RNA–Protein interactions for RNA: ENST00000560983.1

HERC1-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-211ENST00000560983 ZBTB47Q9UFB7 747 aaPredicted RBP10.06□□□□□ -0.8
HERC1-211ENST00000560983 FBXO3Q9UK99 471 aa10.06□□□□□ -0.8
HERC1-211ENST00000560983 MS4A3Q96HJ5 214 aa10.05□□□□□ -0.8
HERC1-211ENST00000560983 LHX8Q68G74 356 aa10.03□□□□□ -0.8
HERC1-211ENST00000560983 KIF12Q96FN5 646 aa10.03□□□□□ -0.8
HERC1-211ENST00000560983 ASTLQ6HA08 431 aaPredicted RBP9.99□□□□□ -0.81
HERC1-211ENST00000560983 VASPP50552 380 aaPredicted RBP9.96□□□□□ -0.82
HERC1-211ENST00000560983 PELP1Q8IZL8 1130 aaKnown RBP9.96□□□□□ -0.82
HERC1-211ENST00000560983 ATMINO43313 823 aaPredicted RBP9.95□□□□□ -0.82
HERC1-211ENST00000560983 MAP3K13O43283 966 aa9.94□□□□□ -0.82
HERC1-211ENST00000560983 SGIP1Q9BQI5 828 aa9.93□□□□□ -0.82
HERC1-211ENST00000560983 FAM212AQ96EL1 285 aa9.91□□□□□ -0.82
HERC1-211ENST00000560983 TRPC6Q9Y210 931 aa9.91□□□□□ -0.82
HERC1-211ENST00000560983 TIE1P35590 1138 aa9.89□□□□□ -0.83
HERC1-211ENST00000560983 BMP2KQ9NSY1 1161 aaPredicted RBP9.88□□□□□ -0.83
HERC1-211ENST00000560983 POTEB2H3BUK9 544 aa9.87□□□□□ -0.83
HERC1-211ENST00000560983 ATN1P54259 1190 aaPredicted RBP9.87□□□□□ -0.83
HERC1-211ENST00000560983 SLC39A7Q92504 469 aa9.86□□□□□ -0.83
HERC1-211ENST00000560983 NISCHQ9Y2I1 1504 aa9.86□□□□□ -0.83
HERC1-211ENST00000560983 C7P10643 843 aa9.84□□□□□ -0.83
HERC1-211ENST00000560983 METRNQ9UJH8 293 aa9.84□□□□□ -0.83
HERC1-211ENST00000560983 PCDHB13Q9Y5F0 798 aa9.84□□□□□ -0.83
HERC1-211ENST00000560983 IFNL1Q8IU54 200 aa9.82□□□□□ -0.84
HERC1-211ENST00000560983 TTLL13PA6NNM8 815 aa9.81□□□□□ -0.84
HERC1-211ENST00000560983 IFNLR1Q8IU57 520 aaPredicted RBP9.81□□□□□ -0.84
HERC1-211ENST00000560983 DCAF8Q5TAQ9 597 aa9.8□□□□□ -0.84
HERC1-211ENST00000560983 OTUD5Q96G74 571 aa9.8□□□□□ -0.84
HERC1-211ENST00000560983 POTEFA5A3E0 1075 aa9.79□□□□□ -0.84
HERC1-211ENST00000560983 KLHL34Q8N239 644 aa9.79□□□□□ -0.84
HERC1-211ENST00000560983 POTEJP0CG39 1038 aa9.77□□□□□ -0.85
HERC1-211ENST00000560983 GSE1Q14687 1217 aa9.77□□□□□ -0.85
HERC1-211ENST00000560983 PYGBP11216 843 aa9.75□□□□□ -0.85
HERC1-211ENST00000560983 CHRM1P11229 460 aaPredicted RBP9.75□□□□□ -0.85
HERC1-211ENST00000560983 IER5LQ5T953 404 aa9.73□□□□□ -0.85
HERC1-211ENST00000560983 SPOCK2Q92563 424 aa9.73□□□□□ -0.85
HERC1-211ENST00000560983 TRIM35Q9UPQ4 493 aa9.73□□□□□ -0.85
HERC1-211ENST00000560983 TMEM106CQ9BVX2 250 aa9.7□□□□□ -0.86
HERC1-211ENST00000560983 COLQQ9Y215 455 aaPredicted RBP9.69□□□□□ -0.86
HERC1-211ENST00000560983 PCDHB8Q9UN66 801 aa9.68□□□□□ -0.86
HERC1-211ENST00000560983 ZNF467Q7Z7K2 595 aaPredicted RBP9.66□□□□□ -0.86
HERC1-211ENST00000560983 MAMSTRQ6ZN01 415 aa9.65□□□□□ -0.86
HERC1-211ENST00000560983 IRX5P78411 483 aaPredicted RBP9.64□□□□□ -0.87
HERC1-211ENST00000560983 SEC24BO95487 1268 aa9.6□□□□□ -0.87
HERC1-211ENST00000560983 SCUBE2Q9NQ36 999 aa9.59□□□□□ -0.87
HERC1-211ENST00000560983 ABCC9O60706 1549 aa9.58□□□□□ -0.88
HERC1-211ENST00000560983 CIZ1Q9ULV3 898 aaPredicted RBP9.58□□□□□ -0.88
HERC1-211ENST00000560983 TRIM41Q8WV44 630 aa9.57□□□□□ -0.88
HERC1-211ENST00000560983 PSEN1P49768 467 aa9.56□□□□□ -0.88
HERC1-211ENST00000560983 PLCG2P16885 1265 aa9.55□□□□□ -0.88
HERC1-211ENST00000560983 PDAP1Q13442 181 aaKnown RBP9.55□□□□□ -0.88
HERC1-211ENST00000560983 OCEL1Q9H607 264 aa9.55□□□□□ -0.88
HERC1-211ENST00000560983 ILDR1Q86SU0 546 aaPredicted RBP9.54□□□□□ -0.88
HERC1-211ENST00000560983 PDCD7Q8N8D1 485 aaKnown RBP9.52□□□□□ -0.89
HERC1-211ENST00000560983 LCE2DQ5TA82 110 aaPredicted RBP9.51□□□□□ -0.89
HERC1-211ENST00000560983 RNF25Q96BH1 459 aaPredicted RBP9.47□□□□□ -0.89
HERC1-211ENST00000560983 MKRN3Q13064 507 aaKnown RBP9.46□□□□□ -0.9
HERC1-211ENST00000560983 GOLGA2Q08379 1002 aa9.43□□□□□ -0.9
HERC1-211ENST00000560983 POTEMA6NI47 508 aa9.42□□□□□ -0.9
HERC1-211ENST00000560983 CABP2Q9NPB3 220 aa9.42□□□□□ -0.9
HERC1-211ENST00000560983 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.42□□□□□ -0.91e-9■■□□□ 13.7
HERC1-211ENST00000560983 RIOK3O14730 519 aaKnown RBP9.41□□□□□ -0.9
HERC1-211ENST00000560983 SLAIN1Q8ND83 568 aa9.41□□□□□ -0.9
HERC1-211ENST00000560983 POTEGQ6S5H5 508 aa9.4□□□□□ -0.9
HERC1-211ENST00000560983 L3MBTL3Q96JM7 780 aaPredicted RBP9.39□□□□□ -0.91
HERC1-211ENST00000560983 VGFO15240 615 aaPredicted RBP9.37□□□□□ -0.91
HERC1-211ENST00000560983 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.37□□□□□ -0.91
HERC1-211ENST00000560983 FAM163AQ96GL9 167 aaPredicted RBP9.36□□□□□ -0.91
HERC1-211ENST00000560983 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.35□□□□□ -0.91
HERC1-211ENST00000560983 DPY19L2Q6NUT2 758 aa9.35□□□□□ -0.91
HERC1-211ENST00000560983 EFCAB3Q8N7B9 438 aa9.35□□□□□ -0.91
HERC1-211ENST00000560983 ZFP91Q96JP5 570 aaPredicted RBP9.35□□□□□ -0.91
HERC1-211ENST00000560983 PLSCR2Q9NRY7 297 aa9.34□□□□□ -0.91
HERC1-211ENST00000560983 PKD2Q13563 968 aa9.33□□□□□ -0.92
HERC1-211ENST00000560983 TMEM121BQ9BXQ6 578 aaPredicted RBP9.32□□□□□ -0.92
HERC1-211ENST00000560983 PCDH10Q9P2E7 1040 aa9.31□□□□□ -0.92
HERC1-211ENST00000560983 SOX12O15370 315 aa9.3□□□□□ -0.92
HERC1-211ENST00000560983 ST18O60284 1047 aa9.3□□□□□ -0.92
HERC1-211ENST00000560983 C3orf67Q6ZVT6 689 aa9.3□□□□□ -0.92
HERC1-211ENST00000560983 BOLA1Q9Y3E2 137 aa9.3□□□□□ -0.92
HERC1-211ENST00000560983 ECM2O94769 699 aaPredicted RBP9.27□□□□□ -0.93
HERC1-211ENST00000560983 MS4A4AQ96JQ5 239 aa9.27□□□□□ -0.93
HERC1-211ENST00000560983 SNPHO15079 494 aa9.26□□□□□ -0.93
HERC1-211ENST00000560983 TAOK2Q9UL54 1235 aa9.26□□□□□ -0.93
HERC1-211ENST00000560983 RGL2O15211 777 aa9.24□□□□□ -0.93
HERC1-211ENST00000560983 BCL11BQ9C0K0 894 aaPredicted RBP9.23□□□□□ -0.93
HERC1-211ENST00000560983 PHF8Q9UPP1 1060 aa9.23□□□□□ -0.93
HERC1-211ENST00000560983 FBXO22Q8NEZ5 403 aa9.22□□□□□ -0.93
HERC1-211ENST00000560983 MICALL2Q8IY33 904 aa9.21□□□□□ -0.94
HERC1-211ENST00000560983 G3V3G9 751 aa9.19□□□□□ -0.94
HERC1-211ENST00000560983 HOXB3P14651 431 aaPredicted RBP9.18□□□□□ -0.94
HERC1-211ENST00000560983 TMEM92Q6UXU6 159 aa9.18□□□□□ -0.94
HERC1-211ENST00000560983 MFRPQ9BY79 579 aa9.18□□□□□ -0.94
HERC1-211ENST00000560983 STK24Q9Y6E0 443 aa9.18□□□□□ -0.94
HERC1-211ENST00000560983 NLRP6P59044 892 aa9.17□□□□□ -0.94
HERC1-211ENST00000560983 STK25O00506 426 aa9.16□□□□□ -0.94
HERC1-211ENST00000560983 DNAJC5Q9H3Z4 198 aa9.16□□□□□ -0.94
HERC1-211ENST00000560983 CDAN1Q8IWY9 1227 aa9.15□□□□□ -0.94
HERC1-211ENST00000560983 MARVELD3Q96A59 401 aa9.11□□□□□ -0.95
HERC1-211ENST00000560983 HOXB1P14653 301 aaPredicted RBP9.08□□□□□ -0.96
HERC1-211ENST00000560983 HS6ST3Q8IZP7 471 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms