RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W TY1B-NL1Q12112 1755 aa9.96□□□□□ -0.81
SHP1YBL058W TY1B-GR1Q12141 1755 aa9.96□□□□□ -0.81
SHP1YBL058W TY1B-BLQ12490 1755 aa9.96□□□□□ -0.81
SHP1YBL058W NUP159P40477 1460 aa9.96□□□□□ -0.82
SHP1YBL058W YOR1P53049 1477 aa9.96□□□□□ -0.82
SHP1YBL058W ABP1P15891 592 aaKnown RBP9.95□□□□□ -0.82
SHP1YBL058W SPP41P38904 1435 aa9.95□□□□□ -0.82
SHP1YBL058W MMS1Q06211 1407 aa9.95□□□□□ -0.82
SHP1YBL058W STU1P38198 1513 aa9.95□□□□□ -0.82
SHP1YBL058W VPS15P22219 1454 aa9.93□□□□□ -0.82
SHP1YBL058W DRS2P39524 1355 aa9.91□□□□□ -0.82
SHP1YBL058W NTE1Q04958 1679 aa9.91□□□□□ -0.82
SHP1YBL058W VTH1P40438 1549 aa9.88□□□□□ -0.83
SHP1YBL058W VTH2P40890 1549 aa9.88□□□□□ -0.83
SHP1YBL058W RPO21P04050 1733 aaKnown RBP9.88□□□□□ -0.83
SHP1YBL058W YFR006WP43590 535 aa9.88□□□□□ -0.83
SHP1YBL058W TSC11P40061 1430 aa9.88□□□□□ -0.83
SHP1YBL058W IRC20Q06554 1556 aa9.87□□□□□ -0.83
SHP1YBL058W TSR3Q12094 313 aaKnown RBP9.84□□□□□ -0.83
SHP1YBL058W MYO4P32492 1471 aa9.8□□□□□ -0.84
SHP1YBL058W DNF2Q12675 1612 aa9.79□□□□□ -0.84
SHP1YBL058W SNT2P53127 1403 aa9.77□□□□□ -0.85
SHP1YBL058W ISW2Q08773 1120 aa9.77□□□□□ -0.85
SHP1YBL058W RPG1P38249 964 aaKnown RBP9.76□□□□□ -0.85
SHP1YBL058W NUP170P38181 1502 aa9.74□□□□□ -0.85
SHP1YBL058W SNQ2P32568 1501 aaKnown RBP9.73□□□□□ -0.85
SHP1YBL058W SPO14P36126 1683 aa9.71□□□□□ -0.85
SHP1YBL058W MET10P39692 1035 aa9.69□□□□□ -0.86
SHP1YBL058W YTA7P40340 1379 aa9.67□□□□□ -0.86
SHP1YBL058W ULS1Q08562 1619 aa9.67□□□□□ -0.86
SHP1YBL058W STH1P32597 1359 aa9.65□□□□□ -0.86
SHP1YBL058W DIP2Q12220 943 aaPredicted RBP9.65□□□□□ -0.86
SHP1YBL058W PDR12Q02785 1511 aa9.65□□□□□ -0.86
SHP1YBL058W DOP1Q03921 1698 aa9.64□□□□□ -0.87
SHP1YBL058W TRM3Q07527 1436 aa9.59□□□□□ -0.87
SHP1YBL058W MLP2P40457 1679 aa9.59□□□□□ -0.87
SHP1YBL058W YOR093CQ12275 1648 aa9.59□□□□□ -0.87
SHP1YBL058W RTT106P40161 455 aa9.56□□□□□ -0.88
SHP1YBL058W GDB1Q06625 1536 aa9.56□□□□□ -0.88
SHP1YBL058W IQG1Q12280 1495 aa9.55□□□□□ -0.88
SHP1YBL058W BUD3P25558 1636 aa9.55□□□□□ -0.88
SHP1YBL058W PDR10P51533 1564 aa9.54□□□□□ -0.88
SHP1YBL058W NUP157P40064 1391 aaKnown RBP9.52□□□□□ -0.88
SHP1YBL058W TFA1P36100 482 aa9.49□□□□□ -0.89
SHP1YBL058W AVT3P36062 692 aa9.47□□□□□ -0.89
SHP1YBL058W PDR15Q04182 1529 aaKnown RBP9.46□□□□□ -0.9
SHP1YBL058W YGL015CP33199 130 aa9.45□□□□□ -0.9
SHP1YBL058W ARO1P08566 1588 aaKnown RBP9.44□□□□□ -0.9
SHP1YBL058W CHC1P22137 1653 aaKnown RBP9.44□□□□□ -0.9
SHP1YBL058W SEC7P11075 2009 aaKnown RBP9.42□□□□□ -0.9
SHP1YBL058W MRPL32P25348 183 aa9.41□□□□□ -0.9
SHP1YBL058W DNF3Q12674 1656 aa9.38□□□□□ -0.91
SHP1YBL058W SAS10Q12136 610 aaPredicted RBP9.37□□□□□ -0.91
SHP1YBL058W BUD31P25337 157 aaPredicted RBP9.35□□□□□ -0.91
SHP1YBL058W TAF7Q05021 590 aa9.34□□□□□ -0.91
SHP1YBL058W IFH1P39520 1085 aa9.31□□□□□ -0.92
SHP1YBL058W YAP3P38749 330 aa9.29□□□□□ -0.92
SHP1YBL058W CAT8P39113 1433 aa9.29□□□□□ -0.92
SHP1YBL058W TY3B-GQ99315 1547 aa9.26□□□□□ -0.93
SHP1YBL058W YBT1P32386 1661 aa9.25□□□□□ -0.93
SHP1YBL058W GEA1P47102 1408 aaPredicted RBP9.23□□□□□ -0.93
SHP1YBL058W YSP2Q06681 1438 aa9.23□□□□□ -0.93
SHP1YBL058W MAK10Q02197 733 aa9.21□□□□□ -0.94
SHP1YBL058W CKB1P43639 278 aa9.2□□□□□ -0.94
SHP1YBL058W BNR1P40450 1375 aa9.2□□□□□ -0.94
SHP1YBL058W URN1Q06525 465 aaKnown RBP9.19□□□□□ -0.94
SHP1YBL058W USO1P25386 1790 aa9.18□□□□□ -0.94
SHP1YBL058W HAP1P0CE41 1502 aa9.13□□□□□ -0.95
SHP1YBL058W TY1B-NL2Q99337 1749 aaKnown RBP9.09□□□□□ -0.95
SHP1YBL058W YMR196WQ04336 1088 aa9.06□□□□□ -0.96
SHP1YBL058W IML1P47170 1584 aa9.03□□□□□ -0.96
SHP1YBL058W NUP188P52593 1655 aaKnown RBP9.01□□□□□ -0.97
SHP1YBL058W SRB8P25648 1427 aa9.01□□□□□ -0.97
SHP1YBL058W IPL1P38991 367 aa9.01□□□□□ -0.97
SHP1YBL058W THI12P42883 340 aa8.99□□□□□ -0.97
SHP1YBL058W THI5P43534 340 aa8.99□□□□□ -0.97
SHP1YBL058W THI11P47183 340 aa8.99□□□□□ -0.97
SHP1YBL058W THI13Q07748 340 aa8.99□□□□□ -0.97
SHP1YBL058W TYS1P36421 394 aaKnown RBP8.97□□□□□ -0.97
SHP1YBL058W VMR1P38735 1592 aa8.95□□□□□ -0.98
SHP1YBL058W BUD21Q08492 214 aaPredicted RBP8.92□□□□□ -0.98
SHP1YBL058W PDR5P33302 1511 aaKnown RBP8.89□□□□□ -0.99
SHP1YBL058W YAH1Q12184 172 aaKnown RBP8.87□□□□□ -0.99
SHP1YBL058W GLN1P32288 370 aaKnown RBP8.79□□□□□ -1
SHP1YBL058W CDC27P38042 758 aa8.79□□□□□ -1
SHP1YBL058W APP1P53933 587 aa8.77□□□□□ -1.01
SHP1YBL058W KRE5P22023 1365 aa8.75□□□□□ -1.01
SHP1YBL058W PDR11P40550 1411 aa8.75□□□□□ -1.01
SHP1YBL058W PTP3P40048 928 aa8.74□□□□□ -1.01
SHP1YBL058W YIL055CP40523 627 aaKnown RBP8.74□□□□□ -1.01
SHP1YBL058W CFT1Q06632 1357 aaKnown RBP8.73□□□□□ -1.01
SHP1YBL058W RPL17AP05740 184 aaKnown RBP8.73□□□□□ -1.01
SHP1YBL058W RPL17BP46990 184 aaKnown RBP8.73□□□□□ -1.01
SHP1YBL058W RIA1P53893 1110 aa8.71□□□□□ -1.02
SHP1YBL058W REB1P21538 810 aa8.68□□□□□ -1.02
SHP1YBL058W BCK1Q01389 1478 aa8.68□□□□□ -1.02
SHP1YBL058W GCN2P15442 1659 aa8.67□□□□□ -1.02
SHP1YBL058W MRX12P47084 519 aa8.67□□□□□ -1.02
SHP1YBL058W YNR029CP53729 429 aaKnown RBP8.67□□□□□ -1.02
SHP1YBL058W UBP10P53874 792 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 5,963 RNA–protein pairs in 29.1 ms