RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
LIG1-206ENST00000594067 ATP1B4Q9UN42 357 aaPredicted RBP23.89■■□□□ 1.42
LIG1-206ENST00000594067 CC2D2AQ9P2K1 1620 aa23.87■■□□□ 1.41
LIG1-206ENST00000594067 FAM50AQ14320 339 aaKnown RBP23.87■■□□□ 1.41
LIG1-206ENST00000594067 FHAD1B1AJZ9 1412 aa23.86■■□□□ 1.41
LIG1-206ENST00000594067 MAPKBP1O60336 1514 aa23.85■■□□□ 1.41
LIG1-206ENST00000594067 SETD5Q9C0A6 1442 aa23.85■■□□□ 1.41
LIG1-206ENST00000594067 RAD54L2Q9Y4B4 1467 aa23.84■■□□□ 1.41
LIG1-206ENST00000594067 PCF11O94913 1555 aaKnown RBP23.82■■□□□ 1.4
LIG1-206ENST00000594067 FHOD3Q2V2M9 1422 aa23.81■■□□□ 1.4
LIG1-206ENST00000594067 DNMBPQ6XZF7 1577 aa23.77■■□□□ 1.4
LIG1-206ENST00000594067 CFAP43Q8NDM7 1665 aa23.76■■□□□ 1.39
LIG1-206ENST00000594067 POLA1P09884 1462 aaPredicted RBP23.76■■□□□ 1.39
LIG1-206ENST00000594067 ABCA10Q8WWZ4 1543 aa23.75■■□□□ 1.39
LIG1-206ENST00000594067 TOPBP1Q92547 1522 aa23.75■■□□□ 1.39
LIG1-206ENST00000594067 SIN3AQ96ST3 1273 aa23.75■■□□□ 1.39
LIG1-206ENST00000594067 SUPT16HQ9Y5B9 1047 aaKnown RBP23.75■■□□□ 1.39
LIG1-206ENST00000594067 NESP48681 1621 aa23.73■■□□□ 1.39
LIG1-206ENST00000594067 FYCO1Q9BQS8 1478 aa23.68■■□□□ 1.38
LIG1-206ENST00000594067 CASKIN1Q8WXD9 1431 aa23.67■■□□□ 1.38
LIG1-206ENST00000594067 EFCAB5A4FU69 1503 aa23.66■■□□□ 1.38
LIG1-206ENST00000594067 WDR97A6NE52 1622 aa23.64■■□□□ 1.38
LIG1-206ENST00000594067 KCNH8Q96L42 1107 aa23.63■■□□□ 1.37
LIG1-206ENST00000594067 AQRO60306 1485 aaKnown RBP eCLIP23.62■■□□□ 1.371e-7■■■■■ 34.9
LIG1-206ENST00000594067 CUL7Q14999 1698 aa23.62■■□□□ 1.37
LIG1-206ENST00000594067 DDX10Q13206 875 aaKnown RBP23.58■■□□□ 1.37
LIG1-206ENST00000594067 CTTNBP2Q8WZ74 1663 aa23.58■■□□□ 1.37
LIG1-206ENST00000594067 FMN1Q68DA7 1419 aa23.57■■□□□ 1.36
LIG1-206ENST00000594067 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.56■■□□□ 1.36
LIG1-206ENST00000594067 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
LIG1-206ENST00000594067 URB2Q14146 1524 aaKnown RBP23.54■■□□□ 1.36
LIG1-206ENST00000594067 FGD6Q6ZV73 1430 aa23.54■■□□□ 1.36
LIG1-206ENST00000594067 TIMELESSQ9UNS1 1208 aa23.53■■□□□ 1.36
LIG1-206ENST00000594067 SNAPC4Q5SXM2 1469 aa23.53■■□□□ 1.36
LIG1-206ENST00000594067 MTUS2Q5JR59 1369 aa23.52■■□□□ 1.36
LIG1-206ENST00000594067 HIRIP3Q9BW71 556 aaPredicted RBP23.52■■□□□ 1.36
LIG1-206ENST00000594067 PPP1R15AO75807 674 aaPredicted RBP23.5■■□□□ 1.35
LIG1-206ENST00000594067 TSHZ2Q9NRE2 1034 aa23.48■■□□□ 1.35
LIG1-206ENST00000594067 PTPRKQ15262 1439 aa23.46■■□□□ 1.35
LIG1-206ENST00000594067 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
LIG1-206ENST00000594067 GAPVD1Q14C86 1478 aa23.44■■□□□ 1.34
LIG1-206ENST00000594067 CCDC18Q5T9S5 1454 aa23.44■■□□□ 1.34
LIG1-206ENST00000594067 ABCA5Q8WWZ7 1642 aa23.42■■□□□ 1.34
LIG1-206ENST00000594067 SAMD9Q5K651 1589 aa23.42■■□□□ 1.34
LIG1-206ENST00000594067 TONSLQ96HA7 1378 aa23.4■■□□□ 1.34
LIG1-206ENST00000594067 NCOA2Q15596 1464 aa23.4■■□□□ 1.34
LIG1-206ENST00000594067 HFM1A2PYH4 1435 aa23.39■■□□□ 1.34
LIG1-206ENST00000594067 GRIN2BQ13224 1484 aa23.39■■□□□ 1.33
LIG1-206ENST00000594067 LRRIQ1Q96JM4 1722 aa23.38■■□□□ 1.33
LIG1-206ENST00000594067 MYOM3Q5VTT5 1437 aa23.37■■□□□ 1.33
LIG1-206ENST00000594067 UACAQ9BZF9 1416 aa23.37■■□□□ 1.33
LIG1-206ENST00000594067 DNAJC5BQ9UF47 199 aa23.36■■□□□ 1.33
LIG1-206ENST00000594067 PTPN23Q9H3S7 1636 aa23.35■■□□□ 1.33
LIG1-206ENST00000594067 PDS5BQ9NTI5 1447 aa23.34■■□□□ 1.33
LIG1-206ENST00000594067 NAIPQ13075 1403 aa23.34■■□□□ 1.33
LIG1-206ENST00000594067 ANP32CO43423 234 aa23.3■■□□□ 1.32
LIG1-206ENST00000594067 EHBP1L1Q8N3D4 1523 aa23.3■■□□□ 1.32
LIG1-206ENST00000594067 SUPT6HQ7KZ85 1726 aaKnown RBP23.29■■□□□ 1.32
LIG1-206ENST00000594067 THOC2Q8NI27 1593 aaKnown RBP23.28■■□□□ 1.32
LIG1-206ENST00000594067 RRP7BPQ9NSQ0 103 aa23.26■■□□□ 1.31
LIG1-206ENST00000594067 MAGI3Q5TCQ9 1506 aa23.26■■□□□ 1.31
LIG1-206ENST00000594067 CCER2I3L3R5 266 aa23.26■■□□□ 1.31
LIG1-206ENST00000594067 CHIC2Q9UKJ5 165 aa23.26■■□□□ 1.31
LIG1-206ENST00000594067 UGGT2Q9NYU1 1516 aa23.25■■□□□ 1.31
LIG1-206ENST00000594067 BCANQ96GW7 911 aa23.25■■□□□ 1.31
LIG1-206ENST00000594067 KIF21AQ7Z4S6 1674 aa23.23■■□□□ 1.31
LIG1-206ENST00000594067 ANP32EQ9BTT0 268 aa23.23■■□□□ 1.31
LIG1-206ENST00000594067 FKBP8Q14318 412 aa23.22■■□□□ 1.31
LIG1-206ENST00000594067 TRIM52Q96A61 297 aa23.22■■□□□ 1.31
LIG1-206ENST00000594067 TARBP1Q13395 1621 aaKnown RBP23.21■■□□□ 1.31
LIG1-206ENST00000594067 ARHGEF11O15085 1522 aa23.21■■□□□ 1.31
LIG1-206ENST00000594067 ARID3CA6NKF2 412 aa23.18■■□□□ 1.3
LIG1-206ENST00000594067 KDM5BQ9UGL1 1544 aa23.16■■□□□ 1.3
LIG1-206ENST00000594067 TCOF1Q13428 1488 aaKnown RBP23.14■■□□□ 1.3
LIG1-206ENST00000594067 HECW1Q76N89 1606 aa23.14■■□□□ 1.29
LIG1-206ENST00000594067 EPRSP07814 1512 aaKnown RBP23.13■■□□□ 1.29
LIG1-206ENST00000594067 CDK13Q14004 1512 aaKnown RBP23.12■■□□□ 1.29
LIG1-206ENST00000594067 IQGAP2Q13576 1575 aa23.12■■□□□ 1.29
LIG1-206ENST00000594067 DENND4BO75064 1496 aaPredicted RBP23.1■■□□□ 1.29
LIG1-206ENST00000594067 PBRM1Q86U86 1689 aa23.1■■□□□ 1.29
LIG1-206ENST00000594067 KDM6BO15054 1643 aa23.08■■□□□ 1.29
LIG1-206ENST00000594067 NEFLP07196 543 aa23.08■■□□□ 1.29
LIG1-206ENST00000594067 HSPA5P11021 654 aaKnown RBP23.07■■□□□ 1.28
LIG1-206ENST00000594067 GCC2Q8IWJ2 1684 aa23.06■■□□□ 1.28
LIG1-206ENST00000594067 ADAMTS12P58397 1594 aa23.06■■□□□ 1.28
LIG1-206ENST00000594067 MPHOSPH9Q99550 1183 aa23.05■■□□□ 1.28
LIG1-206ENST00000594067 MIA2Q96PC5 1412 aa23.04■■□□□ 1.28
LIG1-206ENST00000594067 AKNAQ7Z591 1439 aa23.04■■□□□ 1.28
LIG1-206ENST00000594067 FOXD1Q16676 465 aa23.04■■□□□ 1.28
LIG1-206ENST00000594067 WDR62O43379 1518 aa23.03■■□□□ 1.28
LIG1-206ENST00000594067 WASHC2AQ641Q2 1341 aa23.02■■□□□ 1.28
LIG1-206ENST00000594067 RBM19Q9Y4C8 960 aaKnown RBP22.99■■□□□ 1.27
LIG1-206ENST00000594067 L3MBTL2Q969R5 705 aa22.99■■□□□ 1.27
LIG1-206ENST00000594067 EIF4G2P78344 907 aaKnown RBP eCLIP22.98■■□□□ 1.271e-11■■■■■ 55.3
LIG1-206ENST00000594067 MRC2Q9UBG0 1479 aa22.97■■□□□ 1.27
LIG1-206ENST00000594067 HNRNPUQ00839 825 aaKnown RBP eCLIP22.95■■□□□ 1.27
LIG1-206ENST00000594067 ZNF608Q9ULD9 1512 aaPredicted RBP22.94■■□□□ 1.26
LIG1-206ENST00000594067 ZNF644Q9H582 1327 aaPredicted RBP22.93■■□□□ 1.26
LIG1-206ENST00000594067 DAPK1P53355 1430 aa22.93■■□□□ 1.26
LIG1-206ENST00000594067 ABCC5O15440 1437 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms