RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 PELP1Q8IZL8 1130 aaKnown RBP16.42■□□□□ 0.22
COMMD3-215ENST00000602574 MYT1Q01538 1121 aa16.31■□□□□ 0.2
COMMD3-215ENST00000602574 TTBK1Q5TCY1 1321 aaPredicted RBP15.82■□□□□ 0.12
COMMD3-215ENST00000602574 NISCHQ9Y2I1 1504 aa15□□□□□ -0.01
COMMD3-215ENST00000602574 PRKCSHP14314 528 aaPredicted RBP14.97□□□□□ -0.01
COMMD3-215ENST00000602574 ERICH6Q7L0X2 663 aa14.94□□□□□ -0.02
COMMD3-215ENST00000602574 SLC24A1O60721 1099 aa14.9□□□□□ -0.02
COMMD3-215ENST00000602574 APLP2Q06481 763 aa14.9□□□□□ -0.02
COMMD3-215ENST00000602574 HRCP23327 699 aa14.81□□□□□ -0.04
COMMD3-215ENST00000602574 BCL11AQ9H165 835 aa14.53□□□□□ -0.08
COMMD3-215ENST00000602574 SCAF1Q9H7N4 1312 aaKnown RBP14.48□□□□□ -0.09
COMMD3-215ENST00000602574 DAXXQ9UER7 740 aaPredicted RBP14.37□□□□□ -0.11
COMMD3-215ENST00000602574 FAM9AQ8IZU1 332 aaPredicted RBP14.28□□□□□ -0.12
COMMD3-215ENST00000602574 CENPBP07199 599 aaPredicted RBP14.18□□□□□ -0.14
COMMD3-215ENST00000602574 AEBP2Q6ZN18 517 aaPredicted RBP14.18□□□□□ -0.14
COMMD3-215ENST00000602574 PPARGC1BQ86YN6 1023 aaKnown RBP13.97□□□□□ -0.17
COMMD3-215ENST00000602574 ACIN1Q9UKV3 1341 aaKnown RBP13.91□□□□□ -0.18
COMMD3-215ENST00000602574 EIF5BO60841 1220 aaKnown RBP13.88□□□□□ -0.19
COMMD3-215ENST00000602574 CHIC1Q5VXU3 224 aa13.88□□□□□ -0.19
COMMD3-215ENST00000602574 ANP32EQ9BTT0 268 aa13.84□□□□□ -0.19
COMMD3-215ENST00000602574 ZEB1P37275 1124 aaPredicted RBP13.77□□□□□ -0.21
COMMD3-215ENST00000602574 UBE2Q2Q8WVN8 375 aa13.68□□□□□ -0.22
COMMD3-215ENST00000602574 GTF3C3Q9Y5Q9 886 aa13.67□□□□□ -0.22
COMMD3-215ENST00000602574 NEUROD1Q13562 356 aa13.62□□□□□ -0.23
COMMD3-215ENST00000602574 PCGF6Q9BYE7 350 aa13.56□□□□□ -0.24
COMMD3-215ENST00000602574 CCDC180Q9P1Z9 1646 aa13.54□□□□□ -0.24
COMMD3-215ENST00000602574 CSRNP3Q8WYN3 585 aa13.52□□□□□ -0.24
COMMD3-215ENST00000602574 DCAF1Q9Y4B6 1507 aa13.45□□□□□ -0.26
COMMD3-215ENST00000602574 MYO15BQ96JP2 1530 aa13.39□□□□□ -0.27
COMMD3-215ENST00000602574 ERICH6BQ5W0A0 696 aa13.33□□□□□ -0.28
COMMD3-215ENST00000602574 CLSPNQ9HAW4 1339 aa13.33□□□□□ -0.28
COMMD3-215ENST00000602574 ANO8Q9HCE9 1232 aaPredicted RBP13.32□□□□□ -0.28
COMMD3-215ENST00000602574 PLEKHG5O94827 1062 aa13.32□□□□□ -0.28
COMMD3-215ENST00000602574 PODXL2Q9NZ53 605 aa13.3□□□□□ -0.28
COMMD3-215ENST00000602574 MYT1LQ9UL68 1186 aa13.3□□□□□ -0.28
COMMD3-215ENST00000602574 NCBP3Q53F19 620 aaKnown RBP13.28□□□□□ -0.28
COMMD3-215ENST00000602574 PKNOX2Q96KN3 472 aa13.27□□□□□ -0.29
COMMD3-215ENST00000602574 TRIM26Q12899 539 aaPredicted RBP13.16□□□□□ -0.3
COMMD3-215ENST00000602574 ARXQ96QS3 562 aa13.15□□□□□ -0.3
COMMD3-215ENST00000602574 TSHZ2Q9NRE2 1034 aa13.12□□□□□ -0.31
COMMD3-215ENST00000602574 RANGAP1P46060 587 aaPredicted RBP13.08□□□□□ -0.32
COMMD3-215ENST00000602574 NEFLP07196 543 aa13.05□□□□□ -0.32
COMMD3-215ENST00000602574 SALL2Q9Y467 1007 aaPredicted RBP13.03□□□□□ -0.32
COMMD3-215ENST00000602574 DIEXFQ68CQ4 756 aaKnown RBP12.93□□□□□ -0.34
COMMD3-215ENST00000602574 PDIA4P13667 645 aaKnown RBP12.88□□□□□ -0.35
COMMD3-215ENST00000602574 SUPT16HQ9Y5B9 1047 aaKnown RBP12.85□□□□□ -0.35
COMMD3-215ENST00000602574 PDE4CQ08493 712 aa12.84□□□□□ -0.35
COMMD3-215ENST00000602574 CCDC136Q96JN2 1154 aa12.83□□□□□ -0.36
COMMD3-215ENST00000602574 ZCCHC6Q5VYS8 1495 aaKnown RBP12.83□□□□□ -0.36
COMMD3-215ENST00000602574 DEKP35659 375 aaKnown RBP12.82□□□□□ -0.36
COMMD3-215ENST00000602574 KLHL34Q8N239 644 aa12.82□□□□□ -0.36
COMMD3-215ENST00000602574 GLIPR1L2Q4G1C9 344 aa12.78□□□□□ -0.36
COMMD3-215ENST00000602574 FGD1P98174 961 aa12.76□□□□□ -0.37
COMMD3-215ENST00000602574 TRIM41Q8WV44 630 aa12.74□□□□□ -0.37
COMMD3-215ENST00000602574 FANCIQ9NVI1 1328 aa12.73□□□□□ -0.37
COMMD3-215ENST00000602574 TAF7LQ5H9L4 462 aa12.68□□□□□ -0.38
COMMD3-215ENST00000602574 RBM19Q9Y4C8 960 aaKnown RBP12.67□□□□□ -0.38
COMMD3-215ENST00000602574 AAMPQ13685 434 aa12.64□□□□□ -0.39
COMMD3-215ENST00000602574 SUPT5HO00267 1087 aaKnown RBP12.63□□□□□ -0.39
COMMD3-215ENST00000602574 MSH5O43196 834 aa12.63□□□□□ -0.39
COMMD3-215ENST00000602574 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.61□□□□□ -0.39
COMMD3-215ENST00000602574 SHROOM4Q9ULL8 1493 aa12.61□□□□□ -0.39
COMMD3-215ENST00000602574 TIMELESSQ9UNS1 1208 aa12.6□□□□□ -0.39
COMMD3-215ENST00000602574 HOMEZQ8IX15 550 aa12.6□□□□□ -0.39
COMMD3-215ENST00000602574 ZMYND15Q9H091 742 aa12.6□□□□□ -0.39
COMMD3-215ENST00000602574 RSPH6AQ9H0K4 717 aa12.55□□□□□ -0.4
COMMD3-215ENST00000602574 BCL11BQ9C0K0 894 aaPredicted RBP12.54□□□□□ -0.4
COMMD3-215ENST00000602574 YTHDC1Q96MU7 727 aaKnown RBP12.51□□□□□ -0.41
COMMD3-215ENST00000602574 RBM10P98175 930 aaKnown RBP12.51□□□□□ -0.41
COMMD3-215ENST00000602574 ZNF316A6NFI3 1004 aaPredicted RBP12.5□□□□□ -0.41
COMMD3-215ENST00000602574 C11orf95C9JLR9 678 aaPredicted RBP12.5□□□□□ -0.41
COMMD3-215ENST00000602574 ZNF326Q5BKZ1 582 aaKnown RBP12.48□□□□□ -0.41
COMMD3-215ENST00000602574 CCER1Q8TC90 406 aaPredicted RBP12.48□□□□□ -0.41
COMMD3-215ENST00000602574 RTN4Q9NQC3 1192 aaKnown RBP12.48□□□□□ -0.41
COMMD3-215ENST00000602574 IL27Q8NEV9 243 aa12.46□□□□□ -0.42
COMMD3-215ENST00000602574 RSPH4AQ5TD94 716 aa12.44□□□□□ -0.42
COMMD3-215ENST00000602574 VSIG10Q8N0Z9 540 aa12.43□□□□□ -0.42
COMMD3-215ENST00000602574 A0A0U1RQG5 324 aaPredicted RBP12.41□□□□□ -0.42
COMMD3-215ENST00000602574 BRD2P25440 801 aaKnown RBP12.41□□□□□ -0.42
COMMD3-215ENST00000602574 MIER1Q8N108 512 aa12.39□□□□□ -0.43
COMMD3-215ENST00000602574 PLPPR3Q6T4P5 718 aa12.36□□□□□ -0.43
COMMD3-215ENST00000602574 TULP1O00294 542 aaPredicted RBP12.32□□□□□ -0.44
COMMD3-215ENST00000602574 SENP3Q9H4L4 574 aaPredicted RBP12.32□□□□□ -0.44
COMMD3-215ENST00000602574 WASHC2CQ9Y4E1 1318 aa12.3□□□□□ -0.44
COMMD3-215ENST00000602574 RRP9O43818 475 aaKnown RBP12.27□□□□□ -0.44
COMMD3-215ENST00000602574 RTL5Q5HYW3 569 aaPredicted RBP12.26□□□□□ -0.45
COMMD3-215ENST00000602574 WASHC2AQ641Q2 1341 aa12.26□□□□□ -0.45
COMMD3-215ENST00000602574 NPM2Q86SE8 214 aaKnown RBP12.26□□□□□ -0.45
COMMD3-215ENST00000602574 CHMP4AQ9BY43 222 aa12.25□□□□□ -0.45
COMMD3-215ENST00000602574 ABCC9O60706 1549 aa12.23□□□□□ -0.45
COMMD3-215ENST00000602574 NOP58Q9Y2X3 529 aaKnown RBP12.23□□□□□ -0.45
COMMD3-215ENST00000602574 NAP1L5Q96NT1 182 aaPredicted RBP12.22□□□□□ -0.45
COMMD3-215ENST00000602574 AMER1Q5JTC6 1135 aaPredicted RBP12.2□□□□□ -0.46
COMMD3-215ENST00000602574 USP35Q9P2H5 1018 aa12.2□□□□□ -0.46
COMMD3-215ENST00000602574 FAM43AQ8N2R8 423 aa12.19□□□□□ -0.46
COMMD3-215ENST00000602574 FBXO3Q9UK99 471 aa12.18□□□□□ -0.46
COMMD3-215ENST00000602574 IPO4Q8TEX9 1081 aaKnown RBP12.17□□□□□ -0.46
COMMD3-215ENST00000602574 NAP1L2Q9ULW6 460 aaPredicted RBP12.17□□□□□ -0.46
COMMD3-215ENST00000602574 CDK11AQ9UQ88 783 aaPredicted RBP12.17□□□□□ -0.46
COMMD3-215ENST00000602574 SAMD1Q6SPF0 538 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms