RNA–Protein interactions for RNA: ENST00000611625.4

CDH1-212, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 4,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-212ENST00000611625 SUPT16HQ9Y5B9 1047 aaKnown RBP16.85■□□□□ 0.29
CDH1-212ENST00000611625 CCDC136Q96JN2 1154 aa16.83■□□□□ 0.28
CDH1-212ENST00000611625 FHAD1B1AJZ9 1412 aa16.83■□□□□ 0.28
CDH1-212ENST00000611625 CANXP27824 592 aaKnown RBP16.82■□□□□ 0.28
CDH1-212ENST00000611625 CARMIL1Q5VZK9 1371 aa16.81■□□□□ 0.28
CDH1-212ENST00000611625 CUX2O14529 1486 aa16.81■□□□□ 0.28
CDH1-212ENST00000611625 SALL2Q9Y467 1007 aaPredicted RBP16.8■□□□□ 0.28
CDH1-212ENST00000611625 TSPY4P0CV99 314 aa16.78■□□□□ 0.28
CDH1-212ENST00000611625 TSPY10P0CW01 314 aa16.78■□□□□ 0.28
CDH1-212ENST00000611625 SMARCA2P51531 1590 aa16.77■□□□□ 0.28
CDH1-212ENST00000611625 TIMELESSQ9UNS1 1208 aa16.77■□□□□ 0.28
CDH1-212ENST00000611625 RUSC2Q8N2Y8 1516 aa16.77■□□□□ 0.27
CDH1-212ENST00000611625 KDM2AQ9Y2K7 1162 aa16.76■□□□□ 0.27
CDH1-212ENST00000611625 SETD5Q9C0A6 1442 aa16.76■□□□□ 0.27
CDH1-212ENST00000611625 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
CDH1-212ENST00000611625 RAPGEF2Q9Y4G8 1499 aa16.73■□□□□ 0.27
CDH1-212ENST00000611625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.71■□□□□ 0.27
CDH1-212ENST00000611625 RAB3GAP2Q9H2M9 1393 aa16.71■□□□□ 0.27
CDH1-212ENST00000611625 ANP32EQ9BTT0 268 aa16.7■□□□□ 0.26
CDH1-212ENST00000611625 CHMP7Q8WUX9 453 aaPredicted RBP16.69■□□□□ 0.26
CDH1-212ENST00000611625 ZBTB47Q9UFB7 747 aaPredicted RBP16.68■□□□□ 0.26
CDH1-212ENST00000611625 CCER2I3L3R5 266 aa16.67■□□□□ 0.26
CDH1-212ENST00000611625 ARHGAP35Q9NRY4 1499 aa16.66■□□□□ 0.26
CDH1-212ENST00000611625 NBR1Q14596 966 aa16.65■□□□□ 0.26
CDH1-212ENST00000611625 CFDP1Q9UEE9 299 aaPredicted RBP16.64■□□□□ 0.25
CDH1-212ENST00000611625 DHX57Q6P158 1386 aaKnown RBP16.63■□□□□ 0.25
CDH1-212ENST00000611625 ATAD2BQ9ULI0 1458 aa16.63■□□□□ 0.25
CDH1-212ENST00000611625 PLEKHD1A6NEE1 506 aa16.61■□□□□ 0.25
CDH1-212ENST00000611625 WDR43Q15061 677 aaKnown RBP eCLIP16.61■□□□□ 0.25
CDH1-212ENST00000611625 NEFMP07197 916 aa16.61■□□□□ 0.25
CDH1-212ENST00000611625 PPP4R2Q9NY27 417 aa16.6■□□□□ 0.25
CDH1-212ENST00000611625 CHGAP10645 457 aaKnown RBP16.59■□□□□ 0.25
CDH1-212ENST00000611625 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.59■□□□□ 0.25
CDH1-212ENST00000611625 SENP3-EIF4A1A0A087X0R7 540 aa16.57■□□□□ 0.24
CDH1-212ENST00000611625 CARD11Q9BXL7 1154 aa16.56■□□□□ 0.24
CDH1-212ENST00000611625 PPP1R15AO75807 674 aaPredicted RBP16.56■□□□□ 0.24
CDH1-212ENST00000611625 HSPA5P11021 654 aaKnown RBP16.54■□□□□ 0.24
CDH1-212ENST00000611625 RGL3Q3MIN7 710 aa16.54■□□□□ 0.24
CDH1-212ENST00000611625 BCL11AQ9H165 835 aa16.53■□□□□ 0.24
CDH1-212ENST00000611625 FMN1Q68DA7 1419 aa16.52■□□□□ 0.24
CDH1-212ENST00000611625 EIF4G1Q04637 1599 aaKnown RBP16.52■□□□□ 0.24
CDH1-212ENST00000611625 UPF2Q9HAU5 1272 aaKnown RBP16.51■□□□□ 0.23
CDH1-212ENST00000611625 B4GALNT3Q6L9W6 998 aa16.49■□□□□ 0.23
CDH1-212ENST00000611625 FHOD3Q2V2M9 1422 aa16.48■□□□□ 0.23
CDH1-212ENST00000611625 RBM19Q9Y4C8 960 aaKnown RBP16.48■□□□□ 0.23
CDH1-212ENST00000611625 TSHZ2Q9NRE2 1034 aa16.47■□□□□ 0.23
CDH1-212ENST00000611625 CADPSQ9ULU8 1353 aa16.46■□□□□ 0.23
CDH1-212ENST00000611625 TDRD9Q8NDG6 1382 aaKnown RBP16.44■□□□□ 0.22
CDH1-212ENST00000611625 FOXD1Q16676 465 aa16.44■□□□□ 0.22
CDH1-212ENST00000611625 KCNH8Q96L42 1107 aa16.44■□□□□ 0.22
CDH1-212ENST00000611625 MPHOSPH9Q99550 1183 aa16.42■□□□□ 0.22
CDH1-212ENST00000611625 KIF21BO75037 1637 aa16.41■□□□□ 0.22
CDH1-212ENST00000611625 KNSTRNQ9Y448 316 aa16.4■□□□□ 0.22
CDH1-212ENST00000611625 NPM1P06748 294 aaKnown RBP eCLIP16.4■□□□□ 0.22
CDH1-212ENST00000611625 DDRGK1Q96HY6 314 aa16.39■□□□□ 0.21
CDH1-212ENST00000611625 CDCA8Q53HL2 280 aa16.39■□□□□ 0.21
CDH1-212ENST00000611625 ERICH6BQ5W0A0 696 aa16.39■□□□□ 0.21
CDH1-212ENST00000611625 DCAF11Q8TEB1 546 aa16.37■□□□□ 0.21
CDH1-212ENST00000611625 HSP90AA1P07900 732 aaKnown RBP16.37■□□□□ 0.21
CDH1-212ENST00000611625 NOP58Q9Y2X3 529 aaKnown RBP16.37■□□□□ 0.21
CDH1-212ENST00000611625 STAG3Q9UJ98 1225 aa16.36■□□□□ 0.21
CDH1-212ENST00000611625 SLC24A1O60721 1099 aa16.36■□□□□ 0.21
CDH1-212ENST00000611625 PKD2Q13563 968 aa16.36■□□□□ 0.21
CDH1-212ENST00000611625 L3MBTL2Q969R5 705 aa16.35■□□□□ 0.21
CDH1-212ENST00000611625 EIF5BO60841 1220 aaKnown RBP16.33■□□□□ 0.2
CDH1-212ENST00000611625 PDS5BQ9NTI5 1447 aa16.33■□□□□ 0.2
CDH1-212ENST00000611625 CC2D1BQ5T0F9 858 aaKnown RBP16.33■□□□□ 0.2
CDH1-212ENST00000611625 IGF1RP08069 1367 aa16.32■□□□□ 0.2
CDH1-212ENST00000611625 SYNJ1O43426 1573 aa16.3■□□□□ 0.2
CDH1-212ENST00000611625 PPM1GO15355 546 aaPredicted RBP16.28■□□□□ 0.2
CDH1-212ENST00000611625 TMF1P82094 1093 aa16.28■□□□□ 0.2
CDH1-212ENST00000611625 CCDC18Q5T9S5 1454 aa16.27■□□□□ 0.2
CDH1-212ENST00000611625 ESF1Q9H501 851 aaKnown RBP16.27■□□□□ 0.19
CDH1-212ENST00000611625 BECN1Q14457 450 aa16.26■□□□□ 0.19
CDH1-212ENST00000611625 ANP32BQ92688 251 aaKnown RBP16.26■□□□□ 0.19
CDH1-212ENST00000611625 ERCC6Q03468 1493 aa16.26■□□□□ 0.19
CDH1-212ENST00000611625 LAS1LQ9Y4W2 734 aaKnown RBP16.25■□□□□ 0.19
CDH1-212ENST00000611625 ARAP1Q96P48 1450 aa16.25■□□□□ 0.19
CDH1-212ENST00000611625 ERICH3Q5RHP9 1530 aa16.25■□□□□ 0.19
CDH1-212ENST00000611625 PHLDB1Q86UU1 1377 aa16.24■□□□□ 0.19
CDH1-212ENST00000611625 FANCD2Q9BXW9 1451 aa16.24■□□□□ 0.19
CDH1-212ENST00000611625 CFAP53Q96M91 514 aa16.24■□□□□ 0.19
CDH1-212ENST00000611625 NUP155O75694 1391 aa16.24■□□□□ 0.19
CDH1-212ENST00000611625 ARXQ96QS3 562 aa16.24■□□□□ 0.19
CDH1-212ENST00000611625 FGD5Q6ZNL6 1462 aa16.24■□□□□ 0.19
CDH1-212ENST00000611625 ANKRD30AQ9BXX3 1397 aa16.24■□□□□ 0.19
CDH1-212ENST00000611625 RRBP1Q9P2E9 1410 aaKnown RBP16.23■□□□□ 0.19
CDH1-212ENST00000611625 RGS3P49796 1198 aa16.23■□□□□ 0.19
CDH1-212ENST00000611625 KTN1Q86UP2 1357 aaKnown RBP16.22■□□□□ 0.19
CDH1-212ENST00000611625 LRRC9Q6ZRR7 1453 aa16.21■□□□□ 0.19
CDH1-212ENST00000611625 NUDCQ9Y266 331 aa16.21■□□□□ 0.19
CDH1-212ENST00000611625 RALBP1Q15311 655 aa16.21■□□□□ 0.19
CDH1-212ENST00000611625 NEUROD2Q15784 382 aa16.21■□□□□ 0.19
CDH1-212ENST00000611625 CARMIL2Q6F5E8 1435 aa16.21■□□□□ 0.19
CDH1-212ENST00000611625 PRKRIP1Q9H875 184 aaPredicted RBP16.19■□□□□ 0.18
CDH1-212ENST00000611625 FGD6Q6ZV73 1430 aa16.19■□□□□ 0.18
CDH1-212ENST00000611625 ROCK2O75116 1388 aaKnown RBP16.19■□□□□ 0.18
CDH1-212ENST00000611625 NCAPD3P42695 1498 aa16.18■□□□□ 0.18
CDH1-212ENST00000611625 RCAN3Q9UKA8 241 aa16.18■□□□□ 0.18
CDH1-212ENST00000611625 PRXQ9BXM0 1461 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms