RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 NISCHQ9Y2I1 1504 aa8.71□□□□□ -1.01
SYNE2-223ENST00000557005 SHROOM4Q9ULL8 1493 aa8.36□□□□□ -1.07
SYNE2-223ENST00000557005 SUPT5HO00267 1087 aaKnown RBP8.34□□□□□ -1.07
SYNE2-223ENST00000557005 DCAF8L2P0C7V8 631 aa8.32□□□□□ -1.08
SYNE2-223ENST00000557005 EHMT2Q96KQ7 1210 aa8.09□□□□□ -1.11
SYNE2-223ENST00000557005 PCGF6Q9BYE7 350 aa8.09□□□□□ -1.12
SYNE2-223ENST00000557005 HRCP23327 699 aa7.9□□□□□ -1.15
SYNE2-223ENST00000557005 PPARGC1BQ86YN6 1023 aaKnown RBP7.89□□□□□ -1.15
SYNE2-223ENST00000557005 TTBK1Q5TCY1 1321 aaPredicted RBP7.85□□□□□ -1.15
SYNE2-223ENST00000557005 FAM9AQ8IZU1 332 aaPredicted RBP7.84□□□□□ -1.15
SYNE2-223ENST00000557005 PELP1Q8IZL8 1130 aaKnown RBP7.79□□□□□ -1.16
SYNE2-223ENST00000557005 ZEB1P37275 1124 aaPredicted RBP7.76□□□□□ -1.17
SYNE2-223ENST00000557005 YTHDC1Q96MU7 727 aaKnown RBP7.73□□□□□ -1.17
SYNE2-223ENST00000557005 LOC105371045A0A1W2PR82 267 aa7.71□□□□□ -1.18
SYNE2-223ENST00000557005 CCER1Q8TC90 406 aaPredicted RBP7.7□□□□□ -1.18
SYNE2-223ENST00000557005 TRIM26Q12899 539 aaPredicted RBP7.7□□□□□ -1.18
SYNE2-223ENST00000557005 CENPBP07199 599 aaPredicted RBP7.7□□□□□ -1.18
SYNE2-223ENST00000557005 CHIC1Q5VXU3 224 aa7.67□□□□□ -1.18
SYNE2-223ENST00000557005 TRIM41Q8WV44 630 aa7.66□□□□□ -1.18
SYNE2-223ENST00000557005 MYT1Q01538 1121 aa7.59□□□□□ -1.19
SYNE2-223ENST00000557005 RANGAP1P46060 587 aaPredicted RBP7.58□□□□□ -1.2
SYNE2-223ENST00000557005 MYO15BQ96JP2 1530 aa7.56□□□□□ -1.2
SYNE2-223ENST00000557005 APLP2Q06481 763 aa7.55□□□□□ -1.2
SYNE2-223ENST00000557005 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.51□□□□□ -1.21
SYNE2-223ENST00000557005 ERICH6Q7L0X2 663 aa7.49□□□□□ -1.21
SYNE2-223ENST00000557005 GTF3C3Q9Y5Q9 886 aa7.48□□□□□ -1.21
SYNE2-223ENST00000557005 DIEXFQ68CQ4 756 aaKnown RBP7.46□□□□□ -1.21
SYNE2-223ENST00000557005 UBTFP17480 764 aaKnown RBP7.45□□□□□ -1.22
SYNE2-223ENST00000557005 SCAF1Q9H7N4 1312 aaKnown RBP7.43□□□□□ -1.22
SYNE2-223ENST00000557005 DCAF1Q9Y4B6 1507 aa7.42□□□□□ -1.22
SYNE2-223ENST00000557005 ACIN1Q9UKV3 1341 aaKnown RBP7.4□□□□□ -1.23
SYNE2-223ENST00000557005 HNRNPUL2Q1KMD3 747 aaKnown RBP7.38□□□□□ -1.23
SYNE2-223ENST00000557005 CCDC180Q9P1Z9 1646 aa7.38□□□□□ -1.23
SYNE2-223ENST00000557005 NEFLP07196 543 aa7.35□□□□□ -1.23
SYNE2-223ENST00000557005 ZCCHC6Q5VYS8 1495 aaKnown RBP7.33□□□□□ -1.24
SYNE2-223ENST00000557005 ATP1B4Q9UN42 357 aaPredicted RBP7.33□□□□□ -1.24
SYNE2-223ENST00000557005 BCANQ96GW7 911 aa7.31□□□□□ -1.24
SYNE2-223ENST00000557005 NEUROD1Q13562 356 aa7.31□□□□□ -1.24
SYNE2-223ENST00000557005 ITGAEP38570 1179 aa7.3□□□□□ -1.24
SYNE2-223ENST00000557005 SCRIBQ14160 1630 aa7.28□□□□□ -1.24
SYNE2-223ENST00000557005 ZNF316A6NFI3 1004 aaPredicted RBP7.27□□□□□ -1.25
SYNE2-223ENST00000557005 CNGB1Q14028 1251 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-223ENST00000557005 MIER1Q8N108 512 aa7.13□□□□□ -1.27
SYNE2-223ENST00000557005 POLR3GLQ9BT43 218 aa7.13□□□□□ -1.27
SYNE2-223ENST00000557005 FAM50AQ14320 339 aaKnown RBP7.11□□□□□ -1.27
SYNE2-223ENST00000557005 ABCC9O60706 1549 aa7.1□□□□□ -1.27
SYNE2-223ENST00000557005 FKBP8Q14318 412 aa7.09□□□□□ -1.27
SYNE2-223ENST00000557005 CDK11AQ9UQ88 783 aaPredicted RBP7.07□□□□□ -1.28
SYNE2-223ENST00000557005 ANP32CO43423 234 aa7.06□□□□□ -1.28
SYNE2-223ENST00000557005 RTL5Q5HYW3 569 aaPredicted RBP7.05□□□□□ -1.28
SYNE2-223ENST00000557005 RB1CC1Q8TDY2 1594 aa7.04□□□□□ -1.28
SYNE2-223ENST00000557005 DAXXQ9UER7 740 aaPredicted RBP7.03□□□□□ -1.28
SYNE2-223ENST00000557005 PABPN1Q86U42 306 aaKnown RBP eCLIP7.02□□□□□ -1.29
SYNE2-223ENST00000557005 RSF1Q96T23 1441 aaPredicted RBP7.02□□□□□ -1.29
SYNE2-223ENST00000557005 CEP162Q5TB80 1403 aa7.01□□□□□ -1.29
SYNE2-223ENST00000557005 CSRNP3Q8WYN3 585 aa7□□□□□ -1.29
SYNE2-223ENST00000557005 ANP32EQ9BTT0 268 aa7□□□□□ -1.29
SYNE2-223ENST00000557005 CLSPNQ9HAW4 1339 aa6.99□□□□□ -1.29
SYNE2-223ENST00000557005 IRX6P78412 446 aaPredicted RBP6.99□□□□□ -1.29
SYNE2-223ENST00000557005 SUPT16HQ9Y5B9 1047 aaKnown RBP6.99□□□□□ -1.29
SYNE2-223ENST00000557005 TRIM52Q96A61 297 aa6.98□□□□□ -1.29
SYNE2-223ENST00000557005 DDX10Q13206 875 aaKnown RBP6.97□□□□□ -1.29
SYNE2-223ENST00000557005 NBR1Q14596 966 aa6.97□□□□□ -1.29
SYNE2-223ENST00000557005 NPM2Q86SE8 214 aaKnown RBP6.96□□□□□ -1.29
SYNE2-223ENST00000557005 HIRIP3Q9BW71 556 aaPredicted RBP6.95□□□□□ -1.3
SYNE2-223ENST00000557005 P3H3Q8IVL6 736 aa6.95□□□□□ -1.3
SYNE2-223ENST00000557005 GOLGA3Q08378 1498 aa6.94□□□□□ -1.3
SYNE2-223ENST00000557005 ABCC8Q09428 1581 aa6.93□□□□□ -1.3
SYNE2-223ENST00000557005 BCL11AQ9H165 835 aa6.93□□□□□ -1.3
SYNE2-223ENST00000557005 ZNF326Q5BKZ1 582 aaKnown RBP6.92□□□□□ -1.3
SYNE2-223ENST00000557005 CLIP1P30622 1438 aa6.92□□□□□ -1.3
SYNE2-223ENST00000557005 HNRNPUQ00839 825 aaKnown RBP eCLIP6.91□□□□□ -1.3
SYNE2-223ENST00000557005 ANP32AP39687 249 aaKnown RBP6.91□□□□□ -1.3
SYNE2-223ENST00000557005 WIZO95785 1651 aa6.89□□□□□ -1.31
SYNE2-223ENST00000557005 FAM9BQ8IZU0 186 aa6.89□□□□□ -1.31
SYNE2-223ENST00000557005 SOGA1O94964 1423 aa6.88□□□□□ -1.31
SYNE2-223ENST00000557005 TNIKQ9UKE5 1360 aa6.88□□□□□ -1.31
SYNE2-223ENST00000557005 ARID3CA6NKF2 412 aa6.87□□□□□ -1.31
SYNE2-223ENST00000557005 TONSLQ96HA7 1378 aa6.86□□□□□ -1.31
SYNE2-223ENST00000557005 CECR2Q9BXF3 1484 aa6.86□□□□□ -1.31
SYNE2-223ENST00000557005 TSHZ2Q9NRE2 1034 aa6.86□□□□□ -1.31
SYNE2-223ENST00000557005 MROH2BQ7Z745 1585 aa6.84□□□□□ -1.31
SYNE2-223ENST00000557005 CCDC88BA6NC98 1476 aa6.84□□□□□ -1.32
SYNE2-223ENST00000557005 SENP3-EIF4A1A0A087X0R7 540 aa6.83□□□□□ -1.32
SYNE2-223ENST00000557005 SLC4A1APQ9BWU0 796 aaKnown RBP6.82□□□□□ -1.32
SYNE2-223ENST00000557005 CEP164Q9UPV0 1460 aa6.82□□□□□ -1.32
SYNE2-223ENST00000557005 EIF5BO60841 1220 aaKnown RBP6.82□□□□□ -1.32
SYNE2-223ENST00000557005 RBM19Q9Y4C8 960 aaKnown RBP6.81□□□□□ -1.32
SYNE2-223ENST00000557005 RTN4Q9NQC3 1192 aaKnown RBP6.81□□□□□ -1.32
SYNE2-223ENST00000557005 ZBTB47Q9UFB7 747 aaPredicted RBP6.81□□□□□ -1.32
SYNE2-223ENST00000557005 SIN3AQ96ST3 1273 aa6.8□□□□□ -1.32
SYNE2-223ENST00000557005 SALL2Q9Y467 1007 aaPredicted RBP6.8□□□□□ -1.32
SYNE2-223ENST00000557005 WRNQ14191 1432 aaPredicted RBP eCLIP6.8□□□□□ -1.32
SYNE2-223ENST00000557005 EEA1Q15075 1411 aa6.8□□□□□ -1.32
SYNE2-223ENST00000557005 CHIC2Q9UKJ5 165 aa6.79□□□□□ -1.32
SYNE2-223ENST00000557005 MYT1LQ9UL68 1186 aa6.79□□□□□ -1.32
SYNE2-223ENST00000557005 CCDC136Q96JN2 1154 aa6.79□□□□□ -1.32
SYNE2-223ENST00000557005 KCNH8Q96L42 1107 aa6.79□□□□□ -1.32
SYNE2-223ENST00000557005 MRS2Q9HD23 443 aa6.77□□□□□ -1.32
SYNE2-223ENST00000557005 DEKP35659 375 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms