RNA–Protein interactions for RNA: ENST00000560983.1

HERC1-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-211ENST00000560983 AEBP2Q6ZN18 517 aaPredicted RBP20.42■□□□□ 0.86
HERC1-211ENST00000560983 CHIC1Q5VXU3 224 aa19.51■□□□□ 0.71
HERC1-211ENST00000560983 SENP3Q9H4L4 574 aaPredicted RBP17.35■□□□□ 0.37
HERC1-211ENST00000560983 PHF23Q9BUL5 403 aaPredicted RBP17.14■□□□□ 0.33
HERC1-211ENST00000560983 FOXD1Q16676 465 aa16.17■□□□□ 0.18
HERC1-211ENST00000560983 PLPPR3Q6T4P5 718 aa15.61■□□□□ 0.09
HERC1-211ENST00000560983 PPP6R1Q9UPN7 881 aa15.22■□□□□ 0.03
HERC1-211ENST00000560983 ADRA2BP18089 450 aa15.13■□□□□ 0.01
HERC1-211ENST00000560983 PIAS4Q8N2W9 510 aaPredicted RBP15.08■□□□□ 0
HERC1-211ENST00000560983 MSH5O43196 834 aa15.07■□□□□ 0
HERC1-211ENST00000560983 POTEDQ86YR6 584 aa14.49□□□□□ -0.09
HERC1-211ENST00000560983 MAPK8IP2Q13387 824 aaPredicted RBP13.86□□□□□ -0.19
HERC1-211ENST00000560983 SCAF1Q9H7N4 1312 aaKnown RBP13.83□□□□□ -0.2
HERC1-211ENST00000560983 DMRT2Q9Y5R5 561 aa13.81□□□□□ -0.2
HERC1-211ENST00000560983 PPP4R3CPQ6ZMV5 832 aa13.69□□□□□ -0.22
HERC1-211ENST00000560983 CNKSR2Q8WXI2 1034 aa13.42□□□□□ -0.26
HERC1-211ENST00000560983 HOXD11P31277 338 aaPredicted RBP13.39□□□□□ -0.27
HERC1-211ENST00000560983 RNF216Q9NWF9 866 aaPredicted RBP13.29□□□□□ -0.28
HERC1-211ENST00000560983 NCBP3Q53F19 620 aaKnown RBP13.18□□□□□ -0.3
HERC1-211ENST00000560983 DCAF8L1A6NGE4 600 aa13.05□□□□□ -0.32
HERC1-211ENST00000560983 NPM3O75607 178 aaKnown RBP13.04□□□□□ -0.32
HERC1-211ENST00000560983 DNAJC5BQ9UF47 199 aa12.96□□□□□ -0.33
HERC1-211ENST00000560983 RNF39Q9H2S5 420 aa12.9□□□□□ -0.34
HERC1-211ENST00000560983 KCNA4P22459 653 aa12.88□□□□□ -0.35
HERC1-211ENST00000560983 CACNB1Q02641 598 aaPredicted RBP12.78□□□□□ -0.36
HERC1-211ENST00000560983 C1QBPQ07021 282 aaKnown RBP12.7□□□□□ -0.38
HERC1-211ENST00000560983 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.62□□□□□ -0.39
HERC1-211ENST00000560983 U3KPZ7 1027 aaPredicted RBP12.46□□□□□ -0.41
HERC1-211ENST00000560983 SLC4A2P04920 1241 aa12.45□□□□□ -0.42
HERC1-211ENST00000560983 SPINK5Q9NQ38 1064 aaPredicted RBP12.2□□□□□ -0.46
HERC1-211ENST00000560983 SLC4A1APQ9BWU0 796 aaKnown RBP12.15□□□□□ -0.46
HERC1-211ENST00000560983 CAPN15O75808 1086 aa12.11□□□□□ -0.47
HERC1-211ENST00000560983 DSG3P32926 999 aa12.11□□□□□ -0.47
HERC1-211ENST00000560983 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.1□□□□□ -0.47
HERC1-211ENST00000560983 HNRNPUL2Q1KMD3 747 aaKnown RBP12.1□□□□□ -0.47
HERC1-211ENST00000560983 APLP2Q06481 763 aa12.07□□□□□ -0.48
HERC1-211ENST00000560983 SAMD1Q6SPF0 538 aaPredicted RBP12.05□□□□□ -0.48
HERC1-211ENST00000560983 MYCNP04198 464 aaPredicted RBP12.04□□□□□ -0.48
HERC1-211ENST00000560983 FOXD4L1Q9NU39 408 aa11.99□□□□□ -0.49
HERC1-211ENST00000560983 ZNF219Q9P2Y4 722 aaPredicted RBP11.99□□□□□ -0.49
HERC1-211ENST00000560983 TRHP20396 242 aaPredicted RBP11.94□□□□□ -0.5
HERC1-211ENST00000560983 ZBTB22O15209 634 aa11.89□□□□□ -0.51
HERC1-211ENST00000560983 ABCB7O75027 752 aa11.86□□□□□ -0.51
HERC1-211ENST00000560983 ATF5Q9Y2D1 282 aaPredicted RBP11.76□□□□□ -0.53
HERC1-211ENST00000560983 POLA2Q14181 598 aa11.69□□□□□ -0.54
HERC1-211ENST00000560983 ATXN8OSP0DMR3 200 aa11.65□□□□□ -0.54
HERC1-211ENST00000560983 RBM42Q9BTD8 480 aaKnown RBP11.51□□□□□ -0.57
HERC1-211ENST00000560983 ZBTB12Q9Y330 459 aaPredicted RBP11.49□□□□□ -0.57
HERC1-211ENST00000560983 CSRNP3Q8WYN3 585 aa11.44□□□□□ -0.58
HERC1-211ENST00000560983 POTEHQ6S545 545 aa11.36□□□□□ -0.59
HERC1-211ENST00000560983 OSCARQ8IYS5 282 aa11.32□□□□□ -0.6
HERC1-211ENST00000560983 AKT1S1Q96B36 256 aa11.3□□□□□ -0.6
HERC1-211ENST00000560983 MKRN4PQ13434 485 aaPredicted RBP11.26□□□□□ -0.61
HERC1-211ENST00000560983 EHMT2Q96KQ7 1210 aa11.24□□□□□ -0.61
HERC1-211ENST00000560983 FBLN2P98095 1184 aa11.23□□□□□ -0.61
HERC1-211ENST00000560983 CHRDL2Q6WN34 429 aa11.21□□□□□ -0.61
HERC1-211ENST00000560983 REM2Q8IYK8 340 aaPredicted RBP11.18□□□□□ -0.62
HERC1-211ENST00000560983 SPDYE2BA6NHP3 402 aa11.17□□□□□ -0.62
HERC1-211ENST00000560983 SPDYE6P0CI01 402 aa11.17□□□□□ -0.62
HERC1-211ENST00000560983 SPDYE2Q495Y8 402 aa11.17□□□□□ -0.62
HERC1-211ENST00000560983 SSUH2Q9Y2M2 353 aa11.08□□□□□ -0.64
HERC1-211ENST00000560983 PITPNM1O00562 1244 aa11.06□□□□□ -0.64
HERC1-211ENST00000560983 FXR2P51116 673 aaKnown RBP eCLIP10.99□□□□□ -0.65
HERC1-211ENST00000560983 PIP4P2Q8N4L2 257 aa10.99□□□□□ -0.65
HERC1-211ENST00000560983 ZNF692Q9BU19 519 aaPredicted RBP10.99□□□□□ -0.65
HERC1-211ENST00000560983 SPDYE1Q8NFV5 336 aaPredicted RBP10.92□□□□□ -0.66
HERC1-211ENST00000560983 PABPN1Q86U42 306 aaKnown RBP eCLIP10.85□□□□□ -0.67
HERC1-211ENST00000560983 CLEC11AQ9Y240 323 aa10.8□□□□□ -0.68
HERC1-211ENST00000560983 PRKAR2AP13861 404 aaKnown RBP10.74□□□□□ -0.69
HERC1-211ENST00000560983 SPDYE4A6NLX3 237 aa10.72□□□□□ -0.69
HERC1-211ENST00000560983 SP7Q8TDD2 431 aaPredicted RBP10.72□□□□□ -0.69
HERC1-211ENST00000560983 PRR29P0C7W0 189 aa10.68□□□□□ -0.7
HERC1-211ENST00000560983 HAX1O00165 279 aa10.66□□□□□ -0.7
HERC1-211ENST00000560983 EVX2Q03828 476 aa10.64□□□□□ -0.71
HERC1-211ENST00000560983 CHADLQ6NUI6 762 aa10.63□□□□□ -0.71
HERC1-211ENST00000560983 C19orf67A6NJJ6 358 aa10.62□□□□□ -0.71
HERC1-211ENST00000560983 PROM2Q8N271 834 aa10.62□□□□□ -0.71
HERC1-211ENST00000560983 STAG3Q9UJ98 1225 aa10.6□□□□□ -0.71
HERC1-211ENST00000560983 CREBZFQ9NS37 354 aa10.53□□□□□ -0.72
HERC1-211ENST00000560983 FARP1Q9Y4F1 1045 aaPredicted RBP10.53□□□□□ -0.72
HERC1-211ENST00000560983 MNX1P50219 401 aaPredicted RBP10.42□□□□□ -0.74
HERC1-211ENST00000560983 CD44P16070 742 aaKnown RBP10.4□□□□□ -0.74
HERC1-211ENST00000560983 GABBR2O75899 941 aa10.39□□□□□ -0.75
HERC1-211ENST00000560983 CLCN6P51797 869 aa10.32□□□□□ -0.76
HERC1-211ENST00000560983 ZNF579Q8NAF0 562 aaKnown RBP10.32□□□□□ -0.76
HERC1-211ENST00000560983 FKBP8Q14318 412 aa10.29□□□□□ -0.76
HERC1-211ENST00000560983 NPM1P06748 294 aaKnown RBP eCLIP10.28□□□□□ -0.76
HERC1-211ENST00000560983 ZRANB1Q9UGI0 708 aa10.27□□□□□ -0.77
HERC1-211ENST00000560983 POTEIP0CG38 1075 aa10.22□□□□□ -0.77
HERC1-211ENST00000560983 PAK3O75914 559 aaPredicted RBP10.18□□□□□ -0.78
HERC1-211ENST00000560983 MIER1Q8N108 512 aa10.16□□□□□ -0.78
HERC1-211ENST00000560983 PHF12Q96QT6 1004 aa10.15□□□□□ -0.78
HERC1-211ENST00000560983 GALR2O43603 387 aaPredicted RBP10.14□□□□□ -0.79
HERC1-211ENST00000560983 PLEKHG5O94827 1062 aa10.12□□□□□ -0.79
HERC1-211ENST00000560983 CCDC61Q9Y6R9 512 aa10.11□□□□□ -0.79
HERC1-211ENST00000560983 PLCD3Q8N3E9 789 aa10.09□□□□□ -0.79
HERC1-211ENST00000560983 RASEFQ8IZ41 740 aa10.08□□□□□ -0.8
HERC1-211ENST00000560983 DCBLD2Q96PD2 775 aa10.07□□□□□ -0.8
HERC1-211ENST00000560983 NUBP1P53384 320 aa10.06□□□□□ -0.8
HERC1-211ENST00000560983 TSPYL2Q9H2G4 693 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms