RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 KIF27Q86VH2 1401 aa9.73□□□□□ -0.85
NEDD9-216ENST00000620854 CADPSQ9ULU8 1353 aa9.72□□□□□ -0.85
NEDD9-216ENST00000620854 CHMP7Q8WUX9 453 aaPredicted RBP9.71□□□□□ -0.86
NEDD9-216ENST00000620854 PDS5BQ9NTI5 1447 aa9.71□□□□□ -0.86
NEDD9-216ENST00000620854 SENP3-EIF4A1A0A087X0R7 540 aa9.7□□□□□ -0.86
NEDD9-216ENST00000620854 ARID3CA6NKF2 412 aa9.7□□□□□ -0.86
NEDD9-216ENST00000620854 ARAP1Q96P48 1450 aa9.7□□□□□ -0.86
NEDD9-216ENST00000620854 CDK11AQ9UQ88 783 aaPredicted RBP9.69□□□□□ -0.86
NEDD9-216ENST00000620854 PPP1R15AO75807 674 aaPredicted RBP9.69□□□□□ -0.86
NEDD9-216ENST00000620854 NCAPD3P42695 1498 aa9.68□□□□□ -0.86
NEDD9-216ENST00000620854 BICRAQ9NZM4 1560 aa9.67□□□□□ -0.86
NEDD9-216ENST00000620854 WDR97A6NE52 1622 aa9.65□□□□□ -0.86
NEDD9-216ENST00000620854 NBR1Q14596 966 aa9.65□□□□□ -0.87
NEDD9-216ENST00000620854 CUX2O14529 1486 aa9.64□□□□□ -0.87
NEDD9-216ENST00000620854 FAM9BQ8IZU0 186 aa9.64□□□□□ -0.87
NEDD9-216ENST00000620854 RRBP1Q9P2E9 1410 aaKnown RBP9.64□□□□□ -0.87
NEDD9-216ENST00000620854 B4GALNT3Q6L9W6 998 aa9.64□□□□□ -0.87
NEDD9-216ENST00000620854 SETD5Q9C0A6 1442 aa9.63□□□□□ -0.87
NEDD9-216ENST00000620854 TONSLQ96HA7 1378 aa9.61□□□□□ -0.87
NEDD9-216ENST00000620854 CCER2I3L3R5 266 aa9.61□□□□□ -0.87
NEDD9-216ENST00000620854 DAXXQ9UER7 740 aaPredicted RBP9.61□□□□□ -0.87
NEDD9-216ENST00000620854 PHLDB1Q86UU1 1377 aa9.6□□□□□ -0.87
NEDD9-216ENST00000620854 MAPKBP1O60336 1514 aa9.59□□□□□ -0.87
NEDD9-216ENST00000620854 CCDC184Q52MB2 194 aa9.59□□□□□ -0.87
NEDD9-216ENST00000620854 CARMIL1Q5VZK9 1371 aa9.59□□□□□ -0.87
NEDD9-216ENST00000620854 CHIC2Q9UKJ5 165 aa9.58□□□□□ -0.88
NEDD9-216ENST00000620854 PRXQ9BXM0 1461 aa9.58□□□□□ -0.88
NEDD9-216ENST00000620854 FANCD2Q9BXW9 1451 aa9.58□□□□□ -0.88
NEDD9-216ENST00000620854 ARHGAP35Q9NRY4 1499 aa9.57□□□□□ -0.88
NEDD9-216ENST00000620854 UNC13AQ9UPW8 1703 aa9.57□□□□□ -0.88
NEDD9-216ENST00000620854 CC2D2AQ9P2K1 1620 aa9.57□□□□□ -0.88
NEDD9-216ENST00000620854 TDRD9Q8NDG6 1382 aaKnown RBP9.57□□□□□ -0.88
NEDD9-216ENST00000620854 DEKP35659 375 aaKnown RBP9.56□□□□□ -0.88
NEDD9-216ENST00000620854 ZNF777Q9ULD5 760 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-216ENST00000620854 NPM1P06748 294 aaKnown RBP eCLIP9.55□□□□□ -0.88
NEDD9-216ENST00000620854 RRP7BPQ9NSQ0 103 aa9.55□□□□□ -0.88
NEDD9-216ENST00000620854 HMGXB3Q12766 1538 aa9.54□□□□□ -0.88
NEDD9-216ENST00000620854 RTL5Q5HYW3 569 aaPredicted RBP9.54□□□□□ -0.88
NEDD9-216ENST00000620854 MRS2Q9HD23 443 aa9.54□□□□□ -0.88
NEDD9-216ENST00000620854 MTUS2Q5JR59 1369 aa9.53□□□□□ -0.88
NEDD9-216ENST00000620854 FOXD1Q16676 465 aa9.53□□□□□ -0.88
NEDD9-216ENST00000620854 ZNF326Q5BKZ1 582 aaKnown RBP9.53□□□□□ -0.88
NEDD9-216ENST00000620854 FANCIQ9NVI1 1328 aa9.53□□□□□ -0.88
NEDD9-216ENST00000620854 HSPA5P11021 654 aaKnown RBP9.52□□□□□ -0.88
NEDD9-216ENST00000620854 PPP4R2Q9NY27 417 aa9.52□□□□□ -0.89
NEDD9-216ENST00000620854 PAK3O75914 559 aaPredicted RBP9.51□□□□□ -0.89
NEDD9-216ENST00000620854 TOP2BQ02880 1626 aa9.51□□□□□ -0.89
NEDD9-216ENST00000620854 TIMELESSQ9UNS1 1208 aa9.5□□□□□ -0.89
NEDD9-216ENST00000620854 WASHC2AQ641Q2 1341 aa9.5□□□□□ -0.89
NEDD9-216ENST00000620854 CFTRP13569 1480 aa9.49□□□□□ -0.89
NEDD9-216ENST00000620854 NPM2Q86SE8 214 aaKnown RBP9.49□□□□□ -0.89
NEDD9-216ENST00000620854 IGF1RP08069 1367 aa9.49□□□□□ -0.89
NEDD9-216ENST00000620854 ERICH3Q5RHP9 1530 aa9.48□□□□□ -0.89
NEDD9-216ENST00000620854 LRRC9Q6ZRR7 1453 aa9.48□□□□□ -0.89
NEDD9-216ENST00000620854 RTN4Q9NQC3 1192 aaKnown RBP9.48□□□□□ -0.89
NEDD9-216ENST00000620854 SLC4A1APQ9BWU0 796 aaKnown RBP9.47□□□□□ -0.89
NEDD9-216ENST00000620854 C11orf95C9JLR9 678 aaPredicted RBP9.47□□□□□ -0.89
NEDD9-216ENST00000620854 EIF4G2P78344 907 aaKnown RBP eCLIP9.47□□□□□ -0.89
NEDD9-216ENST00000620854 SALL2Q9Y467 1007 aaPredicted RBP9.47□□□□□ -0.89
NEDD9-216ENST00000620854 FHOD3Q2V2M9 1422 aa9.47□□□□□ -0.89
NEDD9-216ENST00000620854 NOP58Q9Y2X3 529 aaKnown RBP9.47□□□□□ -0.89
NEDD9-216ENST00000620854 CUX1P39880 1505 aa9.47□□□□□ -0.89
NEDD9-216ENST00000620854 CCDC136Q96JN2 1154 aa9.46□□□□□ -0.9
NEDD9-216ENST00000620854 FGD5Q6ZNL6 1462 aa9.45□□□□□ -0.9
NEDD9-216ENST00000620854 NESP48681 1621 aa9.45□□□□□ -0.9
NEDD9-216ENST00000620854 PLEKHD1A6NEE1 506 aa9.45□□□□□ -0.9
NEDD9-216ENST00000620854 FHAD1B1AJZ9 1412 aa9.44□□□□□ -0.9
NEDD9-216ENST00000620854 PRKRIP1Q9H875 184 aaPredicted RBP9.44□□□□□ -0.9
NEDD9-216ENST00000620854 L3MBTL2Q969R5 705 aa9.43□□□□□ -0.9
NEDD9-216ENST00000620854 DNAJC5BQ9UF47 199 aa9.43□□□□□ -0.9
NEDD9-216ENST00000620854 TIAM1Q13009 1591 aa9.43□□□□□ -0.9
NEDD9-216ENST00000620854 PEG3Q9GZU2 1588 aa9.43□□□□□ -0.9
NEDD9-216ENST00000620854 ANO8Q9HCE9 1232 aaPredicted RBP9.42□□□□□ -0.9
NEDD9-216ENST00000620854 ANP32AP39687 249 aaKnown RBP9.42□□□□□ -0.9
NEDD9-216ENST00000620854 ZBTB47Q9UFB7 747 aaPredicted RBP9.41□□□□□ -0.9
NEDD9-216ENST00000620854 RAD54L2Q9Y4B4 1467 aa9.4□□□□□ -0.9
NEDD9-216ENST00000620854 LAS1LQ9Y4W2 734 aaKnown RBP9.4□□□□□ -0.9
NEDD9-216ENST00000620854 CCDC18Q5T9S5 1454 aa9.4□□□□□ -0.9
NEDD9-216ENST00000620854 TSPY4P0CV99 314 aa9.4□□□□□ -0.9
NEDD9-216ENST00000620854 TSPY10P0CW01 314 aa9.4□□□□□ -0.9
NEDD9-216ENST00000620854 PTPRKQ15262 1439 aa9.4□□□□□ -0.91
NEDD9-216ENST00000620854 AQRO60306 1485 aaKnown RBP eCLIP9.39□□□□□ -0.913e-8■■■□□ 17.6
NEDD9-216ENST00000620854 AKNAQ7Z591 1439 aa9.39□□□□□ -0.91
NEDD9-216ENST00000620854 CARMIL2Q6F5E8 1435 aa9.38□□□□□ -0.91
NEDD9-216ENST00000620854 GAPVD1Q14C86 1478 aa9.38□□□□□ -0.91
NEDD9-216ENST00000620854 IL27Q8NEV9 243 aa9.37□□□□□ -0.91
NEDD9-216ENST00000620854 MPHOSPH9Q99550 1183 aa9.37□□□□□ -0.91
NEDD9-216ENST00000620854 BIVM-ERCC5R4GMW8 1640 aa9.36□□□□□ -0.91
NEDD9-216ENST00000620854 NBPF8Q3BBV2 869 aa9.36□□□□□ -0.91
NEDD9-216ENST00000620854 FGD6Q6ZV73 1430 aa9.36□□□□□ -0.91
NEDD9-216ENST00000620854 ZBED9Q6R2W3 1325 aa9.36□□□□□ -0.91
NEDD9-216ENST00000620854 ERICH6BQ5W0A0 696 aa9.36□□□□□ -0.91
NEDD9-216ENST00000620854 IPO9Q96P70 1041 aaKnown RBP9.36□□□□□ -0.91
NEDD9-216ENST00000620854 CFDP1Q9UEE9 299 aaPredicted RBP9.36□□□□□ -0.91
NEDD9-216ENST00000620854 UACAQ9BZF9 1416 aa9.35□□□□□ -0.91
NEDD9-216ENST00000620854 FMN1Q68DA7 1419 aa9.34□□□□□ -0.91
NEDD9-216ENST00000620854 TMC1Q8TDI8 760 aa9.34□□□□□ -0.91
NEDD9-216ENST00000620854 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.34□□□□□ -0.91
NEDD9-216ENST00000620854 PRKCSHP14314 528 aaPredicted RBP9.34□□□□□ -0.91
NEDD9-216ENST00000620854 MRC2Q9UBG0 1479 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms