RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 LMOD2Q6P5Q4 547 aa13.13□□□□□ -0.31
CLTCL1-211ENST00000621271 TMC1Q8TDI8 760 aa13.13□□□□□ -0.31
CLTCL1-211ENST00000621271 SALL2Q9Y467 1007 aaPredicted RBP13.12□□□□□ -0.31
CLTCL1-211ENST00000621271 CFDP1Q9UEE9 299 aaPredicted RBP13.11□□□□□ -0.31
CLTCL1-211ENST00000621271 EIF4G1Q04637 1599 aaKnown RBP13.11□□□□□ -0.31
CLTCL1-211ENST00000621271 RSF1Q96T23 1441 aaPredicted RBP13.11□□□□□ -0.31
CLTCL1-211ENST00000621271 ARXQ96QS3 562 aa13.11□□□□□ -0.31
CLTCL1-211ENST00000621271 DNAJC5BQ9UF47 199 aa13.1□□□□□ -0.31
CLTCL1-211ENST00000621271 RRP7BPQ9NSQ0 103 aa13.1□□□□□ -0.31
CLTCL1-211ENST00000621271 FAM9BQ8IZU0 186 aa13.09□□□□□ -0.31
CLTCL1-211ENST00000621271 UPF2Q9HAU5 1272 aaKnown RBP13.09□□□□□ -0.31
CLTCL1-211ENST00000621271 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.08□□□□□ -0.32
CLTCL1-211ENST00000621271 RGL3Q3MIN7 710 aa13.08□□□□□ -0.32
CLTCL1-211ENST00000621271 ATAD2BQ9ULI0 1458 aa13.07□□□□□ -0.32
CLTCL1-211ENST00000621271 FKBP8Q14318 412 aa13.06□□□□□ -0.32
CLTCL1-211ENST00000621271 MYH16Q9H6N6 1097 aa13.06□□□□□ -0.32
CLTCL1-211ENST00000621271 MLECQ14165 292 aa13.04□□□□□ -0.32
CLTCL1-211ENST00000621271 NPHP1O15259 732 aa13.04□□□□□ -0.32
CLTCL1-211ENST00000621271 ANP32AP39687 249 aaKnown RBP13.04□□□□□ -0.32
CLTCL1-211ENST00000621271 HNRNPUQ00839 825 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLTCL1-211ENST00000621271 DDX10Q13206 875 aaKnown RBP13.03□□□□□ -0.32
CLTCL1-211ENST00000621271 POGKQ9P215 609 aa13.03□□□□□ -0.32
CLTCL1-211ENST00000621271 CLIP1P30622 1438 aa13.03□□□□□ -0.32
CLTCL1-211ENST00000621271 HDGFP51858 240 aaKnown RBP13.02□□□□□ -0.32
CLTCL1-211ENST00000621271 NCAPD3P42695 1498 aa13.02□□□□□ -0.33
CLTCL1-211ENST00000621271 PPM1GO15355 546 aaPredicted RBP13.01□□□□□ -0.33
CLTCL1-211ENST00000621271 CDCA8Q53HL2 280 aa13.01□□□□□ -0.33
CLTCL1-211ENST00000621271 CFAP53Q96M91 514 aa13.01□□□□□ -0.33
CLTCL1-211ENST00000621271 CADPSQ9ULU8 1353 aa13.01□□□□□ -0.33
CLTCL1-211ENST00000621271 KIF27Q86VH2 1401 aa12.99□□□□□ -0.33
CLTCL1-211ENST00000621271 CC2D2AQ9P2K1 1620 aa12.99□□□□□ -0.33
CLTCL1-211ENST00000621271 ANP32BQ92688 251 aaKnown RBP12.98□□□□□ -0.33
CLTCL1-211ENST00000621271 MIER1Q8N108 512 aa12.97□□□□□ -0.33
CLTCL1-211ENST00000621271 EIF4G2P78344 907 aaKnown RBP eCLIP12.97□□□□□ -0.33
CLTCL1-211ENST00000621271 MRS2Q9HD23 443 aa12.97□□□□□ -0.33
CLTCL1-211ENST00000621271 BICRAQ9NZM4 1560 aa12.95□□□□□ -0.34
CLTCL1-211ENST00000621271 CDK11BP21127 795 aaKnown RBP12.95□□□□□ -0.34
CLTCL1-211ENST00000621271 WRNQ14191 1432 aaPredicted RBP eCLIP12.95□□□□□ -0.34
CLTCL1-211ENST00000621271 MROH2BQ7Z745 1585 aa12.94□□□□□ -0.34
CLTCL1-211ENST00000621271 SMARCA4P51532 1647 aa12.94□□□□□ -0.34
CLTCL1-211ENST00000621271 KNSTRNQ9Y448 316 aa12.93□□□□□ -0.34
CLTCL1-211ENST00000621271 KANK1Q14678 1352 aa12.92□□□□□ -0.34
CLTCL1-211ENST00000621271 EEA1Q15075 1411 aa12.92□□□□□ -0.34
CLTCL1-211ENST00000621271 NUDCQ9Y266 331 aa12.89□□□□□ -0.35
CLTCL1-211ENST00000621271 CCNB3Q8WWL7 1395 aa12.88□□□□□ -0.35
CLTCL1-211ENST00000621271 GOLGA3Q08378 1498 aa12.88□□□□□ -0.35
CLTCL1-211ENST00000621271 MAPK8IP3Q9UPT6 1336 aa12.88□□□□□ -0.35
CLTCL1-211ENST00000621271 CCDC136Q96JN2 1154 aa12.88□□□□□ -0.35
CLTCL1-211ENST00000621271 CARD11Q9BXL7 1154 aa12.88□□□□□ -0.35
CLTCL1-211ENST00000621271 CEP164Q9UPV0 1460 aa12.87□□□□□ -0.35
CLTCL1-211ENST00000621271 GGT6Q6P531 493 aa12.87□□□□□ -0.35
CLTCL1-211ENST00000621271 ANP32EQ9BTT0 268 aa12.84□□□□□ -0.35
CLTCL1-211ENST00000621271 HIRIP3Q9BW71 556 aaPredicted RBP12.84□□□□□ -0.35
CLTCL1-211ENST00000621271 LAS1LQ9Y4W2 734 aaKnown RBP12.83□□□□□ -0.35
CLTCL1-211ENST00000621271 CARMIL2Q6F5E8 1435 aa12.82□□□□□ -0.36
CLTCL1-211ENST00000621271 SOX12O15370 315 aa12.81□□□□□ -0.36
CLTCL1-211ENST00000621271 EIF5BO60841 1220 aaKnown RBP12.81□□□□□ -0.36
CLTCL1-211ENST00000621271 GOLGA2Q08379 1002 aa12.81□□□□□ -0.36
CLTCL1-211ENST00000621271 ABCC8Q09428 1581 aa12.8□□□□□ -0.36
CLTCL1-211ENST00000621271 SRPK2P78362 688 aaKnown RBP12.8□□□□□ -0.36
CLTCL1-211ENST00000621271 HMGXB3Q12766 1538 aa12.8□□□□□ -0.36
CLTCL1-211ENST00000621271 TOP2AP11388 1531 aaKnown RBP12.8□□□□□ -0.36
CLTCL1-211ENST00000621271 NEUROD2Q15784 382 aa12.79□□□□□ -0.36
CLTCL1-211ENST00000621271 TNNT2P45379 298 aaPredicted RBP12.79□□□□□ -0.36
CLTCL1-211ENST00000621271 AEBP2Q6ZN18 517 aaPredicted RBP12.79□□□□□ -0.36
CLTCL1-211ENST00000621271 OSCARQ8IYS5 282 aa12.78□□□□□ -0.36
CLTCL1-211ENST00000621271 CARMIL1Q5VZK9 1371 aa12.78□□□□□ -0.36
CLTCL1-211ENST00000621271 CCDC9Q9Y3X0 531 aaKnown RBP12.78□□□□□ -0.36
CLTCL1-211ENST00000621271 NBR1Q14596 966 aa12.78□□□□□ -0.36
CLTCL1-211ENST00000621271 U2SURPO15042 1029 aaKnown RBP12.77□□□□□ -0.36
CLTCL1-211ENST00000621271 FTSJ3Q8IY81 847 aaKnown RBP12.77□□□□□ -0.36
CLTCL1-211ENST00000621271 CUX2O14529 1486 aa12.77□□□□□ -0.36
CLTCL1-211ENST00000621271 PNNQ9H307 717 aaKnown RBP12.77□□□□□ -0.36
CLTCL1-211ENST00000621271 FANCD2Q9BXW9 1451 aa12.77□□□□□ -0.37
CLTCL1-211ENST00000621271 CSB-PGBD3P0DP91 1061 aa12.76□□□□□ -0.37
CLTCL1-211ENST00000621271 CEP162Q5TB80 1403 aa12.76□□□□□ -0.37
CLTCL1-211ENST00000621271 EFCAB2Q5VUJ9 269 aa12.76□□□□□ -0.37
CLTCL1-211ENST00000621271 SAFB2Q14151 953 aaKnown RBP eCLIP12.76□□□□□ -0.371e-12■■■□□ 15
CLTCL1-211ENST00000621271 TULP1O00294 542 aaPredicted RBP12.75□□□□□ -0.37
CLTCL1-211ENST00000621271 PAK3O75914 559 aaPredicted RBP12.75□□□□□ -0.37
CLTCL1-211ENST00000621271 OS9Q13438 667 aaPredicted RBP12.75□□□□□ -0.37
CLTCL1-211ENST00000621271 FHAD1B1AJZ9 1412 aa12.75□□□□□ -0.37
CLTCL1-211ENST00000621271 CASC1Q6TDU7 716 aa12.75□□□□□ -0.37
CLTCL1-211ENST00000621271 CCDC88BA6NC98 1476 aa12.74□□□□□ -0.37
CLTCL1-211ENST00000621271 EID1Q9Y6B2 187 aa12.74□□□□□ -0.37
CLTCL1-211ENST00000621271 STK26Q9P289 416 aa12.73□□□□□ -0.37
CLTCL1-211ENST00000621271 DCAF11Q8TEB1 546 aa12.72□□□□□ -0.37
CLTCL1-211ENST00000621271 NCLP19338 710 aaKnown RBP12.72□□□□□ -0.37
CLTCL1-211ENST00000621271 TMF1P82094 1093 aa12.71□□□□□ -0.37
CLTCL1-211ENST00000621271 SOGA1O94964 1423 aa12.71□□□□□ -0.38
CLTCL1-211ENST00000621271 TMX4Q9H1E5 349 aaPredicted RBP12.71□□□□□ -0.38
CLTCL1-211ENST00000621271 CHMP4BQ9H444 224 aaKnown RBP12.7□□□□□ -0.38
CLTCL1-211ENST00000621271 ZRSR1Q15695 479 aaKnown RBP12.7□□□□□ -0.38
CLTCL1-211ENST00000621271 HDGFL2Q7Z4V5 671 aaPredicted RBP12.69□□□□□ -0.38
CLTCL1-211ENST00000621271 UNC13AQ9UPW8 1703 aa12.69□□□□□ -0.38
CLTCL1-211ENST00000621271 GLIPR1L2Q4G1C9 344 aa12.69□□□□□ -0.38
CLTCL1-211ENST00000621271 RTF1Q92541 710 aaKnown RBP12.69□□□□□ -0.38
CLTCL1-211ENST00000621271 IRX6P78412 446 aaPredicted RBP12.68□□□□□ -0.38
CLTCL1-211ENST00000621271 WIZO95785 1651 aa12.68□□□□□ -0.38
CLTCL1-211ENST00000621271 SUPT16HQ9Y5B9 1047 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms