RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 PHF23Q9BUL5 403 aaPredicted RBP6.36□□□□□ -1.39
VRK3-204ENST00000593912 PBRM1Q86U86 1689 aa6.36□□□□□ -1.39
VRK3-204ENST00000593912 TOP2BQ02880 1626 aa6.36□□□□□ -1.39
VRK3-204ENST00000593912 GRIN2BQ13224 1484 aa6.35□□□□□ -1.39
VRK3-204ENST00000593912 SHROOM2Q13796 1616 aa6.35□□□□□ -1.39
VRK3-204ENST00000593912 SOGA1O94964 1423 aa6.34□□□□□ -1.39
VRK3-204ENST00000593912 ADCY10Q96PN6 1610 aa6.34□□□□□ -1.39
VRK3-204ENST00000593912 WDR97A6NE52 1622 aa6.32□□□□□ -1.4
VRK3-204ENST00000593912 PCF11O94913 1555 aaKnown RBP6.31□□□□□ -1.4
VRK3-204ENST00000593912 NPM1P06748 294 aaKnown RBP eCLIP6.31□□□□□ -1.4
VRK3-204ENST00000593912 KIF21BO75037 1637 aa6.3□□□□□ -1.4
VRK3-204ENST00000593912 TOP2AP11388 1531 aaKnown RBP6.3□□□□□ -1.4
VRK3-204ENST00000593912 GRIN2AQ12879 1464 aa6.29□□□□□ -1.4
VRK3-204ENST00000593912 FGD5Q6ZNL6 1462 aa6.29□□□□□ -1.4
VRK3-204ENST00000593912 NUP160Q12769 1436 aa6.28□□□□□ -1.4
VRK3-204ENST00000593912 PRG4Q92954 1404 aaPredicted RBP6.28□□□□□ -1.4
VRK3-204ENST00000593912 HSPA2P54652 639 aa6.28□□□□□ -1.4
VRK3-204ENST00000593912 PTPRMP28827 1452 aa6.28□□□□□ -1.4
VRK3-204ENST00000593912 FOXD1Q16676 465 aa6.27□□□□□ -1.41
VRK3-204ENST00000593912 CCDC88BA6NC98 1476 aa6.24□□□□□ -1.41
VRK3-204ENST00000593912 ADAMTSL3P82987 1691 aa6.23□□□□□ -1.41
VRK3-204ENST00000593912 ADAMTS12P58397 1594 aa6.23□□□□□ -1.41
VRK3-204ENST00000593912 ABCA5Q8WWZ7 1642 aa6.23□□□□□ -1.41
VRK3-204ENST00000593912 GLI2P10070 1586 aa6.23□□□□□ -1.41
VRK3-204ENST00000593912 MADDQ8WXG6 1647 aa6.21□□□□□ -1.41
VRK3-204ENST00000593912 MAP3K4Q9Y6R4 1608 aa6.21□□□□□ -1.41
VRK3-204ENST00000593912 CUX1P39880 1505 aa6.2□□□□□ -1.42
VRK3-204ENST00000593912 MED1Q15648 1581 aaPredicted RBP6.2□□□□□ -1.42
VRK3-204ENST00000593912 ASXL2Q76L83 1435 aa6.2□□□□□ -1.42
VRK3-204ENST00000593912 JPH4Q96JJ6 628 aa6.2□□□□□ -1.42
VRK3-204ENST00000593912 CUL7Q14999 1698 aa6.19□□□□□ -1.42
VRK3-204ENST00000593912 RIMS1Q86UR5 1692 aaKnown RBP6.18□□□□□ -1.42
VRK3-204ENST00000593912 TEX14Q8IWB6 1497 aa6.18□□□□□ -1.42
VRK3-204ENST00000593912 PLPPR3Q6T4P5 718 aa6.18□□□□□ -1.42
VRK3-204ENST00000593912 RUSC2Q8N2Y8 1516 aa6.17□□□□□ -1.42
VRK3-204ENST00000593912 BCORL1Q5H9F3 1711 aa6.16□□□□□ -1.42
VRK3-204ENST00000593912 MSH5O43196 834 aa6.16□□□□□ -1.42
VRK3-204ENST00000593912 TTBK1Q5TCY1 1321 aaPredicted RBP6.16□□□□□ -1.42
VRK3-204ENST00000593912 PLB1Q6P1J6 1458 aa6.15□□□□□ -1.42
VRK3-204ENST00000593912 EPRSP07814 1512 aaKnown RBP6.15□□□□□ -1.42
VRK3-204ENST00000593912 ABCC2Q92887 1545 aa6.15□□□□□ -1.42
VRK3-204ENST00000593912 ABCA10Q8WWZ4 1543 aa6.15□□□□□ -1.43
VRK3-204ENST00000593912 STRCQ7RTU9 1775 aa6.14□□□□□ -1.43
VRK3-204ENST00000593912 FHAD1B1AJZ9 1412 aa6.14□□□□□ -1.43
VRK3-204ENST00000593912 SRCAPQ6ZRS2 3230 aa6.12□□□□□ -1.43
VRK3-204ENST00000593912 LTBP4Q8N2S1 1624 aa6.12□□□□□ -1.43
VRK3-204ENST00000593912 KIAA0586Q9BVV6 1533 aa6.12□□□□□ -1.43
VRK3-204ENST00000593912 YEATS2Q9ULM3 1422 aa6.08□□□□□ -1.44
VRK3-204ENST00000593912 ARID4BQ4LE39 1312 aaPredicted RBP6.08□□□□□ -1.44
VRK3-204ENST00000593912 UBAP1LF5GYI3 381 aa6.08□□□□□ -1.44
VRK3-204ENST00000593912 PTPRGP23470 1445 aa6.08□□□□□ -1.44
VRK3-204ENST00000593912 ZCCHC11Q5TAX3 1644 aaKnown RBP6.07□□□□□ -1.44
VRK3-204ENST00000593912 HSPA1LP34931 641 aa6.07□□□□□ -1.44
VRK3-204ENST00000593912 IQSEC2Q5JU85 1478 aa6.07□□□□□ -1.44
VRK3-204ENST00000593912 CFAP43Q8NDM7 1665 aa6.07□□□□□ -1.44
VRK3-204ENST00000593912 PREX1Q8TCU6 1659 aa6.06□□□□□ -1.44
VRK3-204ENST00000593912 SETD1AO15047 1707 aaKnown RBP6.05□□□□□ -1.44
VRK3-204ENST00000593912 MAGI3Q5TCQ9 1506 aa6.05□□□□□ -1.44
VRK3-204ENST00000593912 CD109Q6YHK3 1445 aa6.05□□□□□ -1.44
VRK3-204ENST00000593912 ERICH3Q5RHP9 1530 aa6.04□□□□□ -1.44
VRK3-204ENST00000593912 DMRT2Q9Y5R5 561 aa6.04□□□□□ -1.44
VRK3-204ENST00000593912 SIGLEC1Q9BZZ2 1709 aa6.04□□□□□ -1.44
VRK3-204ENST00000593912 UHRF1BP1LA0JNW5 1464 aa6.03□□□□□ -1.44
VRK3-204ENST00000593912 SCAF1Q9H7N4 1312 aaKnown RBP6.03□□□□□ -1.44
VRK3-204ENST00000593912 ARAP3Q8WWN8 1544 aa6.03□□□□□ -1.44
VRK3-204ENST00000593912 KDM5BQ9UGL1 1544 aa6.03□□□□□ -1.44
VRK3-204ENST00000593912 FER1L4A9Z1Z3 1794 aa6.03□□□□□ -1.44
VRK3-204ENST00000593912 WDR7Q9Y4E6 1490 aa6.02□□□□□ -1.44
VRK3-204ENST00000593912 FRMPD1Q5SYB0 1578 aa6.02□□□□□ -1.45
VRK3-204ENST00000593912 PTPRTO14522 1441 aa6.02□□□□□ -1.45
VRK3-204ENST00000593912 RAPGEF3O95398 923 aa6.02□□□□□ -1.45
VRK3-204ENST00000593912 RGS17Q9UGC6 210 aaPredicted RBP6.02□□□□□ -1.45
VRK3-204ENST00000593912 UACAQ9BZF9 1416 aa6.01□□□□□ -1.45
VRK3-204ENST00000593912 PIP4K2BP78356 416 aa6.01□□□□□ -1.45
VRK3-204ENST00000593912 TNIKQ9UKE5 1360 aa6.01□□□□□ -1.45
VRK3-204ENST00000593912 TTC37Q6PGP7 1564 aa6.01□□□□□ -1.45
VRK3-204ENST00000593912 KCNH8Q96L42 1107 aa6□□□□□ -1.45
VRK3-204ENST00000593912 ARHGEF40Q8TER5 1519 aa5.99□□□□□ -1.45
VRK3-204ENST00000593912 CEBPAP49715 358 aaPredicted RBP5.99□□□□□ -1.45
VRK3-204ENST00000593912 MLECQ14165 292 aa5.99□□□□□ -1.45
VRK3-204ENST00000593912 ZNF335Q9H4Z2 1342 aaPredicted RBP5.99□□□□□ -1.45
VRK3-204ENST00000593912 WRNQ14191 1432 aaPredicted RBP eCLIP5.98□□□□□ -1.45
VRK3-204ENST00000593912 UHRF1BP1Q6BDS2 1440 aa5.97□□□□□ -1.45
VRK3-204ENST00000593912 POTEAQ6S8J7 498 aa5.96□□□□□ -1.46
VRK3-204ENST00000593912 CARMIL2Q6F5E8 1435 aa5.95□□□□□ -1.46
VRK3-204ENST00000593912 FANCAO15360 1455 aa5.95□□□□□ -1.46
VRK3-204ENST00000593912 NCOA1Q15788 1441 aa5.93□□□□□ -1.46
VRK3-204ENST00000593912 POGZQ7Z3K3 1410 aa5.93□□□□□ -1.46
VRK3-204ENST00000593912 DISP1Q96F81 1524 aa5.93□□□□□ -1.46
VRK3-204ENST00000593912 KIAA0556O60303 1618 aa5.92□□□□□ -1.46
VRK3-204ENST00000593912 BIVM-ERCC5R4GMW8 1640 aa5.92□□□□□ -1.46
VRK3-204ENST00000593912 RICTORQ6R327 1708 aa5.92□□□□□ -1.46
VRK3-204ENST00000593912 UPF1Q92900 1129 aaKnown RBP eCLIP5.92□□□□□ -1.46
VRK3-204ENST00000593912 ARHGEF12Q9NZN5 1544 aa5.92□□□□□ -1.46
VRK3-204ENST00000593912 ALKQ9UM73 1620 aa5.92□□□□□ -1.46
VRK3-204ENST00000593912 SETD1BQ9UPS6 1966 aaKnown RBP5.91□□□□□ -1.46
VRK3-204ENST00000593912 CAMSAP1Q5T5Y3 1602 aa5.9□□□□□ -1.46
VRK3-204ENST00000593912 NCKAP5LQ9HCH0 1330 aa5.9□□□□□ -1.47
VRK3-204ENST00000593912 AKNAQ7Z591 1439 aa5.9□□□□□ -1.47
VRK3-204ENST00000593912 IQGAP2Q13576 1575 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms