RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 CANXP27824 592 aaKnown RBP6.77□□□□□ -1.33
SYNE2-223ENST00000557005 NACADO15069 1562 aa6.77□□□□□ -1.33
SYNE2-223ENST00000557005 BAZ1AQ9NRL2 1556 aaPredicted RBP6.77□□□□□ -1.33
SYNE2-223ENST00000557005 ARXQ96QS3 562 aa6.76□□□□□ -1.33
SYNE2-223ENST00000557005 NOP58Q9Y2X3 529 aaKnown RBP6.76□□□□□ -1.33
SYNE2-223ENST00000557005 LAS1LQ9Y4W2 734 aaKnown RBP6.75□□□□□ -1.33
SYNE2-223ENST00000557005 TOP2AP11388 1531 aaKnown RBP6.75□□□□□ -1.33
SYNE2-223ENST00000557005 RUSC2Q8N2Y8 1516 aa6.75□□□□□ -1.33
SYNE2-223ENST00000557005 ZNF777Q9ULD5 760 aaPredicted RBP6.74□□□□□ -1.33
SYNE2-223ENST00000557005 B4GALNT3Q6L9W6 998 aa6.74□□□□□ -1.33
SYNE2-223ENST00000557005 KANK4Q5T7N3 995 aaPredicted RBP6.74□□□□□ -1.33
SYNE2-223ENST00000557005 VPS8Q8N3P4 1428 aa6.73□□□□□ -1.33
SYNE2-223ENST00000557005 RRP7BPQ9NSQ0 103 aa6.73□□□□□ -1.33
SYNE2-223ENST00000557005 PPP4R2Q9NY27 417 aa6.72□□□□□ -1.33
SYNE2-223ENST00000557005 CCNB3Q8WWL7 1395 aa6.71□□□□□ -1.33
SYNE2-223ENST00000557005 BAZ1BQ9UIG0 1483 aaKnown RBP6.71□□□□□ -1.34
SYNE2-223ENST00000557005 DHX57Q6P158 1386 aaKnown RBP6.7□□□□□ -1.34
SYNE2-223ENST00000557005 SETD5Q9C0A6 1442 aa6.69□□□□□ -1.34
SYNE2-223ENST00000557005 RAB3GAP2Q9H2M9 1393 aa6.69□□□□□ -1.34
SYNE2-223ENST00000557005 TMC1Q8TDI8 760 aa6.69□□□□□ -1.34
SYNE2-223ENST00000557005 NEFMP07197 916 aa6.69□□□□□ -1.34
SYNE2-223ENST00000557005 EIF4G2P78344 907 aaKnown RBP eCLIP6.69□□□□□ -1.34
SYNE2-223ENST00000557005 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.68□□□□□ -1.34
SYNE2-223ENST00000557005 RAPGEF2Q9Y4G8 1499 aa6.68□□□□□ -1.34
SYNE2-223ENST00000557005 MTUS2Q5JR59 1369 aa6.68□□□□□ -1.34
SYNE2-223ENST00000557005 KDM2AQ9Y2K7 1162 aa6.68□□□□□ -1.34
SYNE2-223ENST00000557005 CCER2I3L3R5 266 aa6.67□□□□□ -1.34
SYNE2-223ENST00000557005 DDRGK1Q96HY6 314 aa6.67□□□□□ -1.34
SYNE2-223ENST00000557005 SMARCA4P51532 1647 aa6.66□□□□□ -1.34
SYNE2-223ENST00000557005 HSPA5P11021 654 aaKnown RBP6.66□□□□□ -1.34
SYNE2-223ENST00000557005 KIF27Q86VH2 1401 aa6.65□□□□□ -1.35
SYNE2-223ENST00000557005 SMARCA2P51531 1590 aa6.65□□□□□ -1.35
SYNE2-223ENST00000557005 ARHGAP35Q9NRY4 1499 aa6.65□□□□□ -1.35
SYNE2-223ENST00000557005 FBLN2P98095 1184 aa6.64□□□□□ -1.35
SYNE2-223ENST00000557005 KIF21BO75037 1637 aa6.63□□□□□ -1.35
SYNE2-223ENST00000557005 EIF4G1Q04637 1599 aaKnown RBP6.62□□□□□ -1.35
SYNE2-223ENST00000557005 WDR43Q15061 677 aaKnown RBP eCLIP6.62□□□□□ -1.35
SYNE2-223ENST00000557005 FOXD1Q16676 465 aa6.62□□□□□ -1.35
SYNE2-223ENST00000557005 GLIPR1L2Q4G1C9 344 aa6.61□□□□□ -1.35
SYNE2-223ENST00000557005 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.6□□□□□ -1.35
SYNE2-223ENST00000557005 UPF2Q9HAU5 1272 aaKnown RBP6.6□□□□□ -1.35
SYNE2-223ENST00000557005 CC2D1BQ5T0F9 858 aaKnown RBP6.59□□□□□ -1.35
SYNE2-223ENST00000557005 CUX2O14529 1486 aa6.59□□□□□ -1.35
SYNE2-223ENST00000557005 PPM1GO15355 546 aaPredicted RBP6.59□□□□□ -1.35
SYNE2-223ENST00000557005 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.58□□□□□ -1.36
SYNE2-223ENST00000557005 NAP1L5Q96NT1 182 aaPredicted RBP6.58□□□□□ -1.36
SYNE2-223ENST00000557005 HSP90AA1P07900 732 aaKnown RBP6.58□□□□□ -1.36
SYNE2-223ENST00000557005 IPO9Q96P70 1041 aaKnown RBP6.58□□□□□ -1.36
SYNE2-223ENST00000557005 SYNJ1O43426 1573 aa6.57□□□□□ -1.36
SYNE2-223ENST00000557005 RGS3P49796 1198 aa6.57□□□□□ -1.36
SYNE2-223ENST00000557005 SPRYD3Q8NCJ5 442 aa6.57□□□□□ -1.36
SYNE2-223ENST00000557005 ANP32BQ92688 251 aaKnown RBP6.56□□□□□ -1.36
SYNE2-223ENST00000557005 CARD11Q9BXL7 1154 aa6.56□□□□□ -1.36
SYNE2-223ENST00000557005 FANCIQ9NVI1 1328 aa6.56□□□□□ -1.36
SYNE2-223ENST00000557005 BECN1Q14457 450 aa6.56□□□□□ -1.36
SYNE2-223ENST00000557005 FHAD1B1AJZ9 1412 aa6.55□□□□□ -1.36
SYNE2-223ENST00000557005 PPP1R15AO75807 674 aaPredicted RBP6.55□□□□□ -1.36
SYNE2-223ENST00000557005 ARAP1Q96P48 1450 aa6.55□□□□□ -1.36
SYNE2-223ENST00000557005 CARMIL1Q5VZK9 1371 aa6.55□□□□□ -1.36
SYNE2-223ENST00000557005 FHOD3Q2V2M9 1422 aa6.54□□□□□ -1.36
SYNE2-223ENST00000557005 WDR97A6NE52 1622 aa6.53□□□□□ -1.36
SYNE2-223ENST00000557005 SENP3Q9H4L4 574 aaPredicted RBP6.53□□□□□ -1.36
SYNE2-223ENST00000557005 MSH5O43196 834 aa6.53□□□□□ -1.36
SYNE2-223ENST00000557005 SLC24A1O60721 1099 aa6.52□□□□□ -1.36
SYNE2-223ENST00000557005 RGL3Q3MIN7 710 aa6.52□□□□□ -1.36
SYNE2-223ENST00000557005 NUDCQ9Y266 331 aa6.52□□□□□ -1.36
SYNE2-223ENST00000557005 CCDC18Q5T9S5 1454 aa6.52□□□□□ -1.37
SYNE2-223ENST00000557005 SLC4A3P48751 1232 aa6.52□□□□□ -1.37
SYNE2-223ENST00000557005 ERICH6BQ5W0A0 696 aa6.52□□□□□ -1.37
SYNE2-223ENST00000557005 ARID4BQ4LE39 1312 aaPredicted RBP6.51□□□□□ -1.37
SYNE2-223ENST00000557005 CHGAP10645 457 aaKnown RBP6.51□□□□□ -1.37
SYNE2-223ENST00000557005 TIMELESSQ9UNS1 1208 aa6.51□□□□□ -1.37
SYNE2-223ENST00000557005 NCLP19338 710 aaKnown RBP6.51□□□□□ -1.37
SYNE2-223ENST00000557005 TRIM44Q96DX7 344 aaPredicted RBP6.51□□□□□ -1.37
SYNE2-223ENST00000557005 TPRNQ4KMQ1 711 aa6.5□□□□□ -1.37
SYNE2-223ENST00000557005 MPHOSPH9Q99550 1183 aa6.5□□□□□ -1.37
SYNE2-223ENST00000557005 RCAN3Q9UKA8 241 aa6.5□□□□□ -1.37
SYNE2-223ENST00000557005 FRAT1Q92837 279 aaPredicted RBP6.49□□□□□ -1.37
SYNE2-223ENST00000557005 RRBP1Q9P2E9 1410 aaKnown RBP6.49□□□□□ -1.37
SYNE2-223ENST00000557005 EXOC6Q8TAG9 804 aa6.49□□□□□ -1.37
SYNE2-223ENST00000557005 ANO8Q9HCE9 1232 aaPredicted RBP6.49□□□□□ -1.37
SYNE2-223ENST00000557005 PLIN1O60240 522 aa6.48□□□□□ -1.37
SYNE2-223ENST00000557005 TCERG1O14776 1098 aaKnown RBP6.48□□□□□ -1.37
SYNE2-223ENST00000557005 FMN1Q68DA7 1419 aa6.48□□□□□ -1.37
SYNE2-223ENST00000557005 NEUROD2Q15784 382 aa6.48□□□□□ -1.37
SYNE2-223ENST00000557005 KTN1Q86UP2 1357 aaKnown RBP6.48□□□□□ -1.37
SYNE2-223ENST00000557005 DCAF11Q8TEB1 546 aa6.48□□□□□ -1.37
SYNE2-223ENST00000557005 PHLDB1Q86UU1 1377 aa6.48□□□□□ -1.37
SYNE2-223ENST00000557005 GZF1Q9H116 711 aaPredicted RBP6.47□□□□□ -1.37
SYNE2-223ENST00000557005 KNSTRNQ9Y448 316 aa6.47□□□□□ -1.37
SYNE2-223ENST00000557005 CNTLNQ9NXG0 1405 aa6.47□□□□□ -1.37
SYNE2-223ENST00000557005 ZBED9Q6R2W3 1325 aa6.47□□□□□ -1.37
SYNE2-223ENST00000557005 ZBTB7CA1YPR0 619 aa6.47□□□□□ -1.37
SYNE2-223ENST00000557005 LRRC9Q6ZRR7 1453 aa6.47□□□□□ -1.37
SYNE2-223ENST00000557005 ROCK2O75116 1388 aaKnown RBP6.47□□□□□ -1.37
SYNE2-223ENST00000557005 L3MBTL2Q969R5 705 aa6.47□□□□□ -1.37
SYNE2-223ENST00000557005 TNNT2P45379 298 aaPredicted RBP6.47□□□□□ -1.37
SYNE2-223ENST00000557005 PAK3O75914 559 aaPredicted RBP6.46□□□□□ -1.38
SYNE2-223ENST00000557005 PDE4AP27815 886 aa6.46□□□□□ -1.38
SYNE2-223ENST00000557005 CFDP1Q9UEE9 299 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms