RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C YEL023CP39992 682 aa4.82□□□□□ -1.64
VPS54YDR027C GRE2Q12068 342 aaKnown RBP4.82□□□□□ -1.64
VPS54YDR027C PTC4P38089 393 aa4.82□□□□□ -1.64
VPS54YDR027C MAK11P20484 414 aaKnown RBP4.81□□□□□ -1.64
VPS54YDR027C YDL129WQ07555 291 aa4.81□□□□□ -1.64
VPS54YDR027C RAM2P29703 316 aa4.8□□□□□ -1.64
VPS54YDR027C ATH1P48016 1211 aa4.79□□□□□ -1.64
VPS54YDR027C PTC3P34221 468 aaKnown RBP4.77□□□□□ -1.65
VPS54YDR027C GUT1P32190 709 aa4.76□□□□□ -1.65
VPS54YDR027C EDS1P38073 919 aa4.76□□□□□ -1.65
VPS54YDR027C CHL1P22516 861 aaPredicted RBP4.75□□□□□ -1.65
VPS54YDR027C COQ8P27697 501 aa4.75□□□□□ -1.65
VPS54YDR027C PRE3P38624 215 aa4.74□□□□□ -1.65
VPS54YDR027C PML39Q03760 334 aa4.73□□□□□ -1.65
VPS54YDR027C BCK2P33306 851 aa4.72□□□□□ -1.65
VPS54YDR027C ELP4Q02884 456 aaKnown RBP4.69□□□□□ -1.66
VPS54YDR027C NOP53Q12080 455 aaKnown RBP4.69□□□□□ -1.66
VPS54YDR027C NST1P53935 1240 aa4.67□□□□□ -1.66
VPS54YDR027C PEX29Q03370 554 aa4.67□□□□□ -1.66
VPS54YDR027C AI4P03878 556 aa4.66□□□□□ -1.66
VPS54YDR027C MPH3P0CE00 602 aa4.66□□□□□ -1.66
VPS54YDR027C SOL3P38858 249 aa4.66□□□□□ -1.66
VPS54YDR027C MID1P41821 548 aa4.66□□□□□ -1.66
VPS54YDR027C ARH1P48360 493 aa4.64□□□□□ -1.67
VPS54YDR027C YDR344CQ05510 147 aa4.64□□□□□ -1.67
VPS54YDR027C VRP1P37370 817 aa4.64□□□□□ -1.67
VPS54YDR027C YGR273CP53329 174 aa4.63□□□□□ -1.67
VPS54YDR027C XDJ1P39102 459 aa4.61□□□□□ -1.67
VPS54YDR027C ILV3P39522 585 aaKnown RBP4.61□□□□□ -1.67
VPS54YDR027C SPT23P35210 1082 aa4.6□□□□□ -1.67
VPS54YDR027C HAP5Q02516 242 aa4.59□□□□□ -1.67
VPS54YDR027C SET1P38827 1080 aaKnown RBP4.57□□□□□ -1.68
VPS54YDR027C MPC54Q08550 464 aa4.57□□□□□ -1.68
VPS54YDR027C BNI4P53858 892 aa4.56□□□□□ -1.68
VPS54YDR027C SLI15P38283 698 aa4.55□□□□□ -1.68
VPS54YDR027C PTC2P39966 464 aaKnown RBP4.55□□□□□ -1.68
VPS54YDR027C NMA111P53920 997 aa4.54□□□□□ -1.68
VPS54YDR027C DPL1Q05567 589 aa4.54□□□□□ -1.68
VPS54YDR027C KEX1P09620 729 aa4.53□□□□□ -1.68
VPS54YDR027C DPS1P04802 557 aaKnown RBP4.52□□□□□ -1.69
VPS54YDR027C YML082WQ04533 649 aaKnown RBP4.52□□□□□ -1.69
VPS54YDR027C VHR2P40041 505 aa4.49□□□□□ -1.69
VPS54YDR027C ISU2Q12056 156 aa4.49□□□□□ -1.69
VPS54YDR027C YLR326WQ06170 240 aaKnown RBP4.49□□□□□ -1.69
VPS54YDR027C IFH1P39520 1085 aa4.48□□□□□ -1.69
VPS54YDR027C RPP1BP10622 106 aaKnown RBP4.48□□□□□ -1.69
VPS54YDR027C RAD54P32863 898 aa4.48□□□□□ -1.69
VPS54YDR027C UBP14P38237 781 aaKnown RBP4.48□□□□□ -1.69
VPS54YDR027C CDC73Q06697 393 aa4.48□□□□□ -1.69
VPS54YDR027C PCS60P38137 543 aaKnown RBP RIP-Chip data4.45□□□□□ -1.7 RIP-Chip
VPS54YDR027C KIC1P38692 1080 aa4.44□□□□□ -1.7
VPS54YDR027C GYP1Q08484 637 aa4.43□□□□□ -1.7
VPS54YDR027C YPR015CQ12531 247 aa4.43□□□□□ -1.7
VPS54YDR027C RAM1P22007 431 aa4.42□□□□□ -1.7
VPS54YDR027C PDR1P12383 1068 aa4.4□□□□□ -1.7
VPS54YDR027C PEX21P50091 288 aa4.4□□□□□ -1.7
VPS54YDR027C REF2P42073 533 aaPredicted RBP4.4□□□□□ -1.71
VPS54YDR027C YDR090CQ03193 310 aa4.39□□□□□ -1.71
VPS54YDR027C YPR148CQ06523 435 aa4.39□□□□□ -1.71
VPS54YDR027C SAS4Q04003 481 aa4.38□□□□□ -1.71
VPS54YDR027C RAS1P01119 309 aa4.37□□□□□ -1.71
VPS54YDR027C VPS70P47161 811 aa4.37□□□□□ -1.71
VPS54YDR027C YRR1Q12172 810 aa4.37□□□□□ -1.71
VPS54YDR027C SRC1Q03707 834 aa4.36□□□□□ -1.71
VPS54YDR027C CSC1Q06538 782 aa4.36□□□□□ -1.71
VPS54YDR027C TFB4Q12004 338 aa4.36□□□□□ -1.71
VPS54YDR027C AMS1P22855 1083 aa4.35□□□□□ -1.71
VPS54YDR027C MAK21Q12176 1025 aaKnown RBP4.34□□□□□ -1.72
VPS54YDR027C TUM1Q08686 304 aaKnown RBP4.33□□□□□ -1.72
VPS54YDR027C YEL077CQ3E7X8 1277 aa4.33□□□□□ -1.72
VPS54YDR027C PRT1P06103 763 aaKnown RBP4.33□□□□□ -1.72
VPS54YDR027C GAP1P19145 602 aaPredicted RBP4.33□□□□□ -1.72
VPS54YDR027C MRF1P30775 413 aaPredicted RBP4.33□□□□□ -1.72
VPS54YDR027C NPL4P33755 580 aa4.32□□□□□ -1.72
VPS54YDR027C ORC6P38826 435 aa4.32□□□□□ -1.72
VPS54YDR027C BUD20Q08004 166 aaPredicted RBP4.32□□□□□ -1.72
VPS54YDR027C COX6P00427 148 aa4.31□□□□□ -1.72
VPS54YDR027C NUD1P32336 851 aa4.31□□□□□ -1.72
VPS54YDR027C TRK1P12685 1235 aa4.3□□□□□ -1.72
VPS54YDR027C STR2P47164 639 aa4.3□□□□□ -1.72
VPS54YDR027C ISM1P48526 1002 aa4.3□□□□□ -1.72
VPS54YDR027C SDH2P21801 266 aa4.29□□□□□ -1.72
VPS54YDR027C ERG12P07277 443 aa4.28□□□□□ -1.72
VPS54YDR027C GCD11P32481 527 aaKnown RBP4.28□□□□□ -1.73
VPS54YDR027C MVP1P40959 511 aaKnown RBP4.28□□□□□ -1.73
VPS54YDR027C CKB1P43639 278 aa4.27□□□□□ -1.73
VPS54YDR027C YPR109WQ06104 294 aa4.26□□□□□ -1.73
VPS54YDR027C SPT16P32558 1035 aaKnown RBP4.26□□□□□ -1.73
VPS54YDR027C RGR1P19263 1082 aa4.25□□□□□ -1.73
VPS54YDR027C PBS2P08018 668 aa4.24□□□□□ -1.73
VPS54YDR027C PAT1P25644 796 aaKnown RBP4.23□□□□□ -1.73
VPS54YDR027C TY1A-DR4O74302 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-HP0C2I4 478 aaKnown RBP4.22□□□□□ -1.73
VPS54YDR027C TY1A-AP0CX57 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-PR1P0CX58 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-ORP0CX59 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-PR2P0CX60 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-DR5P0CX65 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-ER2P0CX66 440 aa4.22□□□□□ -1.73
VPS54YDR027C TY1A-GR3P0CX67 440 aa4.22□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 8.3 ms