64□□□□□ -1.35
SSH4YKL124W MAK10Q02197 733 aa6.63□□□□□ -1.35
SSH4YKL124W YGL015CP33199 130 aa6.62□□□□□ -1.35
SSH4YKL124W VMR1P38735 1592 aa6.62□□□□□ -1.35
SSH4YKL124W BUD21Q08492 214 aaPredicted RBP6.61□□□□□ -1.35
SSH4YKL124W IKI3Q06706 1349 aaKnown RBP6.6□□□□□ -1.35
SSH4YKL124W TY1B-NL2Q99337 1749 aaKnown RBP6.6□□□□□ -1.35
SSH4YKL124W BUD31P25337 157 aaPredicted RBP6.59□□□□□ -1.35
SSH4YKL124W USO1P25386 1790 aa6.59□□□□□ -1.35
SSH4YKL124W IPL1P38991 367 aa6.59□□□□□ -1.36
SSH4YKL124W PDR5P33302 1511 aaKnown RBP6.58□□□□□ -1.36
SSH4YKL124W GCN2P15442 1659 aa6.55□□□□□ -1.36
SSH4YKL124W YMR196WQ04336 1088 aa6.52□□□□□ -1.37
SSH4YKL124W TYS1P36421 394 aaKnown RBP6.51□□□□□ -1.37
SSH4YKL124W SSM4P40318 1319 aa6.51□□□□□ -1.37
SSH4YKL124W PDR11P40550 1411 aa6.46□□□□□ -1.38
SSH4YKL124W SPT21P35209 758 aa6.45□□□□□ -1.38
SSH4YKL124W THI12P42883 340 aa6.45□□□□□ -1.38
SSH4YKL124W THI5P43534 340 aa6.45□□□□□ -1.38
SSH4YKL124W THI11P47183 340 aa6.45□□□□□ -1.38
SSH4YKL124W THI13Q07748 340 aa6.45□□□□□ -1.38
SSH4YKL124W CFT1Q06632 1357 aaKnown RBP6.43□□□□□ -1.38
SSH4YKL124W CDC27P38042 758 aa6.42□□□□□ -1.38
SSH4YKL124W RAV1P47104 1357 aa6.42□□□□□ -1.38
SSH4YKL124W BCK1Q01389 1478 aa6.41□□□□□ -1.38
SSH4YKL124W NUP192P47054 1683 aa6.41□□□□□ -1.38
SSH4YKL124W YKR023WP36119 530 aaKnown RBP6.39□□□□□ -1.39
SSH4YKL124W KRE5P22023 1365 aa6.37□□□□□ -1.39
SSH4YKL124W PAF1P38351 445 aa6.36□□□□□ -1.39
SSH4YKL124W MRX12P47084 519 aa6.36□□□□□ -1.39
SSH4YKL124W RTC1Q08281 1341 aa6.35□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 39.2 ms