RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, human

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD3-215	ENST00000602574	CNKSR2	Q8WXI2	1034 aa		12.16	□□□□□ -0.46
COMMD3-215	ENST00000602574	BCCIP	Q9P287	314 aa	Known RBP eCLIP	12.16	□□□□□ -0.46
COMMD3-215	ENST00000602574	CENPJ	Q9HC77	1338 aa	Predicted RBP	12.16	□□□□□ -0.46
COMMD3-215	ENST00000602574	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.15	□□□□□ -0.46
COMMD3-215	ENST00000602574	CALD1	Q05682	793 aa	Known RBP	12.14	□□□□□ -0.47
COMMD3-215	ENST00000602574	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.13	□□□□□ -0.47
COMMD3-215	ENST00000602574	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.13	□□□□□ -0.47
COMMD3-215	ENST00000602574	LOC105371045	A0A1W2PR82	267 aa		12.12	□□□□□ -0.47
COMMD3-215	ENST00000602574	FKBP8	Q14318	412 aa		12.12	□□□□□ -0.47
COMMD3-215	ENST00000602574	DHX37	Q8IY37	1157 aa	Known RBP	12.11	□□□□□ -0.47
COMMD3-215	ENST00000602574	EHMT2	Q96KQ7	1210 aa		12.1	□□□□□ -0.47
COMMD3-215	ENST00000602574	NBR1	Q14596	966 aa		12.09	□□□□□ -0.47
COMMD3-215	ENST00000602574	PRDM4	Q9UKN5	801 aa		12.09	□□□□□ -0.47
COMMD3-215	ENST00000602574	CHRM1	P11229	460 aa	Predicted RBP	12.08	□□□□□ -0.48
COMMD3-215	ENST00000602574	HSP90B1	P14625	803 aa	Known RBP	12.08	□□□□□ -0.48
COMMD3-215	ENST00000602574	PHF23	Q9BUL5	403 aa	Predicted RBP	12.08	□□□□□ -0.48
COMMD3-215	ENST00000602574	RB1CC1	Q8TDY2	1594 aa		12.08	□□□□□ -0.48
COMMD3-215	ENST00000602574	DCAF8L2	P0C7V8	631 aa		12.07	□□□□□ -0.48
COMMD3-215	ENST00000602574	TEX2	Q8IWB9	1127 aa		12.06	□□□□□ -0.48
COMMD3-215	ENST00000602574	C14orf37	Q86TY3	774 aa		12.05	□□□□□ -0.48
COMMD3-215	ENST00000602574	BCAN	Q96GW7	911 aa		12.05	□□□□□ -0.48
COMMD3-215	ENST00000602574	GTF2E1	P29083	439 aa	Predicted RBP	12.03	□□□□□ -0.48
COMMD3-215	ENST00000602574	BBX	Q8WY36	941 aa	Predicted RBP	12.03	□□□□□ -0.48
COMMD3-215	ENST00000602574	NCL	P19338	710 aa	Known RBP	12.01	□□□□□ -0.49
COMMD3-215	ENST00000602574	CANX	P27824	592 aa	Known RBP	12	□□□□□ -0.49
COMMD3-215	ENST00000602574	HSP90AA1	P07900	732 aa	Known RBP	11.99	□□□□□ -0.49
COMMD3-215	ENST00000602574	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	HAP1	P54257	671 aa	Predicted RBP	11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	TAOK2	Q9UL54	1235 aa		11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	PPM1G	O15355	546 aa	Predicted RBP	11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	CNGB1	Q14028	1251 aa	Predicted RBP	11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	FTSJ3	Q8IY81	847 aa	Known RBP	11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	STAC3	Q96MF2	364 aa		11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	BRPF3	Q9ULD4	1205 aa		11.98	□□□□□ -0.49
COMMD3-215	ENST00000602574	NEFM	P07197	916 aa		11.97	□□□□□ -0.49
COMMD3-215	ENST00000602574	CHMP4B	Q9H444	224 aa	Known RBP	11.97	□□□□□ -0.49
COMMD3-215	ENST00000602574	VGF	O15240	615 aa	Predicted RBP	11.96	□□□□□ -0.49
COMMD3-215	ENST00000602574	PAK3	O75914	559 aa	Predicted RBP	11.96	□□□□□ -0.49
COMMD3-215	ENST00000602574	CDK11B	P21127	795 aa	Known RBP	11.95	□□□□□ -0.5
COMMD3-215	ENST00000602574	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.94	□□□□□ -0.5
COMMD3-215	ENST00000602574	ZFP91	Q96JP5	570 aa	Predicted RBP	11.94	□□□□□ -0.5
COMMD3-215	ENST00000602574	IPO9	Q96P70	1041 aa	Known RBP	11.94	□□□□□ -0.5
COMMD3-215	ENST00000602574	RSF1	Q96T23	1441 aa	Predicted RBP	11.94	□□□□□ -0.5
COMMD3-215	ENST00000602574	PDCL3	Q9H2J4	239 aa		11.9	□□□□□ -0.5
COMMD3-215	ENST00000602574	GSE1	Q14687	1217 aa		11.89	□□□□□ -0.51
COMMD3-215	ENST00000602574	ITGAE	P38570	1179 aa		11.88	□□□□□ -0.51
COMMD3-215	ENST00000602574	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.88	□□□□□ -0.51
COMMD3-215	ENST00000602574	ANP32A	P39687	249 aa	Known RBP	11.87	□□□□□ -0.51
COMMD3-215	ENST00000602574	RNF216	Q9NWF9	866 aa	Predicted RBP	11.87	□□□□□ -0.51
COMMD3-215	ENST00000602574	SECISBP2L	Q93073	1101 aa	Known RBP	11.85	□□□□□ -0.51
COMMD3-215	ENST00000602574	RGS3	P49796	1198 aa		11.83	□□□□□ -0.52
COMMD3-215	ENST00000602574	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.83	□□□□□ -0.52
COMMD3-215	ENST00000602574	ARID3A	Q99856	593 aa		11.81	□□□□□ -0.52
COMMD3-215	ENST00000602574	UTP14C	Q5TAP6	766 aa	Known RBP	11.79	□□□□□ -0.52
COMMD3-215	ENST00000602574	TPM2	P07951	284 aa		11.78	□□□□□ -0.52
COMMD3-215	ENST00000602574	EIF4G1	Q04637	1599 aa	Known RBP	11.78	□□□□□ -0.52
COMMD3-215	ENST00000602574	PPP4R2	Q9NY27	417 aa		11.77	□□□□□ -0.53
COMMD3-215	ENST00000602574	CLCN1	P35523	988 aa		11.76	□□□□□ -0.53
COMMD3-215	ENST00000602574	MAP7D2	Q96T17	732 aa		11.76	□□□□□ -0.53
COMMD3-215	ENST00000602574	EEA1	Q15075	1411 aa		11.76	□□□□□ -0.53
COMMD3-215	ENST00000602574	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
COMMD3-215	ENST00000602574	HMGB1	P09429	215 aa	Known RBP	11.75	□□□□□ -0.53
COMMD3-215	ENST00000602574	ANP32B	Q92688	251 aa	Known RBP	11.75	□□□□□ -0.53
COMMD3-215	ENST00000602574	PNN	Q9H307	717 aa	Known RBP	11.75	□□□□□ -0.53
COMMD3-215	ENST00000602574	TMEM51	Q9NW97	253 aa		11.74	□□□□□ -0.53
COMMD3-215	ENST00000602574	RRAGD	Q9NQL2	400 aa	Predicted RBP	11.72	□□□□□ -0.53
COMMD3-215	ENST00000602574	MMP14	P50281	582 aa		11.72	□□□□□ -0.53
COMMD3-215	ENST00000602574	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.71	□□□□□ -0.53
COMMD3-215	ENST00000602574	TPRN	Q4KMQ1	711 aa		11.71	□□□□□ -0.54
COMMD3-215	ENST00000602574	TICAM2	Q86XR7	235 aa		11.71	□□□□□ -0.54
COMMD3-215	ENST00000602574	RGS22	Q8NE09	1264 aa		11.71	□□□□□ -0.54
COMMD3-215	ENST00000602574	CNPY4	Q8N129	248 aa		11.7	□□□□□ -0.54
COMMD3-215	ENST00000602574	GRIPAP1	Q4V328	841 aa		11.7	□□□□□ -0.54
COMMD3-215	ENST00000602574	ZNF830	Q96NB3	372 aa	Predicted RBP	11.7	□□□□□ -0.54
COMMD3-215	ENST00000602574	CLGN	O14967	610 aa		11.69	□□□□□ -0.54
COMMD3-215	ENST00000602574	FRAT1	Q92837	279 aa	Predicted RBP	11.68	□□□□□ -0.54
COMMD3-215	ENST00000602574	TNIK	Q9UKE5	1360 aa		11.68	□□□□□ -0.54
COMMD3-215	ENST00000602574	TAF3	Q5VWG9	929 aa		11.67	□□□□□ -0.54
COMMD3-215	ENST00000602574	SCRIB	Q14160	1630 aa		11.67	□□□□□ -0.54
COMMD3-215	ENST00000602574	PTMA	P06454	111 aa	Known RBP	11.66	□□□□□ -0.54
COMMD3-215	ENST00000602574	CCDC9	Q9Y3X0	531 aa	Known RBP	11.66	□□□□□ -0.54
COMMD3-215	ENST00000602574	DDRGK1	Q96HY6	314 aa		11.66	□□□□□ -0.54
COMMD3-215	ENST00000602574	CCER2	I3L3R5	266 aa		11.65	□□□□□ -0.55
COMMD3-215	ENST00000602574	IRX3	P78415	501 aa	Predicted RBP	11.64	□□□□□ -0.55
COMMD3-215	ENST00000602574	AXDND1	Q5T1B0	1012 aa	Predicted RBP	11.64	□□□□□ -0.55
COMMD3-215	ENST00000602574	KIF20A	O95235	890 aa		11.63	□□□□□ -0.55
COMMD3-215	ENST00000602574	IRX6	P78412	446 aa	Predicted RBP	11.63	□□□□□ -0.55
COMMD3-215	ENST00000602574	DMTN	Q08495	405 aa		11.63	□□□□□ -0.55
COMMD3-215	ENST00000602574	MTERF4	Q7Z6M4	381 aa	Known RBP	11.63	□□□□□ -0.55
COMMD3-215	ENST00000602574	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
COMMD3-215	ENST00000602574	NACAD	O15069	1562 aa		11.63	□□□□□ -0.55
COMMD3-215	ENST00000602574	NCAPD3	P42695	1498 aa		11.63	□□□□□ -0.55
COMMD3-215	ENST00000602574	CLSTN1	O94985	981 aa		11.62	□□□□□ -0.55
COMMD3-215	ENST00000602574	FOXD1	Q16676	465 aa		11.62	□□□□□ -0.55
COMMD3-215	ENST00000602574	DCAF11	Q8TEB1	546 aa		11.62	□□□□□ -0.55
COMMD3-215	ENST00000602574	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	11.62	□□□□□ -0.55
COMMD3-215	ENST00000602574	L1TD1	Q5T7N2	865 aa	Known RBP	11.62	□□□□□ -0.55
COMMD3-215	ENST00000602574	MCC	P23508	829 aa		11.61	□□□□□ -0.55
COMMD3-215	ENST00000602574	TERF1	P54274	439 aa		11.61	□□□□□ -0.55
COMMD3-215	ENST00000602574	CEP162	Q5TB80	1403 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms