RNA–Protein interactions for RNA: ENST00000550987.5

CPSF6-206, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-206ENST00000550987 HS6ST3Q8IZP7 471 aa11.36□□□□□ -0.59
CPSF6-206ENST00000550987 CLEC11AQ9Y240 323 aa11.36□□□□□ -0.59
CPSF6-206ENST00000550987 PRR29P0C7W0 189 aa11.34□□□□□ -0.59
CPSF6-206ENST00000550987 TPRNQ4KMQ1 711 aa11.34□□□□□ -0.59
CPSF6-206ENST00000550987 RBM42Q9BTD8 480 aaKnown RBP11.33□□□□□ -0.6
CPSF6-206ENST00000550987 NUBP1P53384 320 aa11.32□□□□□ -0.6
CPSF6-206ENST00000550987 FAM212AQ96EL1 285 aa11.31□□□□□ -0.6
CPSF6-206ENST00000550987 RIOK3O14730 519 aaKnown RBP11.3□□□□□ -0.6
CPSF6-206ENST00000550987 AKT1S1Q96B36 256 aa11.3□□□□□ -0.6
CPSF6-206ENST00000550987 RNF25Q96BH1 459 aaPredicted RBP11.28□□□□□ -0.6
CPSF6-206ENST00000550987 NBR1Q14596 966 aa11.27□□□□□ -0.61
CPSF6-206ENST00000550987 STK25O00506 426 aa11.24□□□□□ -0.61
CPSF6-206ENST00000550987 CREBZFQ9NS37 354 aa11.23□□□□□ -0.61
CPSF6-206ENST00000550987 VGFO15240 615 aaPredicted RBP11.21□□□□□ -0.61
CPSF6-206ENST00000550987 REM2Q8IYK8 340 aaPredicted RBP11.19□□□□□ -0.62
CPSF6-206ENST00000550987 CHRM1P11229 460 aaPredicted RBP11.17□□□□□ -0.62
CPSF6-206ENST00000550987 NKX1-1Q15270 411 aaPredicted RBP11.16□□□□□ -0.62
CPSF6-206ENST00000550987 GTPBP6O43824 516 aaPredicted RBP11.15□□□□□ -0.62
CPSF6-206ENST00000550987 STK24Q9Y6E0 443 aa11.15□□□□□ -0.62
CPSF6-206ENST00000550987 MNX1P50219 401 aaPredicted RBP11.14□□□□□ -0.63
CPSF6-206ENST00000550987 RASEFQ8IZ41 740 aa11.14□□□□□ -0.63
CPSF6-206ENST00000550987 RYDENQ9NUL5 291 aaKnown RBP11.14□□□□□ -0.63
CPSF6-206ENST00000550987 PYGBP11216 843 aa11.12□□□□□ -0.63
CPSF6-206ENST00000550987 BCL11BQ9C0K0 894 aaPredicted RBP11.12□□□□□ -0.63
CPSF6-206ENST00000550987 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.1□□□□□ -0.63
CPSF6-206ENST00000550987 ZFP91Q96JP5 570 aaPredicted RBP11.1□□□□□ -0.63
CPSF6-206ENST00000550987 SGIP1Q9BQI5 828 aa11.08□□□□□ -0.64
CPSF6-206ENST00000550987 PITPNM1O00562 1244 aa11.03□□□□□ -0.64
CPSF6-206ENST00000550987 TSPYL2Q9H2G4 693 aaPredicted RBP11□□□□□ -0.65
CPSF6-206ENST00000550987 ILDR1Q86SU0 546 aaPredicted RBP10.99□□□□□ -0.65
CPSF6-206ENST00000550987 ZNF467Q7Z7K2 595 aaPredicted RBP10.98□□□□□ -0.65
CPSF6-206ENST00000550987 WDR70Q9NW82 654 aa10.97□□□□□ -0.65
CPSF6-206ENST00000550987 CHADLQ6NUI6 762 aa10.95□□□□□ -0.66
CPSF6-206ENST00000550987 PDAP1Q13442 181 aaKnown RBP10.92□□□□□ -0.66
CPSF6-206ENST00000550987 P3H3Q8IVL6 736 aa10.92□□□□□ -0.66
CPSF6-206ENST00000550987 FARP1Q9Y4F1 1045 aaPredicted RBP10.9□□□□□ -0.66
CPSF6-206ENST00000550987 PCDHB8Q9UN66 801 aa10.89□□□□□ -0.67
CPSF6-206ENST00000550987 PCDHB13Q9Y5F0 798 aa10.89□□□□□ -0.67
CPSF6-206ENST00000550987 PSEN1P49768 467 aa10.84□□□□□ -0.67
CPSF6-206ENST00000550987 PAK3O75914 559 aaPredicted RBP10.83□□□□□ -0.68
CPSF6-206ENST00000550987 PRKAR2AP13861 404 aaKnown RBP10.82□□□□□ -0.68
CPSF6-206ENST00000550987 ZNF579Q8NAF0 562 aaKnown RBP10.81□□□□□ -0.68
CPSF6-206ENST00000550987 CADPS2Q86UW7 1296 aa10.79□□□□□ -0.68
CPSF6-206ENST00000550987 CCDC61Q9Y6R9 512 aa10.78□□□□□ -0.68
CPSF6-206ENST00000550987 TULP1O00294 542 aaPredicted RBP10.77□□□□□ -0.69
CPSF6-206ENST00000550987 MFRPQ9BY79 579 aa10.76□□□□□ -0.69
CPSF6-206ENST00000550987 KCNV2Q8TDN2 545 aa10.75□□□□□ -0.69
CPSF6-206ENST00000550987 NLRP6P59044 892 aa10.73□□□□□ -0.69
CPSF6-206ENST00000550987 CABP2Q9NPB3 220 aa10.72□□□□□ -0.69
CPSF6-206ENST00000550987 SOX12O15370 315 aa10.71□□□□□ -0.69
CPSF6-206ENST00000550987 LMOD2Q6P5Q4 547 aa10.71□□□□□ -0.69
CPSF6-206ENST00000550987 IFNL1Q8IU54 200 aa10.71□□□□□ -0.69
CPSF6-206ENST00000550987 EFCAB3Q8N7B9 438 aa10.71□□□□□ -0.69
CPSF6-206ENST00000550987 MAP3K13O43283 966 aa10.69□□□□□ -0.7
CPSF6-206ENST00000550987 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.69□□□□□ -0.7
CPSF6-206ENST00000550987 FXR2P51116 673 aaKnown RBP eCLIP10.68□□□□□ -0.7
CPSF6-206ENST00000550987 GTF3C3Q9Y5Q9 886 aa10.68□□□□□ -0.7
CPSF6-206ENST00000550987 PPP1R37O75864 691 aa10.67□□□□□ -0.7
CPSF6-206ENST00000550987 E2F4Q16254 413 aa10.66□□□□□ -0.7
CPSF6-206ENST00000550987 ARHGEF1Q92888 912 aaKnown RBP10.66□□□□□ -0.7
CPSF6-206ENST00000550987 KIF12Q96FN5 646 aa10.66□□□□□ -0.7
CPSF6-206ENST00000550987 PHF8Q9UPP1 1060 aa10.66□□□□□ -0.7
CPSF6-206ENST00000550987 GOLGA2Q08379 1002 aa10.63□□□□□ -0.71
CPSF6-206ENST00000550987 FBXO22Q8NEZ5 403 aa10.63□□□□□ -0.71
CPSF6-206ENST00000550987 TMEM132AQ24JP5 1023 aa10.62□□□□□ -0.71
CPSF6-206ENST00000550987 ZRANB1Q9UGI0 708 aa10.61□□□□□ -0.71
CPSF6-206ENST00000550987 PDE4AP27815 886 aa10.6□□□□□ -0.71
CPSF6-206ENST00000550987 ERICH6Q7L0X2 663 aa10.59□□□□□ -0.71
CPSF6-206ENST00000550987 CUX2O14529 1486 aa10.58□□□□□ -0.72
CPSF6-206ENST00000550987 CHRDL2Q6WN34 429 aa10.58□□□□□ -0.72
CPSF6-206ENST00000550987 LARP6Q9BRS8 491 aaKnown RBP10.58□□□□□ -0.72
CPSF6-206ENST00000550987 PIP4P2Q8N4L2 257 aa10.57□□□□□ -0.72
CPSF6-206ENST00000550987 SMYD5Q6GMV2 418 aa10.56□□□□□ -0.72
CPSF6-206ENST00000550987 SEMA3EO15041 775 aa10.55□□□□□ -0.72
CPSF6-206ENST00000550987 CD44P16070 742 aaKnown RBP10.55□□□□□ -0.72
CPSF6-206ENST00000550987 TIMELESSQ9UNS1 1208 aa10.54□□□□□ -0.72
CPSF6-206ENST00000550987 MKRN3Q13064 507 aaKnown RBP10.52□□□□□ -0.73
CPSF6-206ENST00000550987 ZC3H15Q8WU90 426 aaKnown RBP10.52□□□□□ -0.73
CPSF6-206ENST00000550987 PHF12Q96QT6 1004 aa10.52□□□□□ -0.73
CPSF6-206ENST00000550987 TMEM106CQ9BVX2 250 aa10.52□□□□□ -0.73
CPSF6-206ENST00000550987 TESPA1A2RU30 521 aaPredicted RBP10.51□□□□□ -0.73
CPSF6-206ENST00000550987 NISCHQ9Y2I1 1504 aa10.5□□□□□ -0.73
CPSF6-206ENST00000550987 DDX27Q96GQ7 796 aaKnown RBP10.5□□□□□ -0.73
CPSF6-206ENST00000550987 NCKAP5LQ9HCH0 1330 aa10.5□□□□□ -0.73
CPSF6-206ENST00000550987 CECR2Q9BXF3 1484 aa10.49□□□□□ -0.73
CPSF6-206ENST00000550987 MS4A4AQ96JQ5 239 aa10.47□□□□□ -0.73
CPSF6-206ENST00000550987 NEUROD2Q15784 382 aa10.46□□□□□ -0.73
CPSF6-206ENST00000550987 BRPF1P55201 1214 aaPredicted RBP10.45□□□□□ -0.74
CPSF6-206ENST00000550987 SLC24A3Q9HC58 644 aa10.45□□□□□ -0.74
CPSF6-206ENST00000550987 MFSD10Q14728 455 aa10.44□□□□□ -0.74
CPSF6-206ENST00000550987 CRISPLD2Q9H0B8 497 aa10.44□□□□□ -0.74
CPSF6-206ENST00000550987 C14orf37Q86TY3 774 aa10.42□□□□□ -0.74
CPSF6-206ENST00000550987 MS4A3Q96HJ5 214 aa10.4□□□□□ -0.74
CPSF6-206ENST00000550987 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.39□□□□□ -0.753e-11■■■■□ 24.1
CPSF6-206ENST00000550987 ARIH1Q9Y4X5 557 aaPredicted RBP10.39□□□□□ -0.75
CPSF6-206ENST00000550987 ZMYND10O75800 440 aa10.37□□□□□ -0.75
CPSF6-206ENST00000550987 KRI1Q8N9T8 703 aaKnown RBP10.37□□□□□ -0.75
CPSF6-206ENST00000550987 TRPC6Q9Y210 931 aa10.37□□□□□ -0.75
CPSF6-206ENST00000550987 CAMK2BQ13554 666 aa10.36□□□□□ -0.75
CPSF6-206ENST00000550987 PPP1R15BQ5SWA1 713 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms