RNA–Protein interactions for RNA: ENST00000560731.5

MARK3-222, Transcript of microtubule affinity regulating kinase 3, human

TSL 3

Gene MARK3, Length 432 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-222	ENST00000560731	GABBR2	O75899	941 aa		13.86	□□□□□ -0.19
MARK3-222	ENST00000560731	PAK3	O75914	559 aa	Predicted RBP	13.86	□□□□□ -0.19
MARK3-222	ENST00000560731	ZRANB1	Q9UGI0	708 aa		13.83	□□□□□ -0.2
MARK3-222	ENST00000560731	FBXO3	Q9UK99	471 aa		13.83	□□□□□ -0.2
MARK3-222	ENST00000560731	ZNF579	Q8NAF0	562 aa	Known RBP	13.82	□□□□□ -0.2
MARK3-222	ENST00000560731	PLCD3	Q8N3E9	789 aa		13.8	□□□□□ -0.2
MARK3-222	ENST00000560731	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.77	□□□□□ -0.21
MARK3-222	ENST00000560731	UNC13A	Q9UPW8	1703 aa		13.67	□□□□□ -0.22
MARK3-222	ENST00000560731	SUPT5H	O00267	1087 aa	Known RBP	13.63	□□□□□ -0.23
MARK3-222	ENST00000560731	BICRA	Q9NZM4	1560 aa		13.62	□□□□□ -0.23
MARK3-222	ENST00000560731	PHF12	Q96QT6	1004 aa		13.62	□□□□□ -0.23
MARK3-222	ENST00000560731	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.62	□□□□□ -0.23
MARK3-222	ENST00000560731	DCBLD2	Q96PD2	775 aa		13.59	□□□□□ -0.23
MARK3-222	ENST00000560731	VASP	P50552	380 aa	Predicted RBP	13.57	□□□□□ -0.24
MARK3-222	ENST00000560731	RASEF	Q8IZ41	740 aa		13.57	□□□□□ -0.24
MARK3-222	ENST00000560731	CCDC61	Q9Y6R9	512 aa		13.57	□□□□□ -0.24
MARK3-222	ENST00000560731	GALR2	O43603	387 aa	Predicted RBP	13.56	□□□□□ -0.24
MARK3-222	ENST00000560731	CECR2	Q9BXF3	1484 aa		13.55	□□□□□ -0.24
MARK3-222	ENST00000560731	NUBP1	P53384	320 aa		13.54	□□□□□ -0.24
MARK3-222	ENST00000560731	RSF1	Q96T23	1441 aa	Predicted RBP	13.53	□□□□□ -0.24
MARK3-222	ENST00000560731	POTEI	P0CG38	1075 aa		13.52	□□□□□ -0.25
MARK3-222	ENST00000560731	FAM212A	Q96EL1	285 aa		13.49	□□□□□ -0.25
MARK3-222	ENST00000560731	KLHL34	Q8N239	644 aa		13.47	□□□□□ -0.25
MARK3-222	ENST00000560731	KIF12	Q96FN5	646 aa		13.47	□□□□□ -0.25
MARK3-222	ENST00000560731	MS4A3	Q96HJ5	214 aa		13.46	□□□□□ -0.25
MARK3-222	ENST00000560731	MROH2B	Q7Z745	1585 aa		13.45	□□□□□ -0.26
MARK3-222	ENST00000560731	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.44	□□□□□ -0.26
MARK3-222	ENST00000560731	SGIP1	Q9BQI5	828 aa		13.4	□□□□□ -0.26
MARK3-222	ENST00000560731	MAP3K13	O43283	966 aa		13.39	□□□□□ -0.27
MARK3-222	ENST00000560731	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.39	□□□□□ -0.27
MARK3-222	ENST00000560731	DCAF8	Q5TAQ9	597 aa		13.38	□□□□□ -0.27
MARK3-222	ENST00000560731	SMARCA4	P51532	1647 aa		13.36	□□□□□ -0.27
MARK3-222	ENST00000560731	LHX8	Q68G74	356 aa		13.36	□□□□□ -0.27
MARK3-222	ENST00000560731	ASTL	Q6HA08	431 aa	Predicted RBP	13.35	□□□□□ -0.27
MARK3-222	ENST00000560731	GSE1	Q14687	1217 aa		13.33	□□□□□ -0.28
MARK3-222	ENST00000560731	PCDHB13	Q9Y5F0	798 aa		13.32	□□□□□ -0.28
MARK3-222	ENST00000560731	ATMIN	O43313	823 aa	Predicted RBP	13.31	□□□□□ -0.28
MARK3-222	ENST00000560731	SPOCK2	Q92563	424 aa		13.3	□□□□□ -0.28
MARK3-222	ENST00000560731	WIZ	O95785	1651 aa		13.3	□□□□□ -0.28
MARK3-222	ENST00000560731	TIE1	P35590	1138 aa		13.29	□□□□□ -0.28
MARK3-222	ENST00000560731	SLC24A1	O60721	1099 aa		13.28	□□□□□ -0.28
MARK3-222	ENST00000560731	PELP1	Q8IZL8	1130 aa	Known RBP	13.26	□□□□□ -0.29
MARK3-222	ENST00000560731	SLC39A7	Q92504	469 aa		13.26	□□□□□ -0.29
MARK3-222	ENST00000560731	C7	P10643	843 aa		13.25	□□□□□ -0.29
MARK3-222	ENST00000560731	PEG3	Q9GZU2	1588 aa		13.24	□□□□□ -0.29
MARK3-222	ENST00000560731	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.24	□□□□□ -0.29
MARK3-222	ENST00000560731	PYGB	P11216	843 aa		13.22	□□□□□ -0.29
MARK3-222	ENST00000560731	ATN1	P54259	1190 aa	Predicted RBP	13.22	□□□□□ -0.29
MARK3-222	ENST00000560731	IFNL1	Q8IU54	200 aa		13.22	□□□□□ -0.29
MARK3-222	ENST00000560731	TRPC6	Q9Y210	931 aa		13.21	□□□□□ -0.29
MARK3-222	ENST00000560731	CHRM1	P11229	460 aa	Predicted RBP	13.2	□□□□□ -0.3
MARK3-222	ENST00000560731	ATAD2B	Q9ULI0	1458 aa		13.2	□□□□□ -0.3
MARK3-222	ENST00000560731	METRN	Q9UJH8	293 aa		13.19	□□□□□ -0.3
MARK3-222	ENST00000560731	EIF4G1	Q04637	1599 aa	Known RBP	13.19	□□□□□ -0.3
MARK3-222	ENST00000560731	TOP2A	P11388	1531 aa	Known RBP	13.18	□□□□□ -0.3
MARK3-222	ENST00000560731	TTLL13P	A6NNM8	815 aa		13.18	□□□□□ -0.3
MARK3-222	ENST00000560731	SMARCA2	P51531	1590 aa		13.17	□□□□□ -0.3
MARK3-222	ENST00000560731	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.14	□□□□□ -0.31
MARK3-222	ENST00000560731	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.14	□□□□□ -0.31
MARK3-222	ENST00000560731	NCAPD3	P42695	1498 aa		13.13	□□□□□ -0.31
MARK3-222	ENST00000560731	PKD2	Q13563	968 aa		13.13	□□□□□ -0.31
MARK3-222	ENST00000560731	TMEM106C	Q9BVX2	250 aa		13.11	□□□□□ -0.31
MARK3-222	ENST00000560731	IER5L	Q5T953	404 aa		13.1	□□□□□ -0.31
MARK3-222	ENST00000560731	TRIM41	Q8WV44	630 aa		13.09	□□□□□ -0.31
MARK3-222	ENST00000560731	PCDHB8	Q9UN66	801 aa		13.09	□□□□□ -0.31
MARK3-222	ENST00000560731	TRIM35	Q9UPQ4	493 aa		13.09	□□□□□ -0.31
MARK3-222	ENST00000560731	CCDC88B	A6NC98	1476 aa		13.09	□□□□□ -0.31
MARK3-222	ENST00000560731	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.09	□□□□□ -0.31
MARK3-222	ENST00000560731	POTEB2	H3BUK9	544 aa		13.06	□□□□□ -0.32
MARK3-222	ENST00000560731	HMGXB3	Q12766	1538 aa		13.04	□□□□□ -0.32
MARK3-222	ENST00000560731	SEC24B	O95487	1268 aa		13.04	□□□□□ -0.32
MARK3-222	ENST00000560731	MAMSTR	Q6ZN01	415 aa		13.03	□□□□□ -0.32
MARK3-222	ENST00000560731	OTUD5	Q96G74	571 aa		13	□□□□□ -0.33
MARK3-222	ENST00000560731	CC2D2A	Q9P2K1	1620 aa		12.99	□□□□□ -0.33
MARK3-222	ENST00000560731	POTEF	A5A3E0	1075 aa		12.98	□□□□□ -0.33
MARK3-222	ENST00000560731	PDAP1	Q13442	181 aa	Known RBP	12.97	□□□□□ -0.33
MARK3-222	ENST00000560731	PSEN1	P49768	467 aa		12.96	□□□□□ -0.33
MARK3-222	ENST00000560731	COLQ	Q9Y215	455 aa	Predicted RBP	12.96	□□□□□ -0.33
MARK3-222	ENST00000560731	ECM2	O94769	699 aa	Predicted RBP	12.95	□□□□□ -0.34
MARK3-222	ENST00000560731	POTEJ	P0CG39	1038 aa		12.93	□□□□□ -0.34
MARK3-222	ENST00000560731	PLCG2	P16885	1265 aa		12.93	□□□□□ -0.34
MARK3-222	ENST00000560731	SCUBE2	Q9NQ36	999 aa		12.93	□□□□□ -0.34
MARK3-222	ENST00000560731	GOLGA2	Q08379	1002 aa		12.92	□□□□□ -0.34
MARK3-222	ENST00000560731	IRX5	P78411	483 aa	Predicted RBP	12.9	□□□□□ -0.34
MARK3-222	ENST00000560731	OCEL1	Q9H607	264 aa		12.9	□□□□□ -0.34
MARK3-222	ENST00000560731	MKRN3	Q13064	507 aa	Known RBP	12.88	□□□□□ -0.35
MARK3-222	ENST00000560731	PLCB2	Q00722	1185 aa		12.86	□□□□□ -0.35
MARK3-222	ENST00000560731	RIOK3	O14730	519 aa	Known RBP	12.82	□□□□□ -0.36
MARK3-222	ENST00000560731	RGL2	O15211	777 aa		12.82	□□□□□ -0.36
MARK3-222	ENST00000560731	CFTR	P13569	1480 aa		12.8	□□□□□ -0.36
MARK3-222	ENST00000560731	CADPS	Q9ULU8	1353 aa		12.79	□□□□□ -0.36
MARK3-222	ENST00000560731	CABP2	Q9NPB3	220 aa		12.78	□□□□□ -0.36
MARK3-222	ENST00000560731	TAOK2	Q9UL54	1235 aa		12.78	□□□□□ -0.36
MARK3-222	ENST00000560731	VGF	O15240	615 aa	Predicted RBP	12.77	□□□□□ -0.37
MARK3-222	ENST00000560731	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.77	□□□□□ -0.37	1e-6	■■■□□ 16.5
MARK3-222	ENST00000560731	PDCD7	Q8N8D1	485 aa	Known RBP	12.75	□□□□□ -0.37
MARK3-222	ENST00000560731	RNF25	Q96BH1	459 aa	Predicted RBP	12.75	□□□□□ -0.37
MARK3-222	ENST00000560731	L3MBTL3	Q96JM7	780 aa	Predicted RBP	12.74	□□□□□ -0.37
MARK3-222	ENST00000560731	ILDR1	Q86SU0	546 aa	Predicted RBP	12.73	□□□□□ -0.37
MARK3-222	ENST00000560731	ABCC8	Q09428	1581 aa		12.72	□□□□□ -0.37

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