RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeastyeast

Gene VPS60, Length 690 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS60YDR486C SNT2P53127 1403 aa16.48■□□□□ 0.23
VPS60YDR486C MLP2P40457 1679 aa16.46■□□□□ 0.23
VPS60YDR486C NUP159P40477 1460 aa16.46■□□□□ 0.23
VPS60YDR486C RPO21P04050 1733 aaKnown RBP16.45■□□□□ 0.22
VPS60YDR486C ULS1Q08562 1619 aa16.44■□□□□ 0.22
VPS60YDR486C TAF7Q05021 590 aa16.43■□□□□ 0.22
VPS60YDR486C PDR15Q04182 1529 aaKnown RBP16.43■□□□□ 0.22
VPS60YDR486C YRF1-1P0CX20 1796 aa16.34■□□□□ 0.21
VPS60YDR486C YRF1-5P0CX21 1796 aa16.34■□□□□ 0.21
VPS60YDR486C YRF1-8P0CX22 1796 aa16.34■□□□□ 0.21
VPS60YDR486C GEA2P39993 1459 aaKnown RBP16.29■□□□□ 0.2
VPS60YDR486C RTT106P40161 455 aa16.28■□□□□ 0.2
VPS60YDR486C IFH1P39520 1085 aa16.27■□□□□ 0.2
VPS60YDR486C GEA1P47102 1408 aaPredicted RBP16.26■□□□□ 0.19
VPS60YDR486C VPS15P22219 1454 aa16.25■□□□□ 0.19
VPS60YDR486C IRC20Q06554 1556 aa16.21■□□□□ 0.19
VPS60YDR486C LTE1P07866 1435 aa16.21■□□□□ 0.19
VPS60YDR486C MET10P39692 1035 aa16.18■□□□□ 0.18
VPS60YDR486C PDR12Q02785 1511 aa16.17■□□□□ 0.18
VPS60YDR486C SPO14P36126 1683 aa16.14■□□□□ 0.18
VPS60YDR486C TY3B-GQ99315 1547 aa16.14■□□□□ 0.17
VPS60YDR486C GDB1Q06625 1536 aa16.09■□□□□ 0.17
VPS60YDR486C NUP157P40064 1391 aaKnown RBP16.05■□□□□ 0.16
VPS60YDR486C YBT1P32386 1661 aa16.05■□□□□ 0.16
VPS60YDR486C CAT8P39113 1433 aa16.04■□□□□ 0.16
VPS60YDR486C PDR10P51533 1564 aa16.03■□□□□ 0.16
VPS60YDR486C BNI1P41832 1953 aa15.96■□□□□ 0.15
VPS60YDR486C IKI3Q06706 1349 aaKnown RBP15.95■□□□□ 0.14
VPS60YDR486C NUP170P38181 1502 aa15.95■□□□□ 0.14
VPS60YDR486C DRS2P39524 1355 aa15.95■□□□□ 0.14
VPS60YDR486C IQG1Q12280 1495 aa15.94■□□□□ 0.14
VPS60YDR486C ITT1Q04638 464 aa15.92■□□□□ 0.14
VPS60YDR486C ARO1P08566 1588 aaKnown RBP15.91■□□□□ 0.14
VPS60YDR486C BUD3P25558 1636 aa15.85■□□□□ 0.13
VPS60YDR486C CKB1P43639 278 aa15.84■□□□□ 0.13
VPS60YDR486C YSP2Q06681 1438 aa15.79■□□□□ 0.12
VPS60YDR486C SSM4P40318 1319 aa15.79■□□□□ 0.12
VPS60YDR486C SRB8P25648 1427 aa15.77■□□□□ 0.12
VPS60YDR486C TRM3Q07527 1436 aa15.77■□□□□ 0.11
VPS60YDR486C DOP1Q03921 1698 aa15.76■□□□□ 0.11
VPS60YDR486C MMS1Q06211 1407 aa15.74■□□□□ 0.11
VPS60YDR486C SEC7P11075 2009 aaKnown RBP15.66■□□□□ 0.1
VPS60YDR486C BNR1P40450 1375 aa15.64■□□□□ 0.09
VPS60YDR486C CHC1P22137 1653 aaKnown RBP15.64■□□□□ 0.09
VPS60YDR486C BUD21Q08492 214 aaPredicted RBP15.57■□□□□ 0.08
VPS60YDR486C DNF2Q12675 1612 aa15.56■□□□□ 0.08
VPS60YDR486C GCN2P15442 1659 aa15.41■□□□□ 0.06
VPS60YDR486C ABP1P15891 592 aaKnown RBP15.39■□□□□ 0.05
VPS60YDR486C YOR093CQ12275 1648 aa15.39■□□□□ 0.05
VPS60YDR486C VMR1P38735 1592 aa15.32■□□□□ 0.04
VPS60YDR486C NUP188P52593 1655 aaKnown RBP15.32■□□□□ 0.04
VPS60YDR486C PDR5P33302 1511 aaKnown RBP15.29■□□□□ 0.04
VPS60YDR486C YAP3P38749 330 aa15.28■□□□□ 0.04
VPS60YDR486C URN1Q06525 465 aaKnown RBP15.25■□□□□ 0.03
VPS60YDR486C IML1P47170 1584 aa15.23■□□□□ 0.03
VPS60YDR486C PDR11P40550 1411 aa15.2■□□□□ 0.02
VPS60YDR486C DNF3Q12674 1656 aa15.2■□□□□ 0.02
VPS60YDR486C IPL1P38991 367 aa15.2■□□□□ 0.02
VPS60YDR486C TYS1P36421 394 aaKnown RBP15.17■□□□□ 0.02
VPS60YDR486C PAF1P38351 445 aa15.13■□□□□ 0.01
VPS60YDR486C MIF2P35201 549 aa15.1■□□□□ 0.01
VPS60YDR486C NOP7P53261 605 aaKnown RBP15.1■□□□□ 0.01
VPS60YDR486C RAV1P47104 1357 aa15.1■□□□□ 0.01
VPS60YDR486C BFR2Q06631 534 aaKnown RBP15.08■□□□□ 0
VPS60YDR486C HAP1P0CE41 1502 aa15.07■□□□□ 0
VPS60YDR486C RTC1Q08281 1341 aa15.01□□□□□ -0.01
VPS60YDR486C MAK10Q02197 733 aa15.01□□□□□ -0.01
VPS60YDR486C NUP192P47054 1683 aa14.93□□□□□ -0.02
VPS60YDR486C BCK1Q01389 1478 aa14.83□□□□□ -0.03
VPS60YDR486C TAF5P38129 798 aa14.82□□□□□ -0.04
VPS60YDR486C RAD9P14737 1309 aa14.81□□□□□ -0.04
VPS60YDR486C ESL2P36168 1195 aa14.8□□□□□ -0.04
VPS60YDR486C ALD4P46367 519 aaKnown RBP14.8□□□□□ -0.04
VPS60YDR486C USO1P25386 1790 aa14.8□□□□□ -0.04
VPS60YDR486C KRE5P22023 1365 aa14.79□□□□□ -0.04
VPS60YDR486C CAB1Q04430 367 aa14.77□□□□□ -0.05
VPS60YDR486C TY3B-IQ7LHG5 1498 aaKnown RBP14.76□□□□□ -0.05
VPS60YDR486C TY1B-NL2Q99337 1749 aaKnown RBP14.75□□□□□ -0.05
VPS60YDR486C MRX12P47084 519 aa14.75□□□□□ -0.05
VPS60YDR486C CFT1Q06632 1357 aaKnown RBP14.74□□□□□ -0.05
VPS60YDR486C RIA1P53893 1110 aa14.72□□□□□ -0.05
VPS60YDR486C POL5P39985 1022 aaKnown RBP14.71□□□□□ -0.05
VPS60YDR486C ORC1P54784 914 aaPredicted RBP14.69□□□□□ -0.06
VPS60YDR486C YFR006WP43590 535 aa14.68□□□□□ -0.06
VPS60YDR486C KIP3P53086 805 aaKnown RBP14.68□□□□□ -0.06
VPS60YDR486C TAF8Q03750 510 aa14.68□□□□□ -0.06
VPS60YDR486C YMR196WQ04336 1088 aa14.66□□□□□ -0.06
VPS60YDR486C YLR419WQ06698 1435 aaKnown RBP14.64□□□□□ -0.07
VPS60YDR486C SPE2P21182 396 aa14.62□□□□□ -0.07
VPS60YDR486C NAP1P25293 417 aaKnown RBP14.61□□□□□ -0.07
VPS60YDR486C YNR029CP53729 429 aaKnown RBP14.61□□□□□ -0.07
VPS60YDR486C THI12P42883 340 aa14.6□□□□□ -0.07
VPS60YDR486C THI5P43534 340 aa14.6□□□□□ -0.07
VPS60YDR486C THI11P47183 340 aa14.6□□□□□ -0.07
VPS60YDR486C THI13Q07748 340 aa14.6□□□□□ -0.07
VPS60YDR486C MHP1P43638 1398 aa14.5□□□□□ -0.09
VPS60YDR486C RCM1P53972 490 aa14.49□□□□□ -0.09
VPS60YDR486C CHZ1P40019 153 aaPredicted RBP14.46□□□□□ -0.09
VPS60YDR486C PPH3P32345 308 aa14.45□□□□□ -0.1
VPS60YDR486C SCT1P32784 759 aa14.45□□□□□ -0.1
Retrieved 100 of 5,963 RNA–protein pairs in 25.9 ms