RNA–Protein interactions for RNA: YDL003W

MCD1, Transcript of Essential alpha-kleisin subunit of the cohesin complex, yeastyeast

Gene MCD1, Length 1,701 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MCD1YDL003W PTC4P38089 393 aa6.18□□□□□ -1.42
MCD1YDL003W CHL1P22516 861 aaPredicted RBP6.17□□□□□ -1.42
MCD1YDL003W BCK2P33306 851 aa6.17□□□□□ -1.42
MCD1YDL003W YEL023CP39992 682 aa6.16□□□□□ -1.42
MCD1YDL003W PRE3P38624 215 aa6.13□□□□□ -1.43
MCD1YDL003W GRE2Q12068 342 aaKnown RBP6.11□□□□□ -1.43
MCD1YDL003W MIF2P35201 549 aa6.08□□□□□ -1.44
MCD1YDL003W PML39Q03760 334 aa6.07□□□□□ -1.44
MCD1YDL003W ATH1P48016 1211 aa6.06□□□□□ -1.44
MCD1YDL003W ELP4Q02884 456 aaKnown RBP6.06□□□□□ -1.44
MCD1YDL003W VRP1P37370 817 aa6.04□□□□□ -1.44
MCD1YDL003W GUT1P32190 709 aa6.02□□□□□ -1.45
MCD1YDL003W MAK11P20484 414 aaKnown RBP6□□□□□ -1.45
MCD1YDL003W XDJ1P39102 459 aa6□□□□□ -1.45
MCD1YDL003W PTC3P34221 468 aaKnown RBP5.99□□□□□ -1.45
MCD1YDL003W PEX29Q03370 554 aa5.97□□□□□ -1.45
MCD1YDL003W RAM2P29703 316 aa5.96□□□□□ -1.46
MCD1YDL003W EDS1P38073 919 aa5.95□□□□□ -1.46
MCD1YDL003W MID1P41821 548 aa5.95□□□□□ -1.46
MCD1YDL003W YDR344CQ05510 147 aa5.95□□□□□ -1.46
MCD1YDL003W ARH1P48360 493 aa5.94□□□□□ -1.46
MCD1YDL003W COQ8P27697 501 aa5.94□□□□□ -1.46
MCD1YDL003W SPT23P35210 1082 aa5.91□□□□□ -1.46
MCD1YDL003W DPS1P04802 557 aaKnown RBP5.91□□□□□ -1.46
MCD1YDL003W MPH3P0CE00 602 aa5.89□□□□□ -1.47
MCD1YDL003W AI4P03878 556 aa5.88□□□□□ -1.47
MCD1YDL003W SOL3P38858 249 aa5.87□□□□□ -1.47
MCD1YDL003W NST1P53935 1240 aa5.87□□□□□ -1.47
MCD1YDL003W HAP5Q02516 242 aa5.87□□□□□ -1.47
MCD1YDL003W PTC2P39966 464 aaKnown RBP5.84□□□□□ -1.47
MCD1YDL003W NOP53Q12080 455 aaKnown RBP5.82□□□□□ -1.48
MCD1YDL003W YGR273CP53329 174 aa5.81□□□□□ -1.48
MCD1YDL003W BNI4P53858 892 aa5.81□□□□□ -1.48
MCD1YDL003W NMA111P53920 997 aa5.79□□□□□ -1.48
MCD1YDL003W YML082WQ04533 649 aaKnown RBP5.79□□□□□ -1.48
MCD1YDL003W MPC54Q08550 464 aa5.79□□□□□ -1.48
MCD1YDL003W ILV3P39522 585 aaKnown RBP5.78□□□□□ -1.48
MCD1YDL003W DPL1Q05567 589 aa5.75□□□□□ -1.49
MCD1YDL003W SLI15P38283 698 aa5.74□□□□□ -1.49
MCD1YDL003W ISU2Q12056 156 aa5.69□□□□□ -1.5
MCD1YDL003W GYP1Q08484 637 aa5.68□□□□□ -1.5
MCD1YDL003W KEX1P09620 729 aa5.67□□□□□ -1.5
MCD1YDL003W SRC1Q03707 834 aa5.65□□□□□ -1.5
MCD1YDL003W RAS1P01119 309 aa5.65□□□□□ -1.51
MCD1YDL003W CDC73Q06697 393 aa5.63□□□□□ -1.51
MCD1YDL003W RPP1BP10622 106 aaKnown RBP5.62□□□□□ -1.51
MCD1YDL003W SET1P38827 1080 aaKnown RBP5.62□□□□□ -1.51
MCD1YDL003W YPR015CQ12531 247 aa5.62□□□□□ -1.51
MCD1YDL003W VHR2P40041 505 aa5.6□□□□□ -1.51
MCD1YDL003W RAM1P22007 431 aa5.6□□□□□ -1.51
MCD1YDL003W SAS4Q04003 481 aa5.59□□□□□ -1.51
MCD1YDL003W PDR1P12383 1068 aa5.58□□□□□ -1.52
MCD1YDL003W AMS1P22855 1083 aa5.58□□□□□ -1.52
MCD1YDL003W RAD54P32863 898 aa5.58□□□□□ -1.52
MCD1YDL003W YLR326WQ06170 240 aaKnown RBP5.58□□□□□ -1.52
MCD1YDL003W UBP14P38237 781 aaKnown RBP5.57□□□□□ -1.52
MCD1YDL003W TRK1P12685 1235 aa5.56□□□□□ -1.52
MCD1YDL003W PCS60P38137 543 aaKnown RBP RIP-Chip data5.56□□□□□ -1.52not detected
MCD1YDL003W PEX21P50091 288 aa5.55□□□□□ -1.52
MCD1YDL003W KIC1P38692 1080 aa5.54□□□□□ -1.52
MCD1YDL003W YEL077CQ3E7X8 1277 aa5.54□□□□□ -1.52
MCD1YDL003W MRF1P30775 413 aaPredicted RBP5.54□□□□□ -1.52
MCD1YDL003W RGA1P39083 1007 aa5.52□□□□□ -1.53
MCD1YDL003W IFH1P39520 1085 aa5.51□□□□□ -1.53
MCD1YDL003W YRR1Q12172 810 aa5.5□□□□□ -1.53
MCD1YDL003W RGA2Q06407 1009 aa5.49□□□□□ -1.53
MCD1YDL003W PRT1P06103 763 aaKnown RBP5.48□□□□□ -1.53
MCD1YDL003W ERG12P07277 443 aa5.47□□□□□ -1.53
MCD1YDL003W SDH2P21801 266 aa5.46□□□□□ -1.54
MCD1YDL003W NPL4P33755 580 aa5.46□□□□□ -1.54
MCD1YDL003W BUD20Q08004 166 aaPredicted RBP5.46□□□□□ -1.54
MCD1YDL003W CSC1Q06538 782 aa5.44□□□□□ -1.54
MCD1YDL003W TUM1Q08686 304 aaKnown RBP5.44□□□□□ -1.54
MCD1YDL003W YDR090CQ03193 310 aa5.43□□□□□ -1.54
MCD1YDL003W TFB4Q12004 338 aa5.43□□□□□ -1.54
MCD1YDL003W REF2P42073 533 aaPredicted RBP5.42□□□□□ -1.54
MCD1YDL003W NUD1P32336 851 aa5.41□□□□□ -1.54
MCD1YDL003W GCD11P32481 527 aaKnown RBP5.41□□□□□ -1.54
MCD1YDL003W SPT16P32558 1035 aaKnown RBP5.41□□□□□ -1.54
MCD1YDL003W ISM1P48526 1002 aa5.41□□□□□ -1.54
MCD1YDL003W GCR2Q01722 534 aa5.41□□□□□ -1.54
MCD1YDL003W GBP2P25555 427 aaKnown RBP RIP-Chip data5.4□□□□□ -1.54 RIP-Chip
MCD1YDL003W STR2P47164 639 aa5.4□□□□□ -1.54
MCD1YDL003W GAP1P19145 602 aaPredicted RBP5.37□□□□□ -1.55
MCD1YDL003W GAR1P28007 205 aaKnown RBP5.37□□□□□ -1.55
MCD1YDL003W PAT1P25644 796 aaKnown RBP5.36□□□□□ -1.55
MCD1YDL003W BRE2P43132 505 aa5.36□□□□□ -1.55
MCD1YDL003W CST6P40535 587 aa5.34□□□□□ -1.56
MCD1YDL003W VPS70P47161 811 aa5.34□□□□□ -1.56
MCD1YDL003W FRK1Q03002 865 aaPredicted RBP5.34□□□□□ -1.56
MCD1YDL003W AIR1P40507 360 aaKnown RBP5.33□□□□□ -1.56
MCD1YDL003W YPL062WQ02781 134 aa5.33□□□□□ -1.56
MCD1YDL003W ORC6P38826 435 aa5.32□□□□□ -1.56
MCD1YDL003W MAK21Q12176 1025 aaKnown RBP5.32□□□□□ -1.56
MCD1YDL003W COX6P00427 148 aa5.31□□□□□ -1.56
MCD1YDL003W MVP1P40959 511 aaKnown RBP5.31□□□□□ -1.56
MCD1YDL003W YPR109WQ06104 294 aa5.31□□□□□ -1.56
MCD1YDL003W YPR148CQ06523 435 aa5.31□□□□□ -1.56
MCD1YDL003W RRN7P40992 514 aa5.31□□□□□ -1.56
MCD1YDL003W CLA4P48562 842 aa5.31□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 10.5 ms