RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM6YDL077C VPS29P38759 282 aa1.72□□□□□ -2.13
VAM6YDL077C MGA2P40578 1113 aa1.71□□□□□ -2.13
VAM6YDL077C STS1P38637 319 aa1.71□□□□□ -2.14
VAM6YDL077C ELP4Q02884 456 aaKnown RBP1.71□□□□□ -2.14
VAM6YDL077C PTC4P38089 393 aa1.7□□□□□ -2.14
VAM6YDL077C YEL023CP39992 682 aa1.7□□□□□ -2.14
VAM6YDL077C CST9Q06032 482 aa1.7□□□□□ -2.14
VAM6YDL077C VRP1P37370 817 aa1.69□□□□□ -2.14
VAM6YDL077C XDJ1P39102 459 aa1.69□□□□□ -2.14
VAM6YDL077C DAN4P47179 1161 aa1.69□□□□□ -2.14
VAM6YDL077C PEX29Q03370 554 aa1.68□□□□□ -2.14
VAM6YDL077C GRE2Q12068 342 aaKnown RBP1.68□□□□□ -2.14
VAM6YDL077C DPS1P04802 557 aaKnown RBP1.67□□□□□ -2.14
VAM6YDL077C ATH1P48016 1211 aa1.67□□□□□ -2.14
VAM6YDL077C PML39Q03760 334 aa1.67□□□□□ -2.14
VAM6YDL077C RCR1P38212 213 aa1.66□□□□□ -2.14
VAM6YDL077C GUT1P32190 709 aa1.65□□□□□ -2.15
VAM6YDL077C SPT23P35210 1082 aa1.65□□□□□ -2.15
VAM6YDL077C ARH1P48360 493 aa1.65□□□□□ -2.15
VAM6YDL077C SKI3P17883 1432 aaKnown RBP1.65□□□□□ -2.15
VAM6YDL077C SPA2P23201 1466 aaKnown RBP1.63□□□□□ -2.15
VAM6YDL077C PTC3P34221 468 aaKnown RBP1.63□□□□□ -2.15
VAM6YDL077C PTC2P39966 464 aaKnown RBP1.63□□□□□ -2.15
VAM6YDL077C MID1P41821 548 aa1.63□□□□□ -2.15
VAM6YDL077C HAP5Q02516 242 aa1.63□□□□□ -2.15
VAM6YDL077C MAK11P20484 414 aaKnown RBP1.62□□□□□ -2.15
VAM6YDL077C YDR344CQ05510 147 aa1.62□□□□□ -2.15
VAM6YDL077C BNI4P53858 892 aa1.61□□□□□ -2.15
VAM6YDL077C AI4P03878 556 aa1.6□□□□□ -2.15
VAM6YDL077C MPH3P0CE00 602 aa1.6□□□□□ -2.15
VAM6YDL077C EDS1P38073 919 aa1.6□□□□□ -2.15
VAM6YDL077C COQ8P27697 501 aa1.6□□□□□ -2.15
VAM6YDL077C RQC2Q12532 1038 aaKnown RBP1.6□□□□□ -2.15
VAM6YDL077C YML082WQ04533 649 aaKnown RBP1.59□□□□□ -2.15
VAM6YDL077C GBP2P25555 427 aaKnown RBP RIP-Chip data1.59□□□□□ -2.15not detected
VAM6YDL077C MPC54Q08550 464 aa1.59□□□□□ -2.15
VAM6YDL077C RAM2P29703 316 aa1.59□□□□□ -2.16
VAM6YDL077C GYP1Q08484 637 aa1.59□□□□□ -2.16
VAM6YDL077C TRK1P12685 1235 aa1.58□□□□□ -2.16
VAM6YDL077C NMA111P53920 997 aa1.58□□□□□ -2.16
VAM6YDL077C DPL1Q05567 589 aa1.58□□□□□ -2.16
VAM6YDL077C RPP1BP10622 106 aaKnown RBP1.57□□□□□ -2.16
VAM6YDL077C YGR273CP53329 174 aa1.57□□□□□ -2.16
VAM6YDL077C SRC1Q03707 834 aa1.57□□□□□ -2.16
VAM6YDL077C ILV3P39522 585 aaKnown RBP1.57□□□□□ -2.16
VAM6YDL077C NOP53Q12080 455 aaKnown RBP1.57□□□□□ -2.16
VAM6YDL077C SOL3P38858 249 aa1.57□□□□□ -2.16
VAM6YDL077C ISU2Q12056 156 aa1.57□□□□□ -2.16
VAM6YDL077C YEL077CQ3E7X8 1277 aa1.57□□□□□ -2.16
VAM6YDL077C NST1P53935 1240 aa1.56□□□□□ -2.16
VAM6YDL077C RAS1P01119 309 aa1.56□□□□□ -2.16
VAM6YDL077C AMS1P22855 1083 aa1.56□□□□□ -2.16
VAM6YDL077C CHD1P32657 1468 aa1.56□□□□□ -2.16
VAM6YDL077C SLI15P38283 698 aa1.55□□□□□ -2.16
VAM6YDL077C SAS4Q04003 481 aa1.55□□□□□ -2.16
VAM6YDL077C MRF1P30775 413 aaPredicted RBP1.55□□□□□ -2.16
VAM6YDL077C GCR2Q01722 534 aa1.54□□□□□ -2.16
VAM6YDL077C NOP2P40991 618 aaKnown RBP1.54□□□□□ -2.16
VAM6YDL077C ERG12P07277 443 aa1.53□□□□□ -2.16
VAM6YDL077C KEX1P09620 729 aa1.53□□□□□ -2.16
VAM6YDL077C PEX21P50091 288 aa1.53□□□□□ -2.16
VAM6YDL077C GAR1P28007 205 aaKnown RBP1.53□□□□□ -2.17
VAM6YDL077C RAD54P32863 898 aa1.53□□□□□ -2.17
VAM6YDL077C CDC73Q06697 393 aa1.53□□□□□ -2.17
VAM6YDL077C YPR015CQ12531 247 aa1.53□□□□□ -2.17
VAM6YDL077C INO80P53115 1489 aa1.52□□□□□ -2.17
VAM6YDL077C KIC1P38692 1080 aa1.52□□□□□ -2.17
VAM6YDL077C IFH1P39520 1085 aa1.52□□□□□ -2.17
VAM6YDL077C TCB3Q03640 1545 aaKnown RBP1.52□□□□□ -2.17
VAM6YDL077C BRE2P43132 505 aa1.52□□□□□ -2.17
VAM6YDL077C NPL4P33755 580 aa1.51□□□□□ -2.17
VAM6YDL077C YPL062WQ02781 134 aa1.51□□□□□ -2.17
VAM6YDL077C PDR1P12383 1068 aa1.51□□□□□ -2.17
VAM6YDL077C CAB3P36076 571 aa1.51□□□□□ -2.17
VAM6YDL077C VHR2P40041 505 aa1.51□□□□□ -2.17
VAM6YDL077C PRT1P06103 763 aaKnown RBP1.51□□□□□ -2.17
VAM6YDL077C RAM1P22007 431 aa1.51□□□□□ -2.17
VAM6YDL077C SSN2P38931 1420 aa1.5□□□□□ -2.17
VAM6YDL077C EBP2P36049 427 aaKnown RBP1.5□□□□□ -2.17
VAM6YDL077C TAF7Q05021 590 aa1.5□□□□□ -2.17
VAM6YDL077C YRR1Q12172 810 aa1.5□□□□□ -2.17
VAM6YDL077C YLR326WQ06170 240 aaKnown RBP1.49□□□□□ -2.17
VAM6YDL077C PAT1P25644 796 aaKnown RBP1.49□□□□□ -2.17
VAM6YDL077C SPT16P32558 1035 aaKnown RBP1.49□□□□□ -2.17
VAM6YDL077C SET1P38827 1080 aaKnown RBP1.49□□□□□ -2.17
VAM6YDL077C GCD11P32481 527 aaKnown RBP1.49□□□□□ -2.17
VAM6YDL077C URN1Q06525 465 aaKnown RBP1.49□□□□□ -2.17
VAM6YDL077C CSC1Q06538 782 aa1.49□□□□□ -2.17
VAM6YDL077C UBP14P38237 781 aaKnown RBP1.48□□□□□ -2.17
VAM6YDL077C TFB4Q12004 338 aa1.48□□□□□ -2.17
VAM6YDL077C SDH2P21801 266 aa1.48□□□□□ -2.17
VAM6YDL077C NUD1P32336 851 aa1.48□□□□□ -2.17
VAM6YDL077C PCS60P38137 543 aaKnown RBP RIP-Chip data1.48□□□□□ -2.17 RIP-Chip
VAM6YDL077C FRK1Q03002 865 aaPredicted RBP1.48□□□□□ -2.17
VAM6YDL077C BUD20Q08004 166 aaPredicted RBP1.48□□□□□ -2.17
VAM6YDL077C TUM1Q08686 304 aaKnown RBP1.48□□□□□ -2.17
VAM6YDL077C RLF2Q12495 606 aa1.48□□□□□ -2.17
VAM6YDL077C SGS1P35187 1447 aa1.48□□□□□ -2.17
VAM6YDL077C CDC4P07834 779 aa1.47□□□□□ -2.17
VAM6YDL077C ISM1P48526 1002 aa1.47□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms