RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C BCK2P33306 851 aa7.75□□□□□ -1.17
SNU56YDR240C DCW1P36091 449 aa7.75□□□□□ -1.17
SNU56YDR240C PTC4P38089 393 aa7.75□□□□□ -1.17
SNU56YDR240C YEL023CP39992 682 aa7.73□□□□□ -1.17
SNU56YDR240C PRE3P38624 215 aa7.72□□□□□ -1.17
SNU56YDR240C GRE2Q12068 342 aaKnown RBP7.64□□□□□ -1.19
SNU56YDR240C PML39Q03760 334 aa7.57□□□□□ -1.2
SNU56YDR240C MAK11P20484 414 aaKnown RBP7.56□□□□□ -1.2
SNU56YDR240C MIF2P35201 549 aa7.55□□□□□ -1.2
SNU56YDR240C XDJ1P39102 459 aa7.55□□□□□ -1.2
SNU56YDR240C ATH1P48016 1211 aa7.55□□□□□ -1.2
SNU56YDR240C GUT1P32190 709 aa7.55□□□□□ -1.2
SNU56YDR240C VRP1P37370 817 aa7.55□□□□□ -1.2
SNU56YDR240C ELP4Q02884 456 aaKnown RBP7.54□□□□□ -1.2
SNU56YDR240C PTC3P34221 468 aaKnown RBP7.53□□□□□ -1.2
SNU56YDR240C YDR344CQ05510 147 aa7.53□□□□□ -1.2
SNU56YDR240C EDS1P38073 919 aa7.51□□□□□ -1.21
SNU56YDR240C RAM2P29703 316 aa7.5□□□□□ -1.21
SNU56YDR240C ARH1P48360 493 aa7.49□□□□□ -1.21
SNU56YDR240C NST1P53935 1240 aa7.48□□□□□ -1.21
SNU56YDR240C COQ8P27697 501 aa7.44□□□□□ -1.22
SNU56YDR240C MID1P41821 548 aa7.44□□□□□ -1.22
SNU56YDR240C AI4P03878 556 aa7.43□□□□□ -1.22
SNU56YDR240C MPH3P0CE00 602 aa7.42□□□□□ -1.22
SNU56YDR240C SOL3P38858 249 aa7.42□□□□□ -1.22
SNU56YDR240C SPT23P35210 1082 aa7.41□□□□□ -1.22
SNU56YDR240C PEX29Q03370 554 aa7.41□□□□□ -1.22
SNU56YDR240C DPS1P04802 557 aaKnown RBP7.4□□□□□ -1.22
SNU56YDR240C HAP5Q02516 242 aa7.36□□□□□ -1.23
SNU56YDR240C NOP53Q12080 455 aaKnown RBP7.35□□□□□ -1.23
SNU56YDR240C ILV3P39522 585 aaKnown RBP7.34□□□□□ -1.23
SNU56YDR240C BNI4P53858 892 aa7.33□□□□□ -1.24
SNU56YDR240C YGR273CP53329 174 aa7.3□□□□□ -1.24
SNU56YDR240C YML082WQ04533 649 aaKnown RBP7.3□□□□□ -1.24
SNU56YDR240C PTC2P39966 464 aaKnown RBP7.29□□□□□ -1.24
SNU56YDR240C MPC54Q08550 464 aa7.29□□□□□ -1.24
SNU56YDR240C NMA111P53920 997 aa7.23□□□□□ -1.25
SNU56YDR240C SLI15P38283 698 aa7.22□□□□□ -1.25
SNU56YDR240C SRC1Q03707 834 aa7.22□□□□□ -1.25
SNU56YDR240C DPL1Q05567 589 aa7.21□□□□□ -1.26
SNU56YDR240C KEX1P09620 729 aa7.13□□□□□ -1.27
SNU56YDR240C ISU2Q12056 156 aa7.13□□□□□ -1.27
SNU56YDR240C YPR015CQ12531 247 aa7.11□□□□□ -1.27
SNU56YDR240C RAM1P22007 431 aa7.11□□□□□ -1.27
SNU56YDR240C RAS1P01119 309 aa7.09□□□□□ -1.27
SNU56YDR240C SET1P38827 1080 aaKnown RBP7.08□□□□□ -1.28
SNU56YDR240C CDC73Q06697 393 aa7.06□□□□□ -1.28
SNU56YDR240C GYP1Q08484 637 aa7.05□□□□□ -1.28
SNU56YDR240C RGA2Q06407 1009 aa7.04□□□□□ -1.28
SNU56YDR240C IFH1P39520 1085 aa7.04□□□□□ -1.28
SNU56YDR240C YLR326WQ06170 240 aaKnown RBP7.04□□□□□ -1.28
SNU56YDR240C AMS1P22855 1083 aa7.03□□□□□ -1.28
SNU56YDR240C RGA1P39083 1007 aa7.03□□□□□ -1.28
SNU56YDR240C UBP14P38237 781 aaKnown RBP7.02□□□□□ -1.29
SNU56YDR240C SAS4Q04003 481 aa7.01□□□□□ -1.29
SNU56YDR240C RPP1BP10622 106 aaKnown RBP6.99□□□□□ -1.29
SNU56YDR240C PDR1P12383 1068 aa6.99□□□□□ -1.29
SNU56YDR240C TRK1P12685 1235 aa6.99□□□□□ -1.29
SNU56YDR240C VHR2P40041 505 aa6.99□□□□□ -1.29
SNU56YDR240C RAD54P32863 898 aa6.98□□□□□ -1.29
SNU56YDR240C PCS60P38137 543 aaKnown RBP RIP-Chip data6.98□□□□□ -1.29not detected
SNU56YDR240C YPR148CQ06523 435 aa6.96□□□□□ -1.3
SNU56YDR240C SDH2P21801 266 aa6.95□□□□□ -1.3
SNU56YDR240C DMA1P38823 416 aa6.93□□□□□ -1.3
SNU56YDR240C YEL077CQ3E7X8 1277 aa6.93□□□□□ -1.3
SNU56YDR240C MRF1P30775 413 aaPredicted RBP6.91□□□□□ -1.3
SNU56YDR240C RQC2Q12532 1038 aaKnown RBP6.91□□□□□ -1.3
SNU56YDR240C YDR090CQ03193 310 aa6.87□□□□□ -1.31
SNU56YDR240C BUD20Q08004 166 aaPredicted RBP6.87□□□□□ -1.31
SNU56YDR240C PRT1P06103 763 aaKnown RBP6.86□□□□□ -1.31
SNU56YDR240C KIC1P38692 1080 aa6.86□□□□□ -1.31
SNU56YDR240C PEX21P50091 288 aa6.86□□□□□ -1.31
SNU56YDR240C YRR1Q12172 810 aa6.85□□□□□ -1.31
SNU56YDR240C VPS70P47161 811 aa6.84□□□□□ -1.31
SNU56YDR240C GAP1P19145 602 aaPredicted RBP6.83□□□□□ -1.32
SNU56YDR240C REF2P42073 533 aaPredicted RBP6.83□□□□□ -1.32
SNU56YDR240C CSC1Q06538 782 aa6.83□□□□□ -1.32
SNU56YDR240C TFB4Q12004 338 aa6.83□□□□□ -1.32
SNU56YDR240C STR2P47164 639 aa6.82□□□□□ -1.32
SNU56YDR240C SAS10Q12136 610 aaPredicted RBP6.82□□□□□ -1.32
SNU56YDR240C CKB1P43639 278 aa6.81□□□□□ -1.32
SNU56YDR240C ERG12P07277 443 aa6.8□□□□□ -1.32
SNU56YDR240C ISM1P48526 1002 aa6.79□□□□□ -1.32
SNU56YDR240C MAK21Q12176 1025 aaKnown RBP6.79□□□□□ -1.32
SNU56YDR240C NUD1P32336 851 aa6.79□□□□□ -1.32
SNU56YDR240C TUM1Q08686 304 aaKnown RBP6.79□□□□□ -1.32
SNU56YDR240C NPL4P33755 580 aa6.76□□□□□ -1.33
SNU56YDR240C YPL062WQ02781 134 aa6.75□□□□□ -1.33
SNU56YDR240C ORC6P38826 435 aa6.74□□□□□ -1.33
SNU56YDR240C BRE2P43132 505 aa6.74□□□□□ -1.33
SNU56YDR240C CST6P40535 587 aa6.73□□□□□ -1.33
SNU56YDR240C COX6P00427 148 aa6.73□□□□□ -1.33
SNU56YDR240C GCR2Q01722 534 aa6.73□□□□□ -1.33
SNU56YDR240C SPT16P32558 1035 aaKnown RBP6.72□□□□□ -1.33
SNU56YDR240C AIR1P40507 360 aaKnown RBP6.72□□□□□ -1.33
SNU56YDR240C GCD11P32481 527 aaKnown RBP6.71□□□□□ -1.34
SNU56YDR240C TY1A-DR4O74302 440 aa6.7□□□□□ -1.34
SNU56YDR240C TY1A-HP0C2I4 478 aaKnown RBP6.7□□□□□ -1.34
SNU56YDR240C TY1A-AP0CX57 440 aa6.7□□□□□ -1.34
SNU56YDR240C TY1A-PR1P0CX58 440 aa6.7□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms