RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.54□□□□□ -0.72
VPS13D-211ENST00000543710 MLECQ14165 292 aa10.52□□□□□ -0.73
VPS13D-211ENST00000543710 CANXP27824 592 aaKnown RBP10.51□□□□□ -0.73
VPS13D-211ENST00000543710 GLIPR1L2Q4G1C9 344 aa10.51□□□□□ -0.73
VPS13D-211ENST00000543710 CCDC9Q9Y3X0 531 aaKnown RBP10.51□□□□□ -0.73
VPS13D-211ENST00000543710 ANP32EQ9BTT0 268 aa10.51□□□□□ -0.73
VPS13D-211ENST00000543710 PPARGC1BQ86YN6 1023 aaKnown RBP10.5□□□□□ -0.73
VPS13D-211ENST00000543710 ZNF326Q5BKZ1 582 aaKnown RBP10.5□□□□□ -0.73
VPS13D-211ENST00000543710 UPF2Q9HAU5 1272 aaKnown RBP10.5□□□□□ -0.73
VPS13D-211ENST00000543710 GTF3C3Q9Y5Q9 886 aa10.49□□□□□ -0.73
VPS13D-211ENST00000543710 BAZ1BQ9UIG0 1483 aaKnown RBP10.49□□□□□ -0.73
VPS13D-211ENST00000543710 TMX4Q9H1E5 349 aaPredicted RBP10.49□□□□□ -0.73
VPS13D-211ENST00000543710 ZBTB7CA1YPR0 619 aa10.48□□□□□ -0.73
VPS13D-211ENST00000543710 LMOD2Q6P5Q4 547 aa10.48□□□□□ -0.73
VPS13D-211ENST00000543710 P3H3Q8IVL6 736 aa10.48□□□□□ -0.73
VPS13D-211ENST00000543710 DDRGK1Q96HY6 314 aa10.48□□□□□ -0.73
VPS13D-211ENST00000543710 TNIKQ9UKE5 1360 aa10.46□□□□□ -0.73
VPS13D-211ENST00000543710 EID1Q9Y6B2 187 aa10.46□□□□□ -0.74
VPS13D-211ENST00000543710 NEUROD1Q13562 356 aa10.45□□□□□ -0.74
VPS13D-211ENST00000543710 CARMIL2Q6F5E8 1435 aa10.44□□□□□ -0.74
VPS13D-211ENST00000543710 CLIP1P30622 1438 aa10.44□□□□□ -0.74
VPS13D-211ENST00000543710 SMARCA2P51531 1590 aa10.42□□□□□ -0.74
VPS13D-211ENST00000543710 EIF4G2P78344 907 aaKnown RBP eCLIP10.42□□□□□ -0.74
VPS13D-211ENST00000543710 DMRT2Q9Y5R5 561 aa10.41□□□□□ -0.74
VPS13D-211ENST00000543710 FHAD1B1AJZ9 1412 aa10.4□□□□□ -0.74
VPS13D-211ENST00000543710 KIF27Q86VH2 1401 aa10.4□□□□□ -0.74
VPS13D-211ENST00000543710 HMGB2P26583 209 aaKnown RBP10.4□□□□□ -0.74
VPS13D-211ENST00000543710 TIMELESSQ9UNS1 1208 aa10.4□□□□□ -0.75
VPS13D-211ENST00000543710 PLEKHG5O94827 1062 aa10.39□□□□□ -0.75
VPS13D-211ENST00000543710 CEP162Q5TB80 1403 aa10.37□□□□□ -0.75
VPS13D-211ENST00000543710 CDCA8Q53HL2 280 aa10.36□□□□□ -0.75
VPS13D-211ENST00000543710 WRNQ14191 1432 aaPredicted RBP eCLIP10.36□□□□□ -0.75
VPS13D-211ENST00000543710 FAM69CQ0P6D2 419 aa10.35□□□□□ -0.75
VPS13D-211ENST00000543710 KANK1Q14678 1352 aa10.35□□□□□ -0.75
VPS13D-211ENST00000543710 CHMP4BQ9H444 224 aaKnown RBP10.35□□□□□ -0.75
VPS13D-211ENST00000543710 CFAP44Q96MT7 982 aa10.34□□□□□ -0.75
VPS13D-211ENST00000543710 TOP2AP11388 1531 aaKnown RBP10.34□□□□□ -0.75
VPS13D-211ENST00000543710 BECN1Q14457 450 aa10.33□□□□□ -0.76
VPS13D-211ENST00000543710 MTUS2Q5JR59 1369 aa10.33□□□□□ -0.76
VPS13D-211ENST00000543710 ERICH6BQ5W0A0 696 aa10.3□□□□□ -0.76
VPS13D-211ENST00000543710 PTMSP20962 102 aa10.29□□□□□ -0.76
VPS13D-211ENST00000543710 WDR43Q15061 677 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS13D-211ENST00000543710 ARXQ96QS3 562 aa10.29□□□□□ -0.76
VPS13D-211ENST00000543710 MS4A1P11836 297 aa10.28□□□□□ -0.76
VPS13D-211ENST00000543710 MYH16Q9H6N6 1097 aa10.28□□□□□ -0.76
VPS13D-211ENST00000543710 PNNQ9H307 717 aaKnown RBP10.26□□□□□ -0.77
VPS13D-211ENST00000543710 EFCAB2Q5VUJ9 269 aa10.25□□□□□ -0.77
VPS13D-211ENST00000543710 POGKQ9P215 609 aa10.25□□□□□ -0.77
VPS13D-211ENST00000543710 PPM1GO15355 546 aaPredicted RBP10.24□□□□□ -0.77
VPS13D-211ENST00000543710 POGZQ7Z3K3 1410 aa10.24□□□□□ -0.77
VPS13D-211ENST00000543710 CASC1Q6TDU7 716 aa10.24□□□□□ -0.77
VPS13D-211ENST00000543710 WASHC2AQ641Q2 1341 aa10.24□□□□□ -0.77
VPS13D-211ENST00000543710 HSP90AA1P07900 732 aaKnown RBP10.23□□□□□ -0.77
VPS13D-211ENST00000543710 FKBP8Q14318 412 aa10.23□□□□□ -0.77
VPS13D-211ENST00000543710 PPP1R1BQ9UD71 204 aaPredicted RBP10.23□□□□□ -0.77
VPS13D-211ENST00000543710 GOLGA6L22H0YM25 854 aa10.23□□□□□ -0.77
VPS13D-211ENST00000543710 CSB-PGBD3P0DP91 1061 aa10.22□□□□□ -0.77
VPS13D-211ENST00000543710 GOLGA2Q08379 1002 aa10.22□□□□□ -0.77
VPS13D-211ENST00000543710 ARHGAP35Q9NRY4 1499 aa10.22□□□□□ -0.77
VPS13D-211ENST00000543710 KLHL34Q8N239 644 aa10.21□□□□□ -0.77
VPS13D-211ENST00000543710 TMC1Q8TDI8 760 aa10.21□□□□□ -0.78
VPS13D-211ENST00000543710 NCLP19338 710 aaKnown RBP10.21□□□□□ -0.78
VPS13D-211ENST00000543710 CFDP1Q9UEE9 299 aaPredicted RBP10.21□□□□□ -0.78
VPS13D-211ENST00000543710 CCDC136Q96JN2 1154 aa10.2□□□□□ -0.78
VPS13D-211ENST00000543710 CCER2I3L3R5 266 aa10.2□□□□□ -0.78
VPS13D-211ENST00000543710 MSH5O43196 834 aa10.2□□□□□ -0.78
VPS13D-211ENST00000543710 CFAP53Q96M91 514 aa10.2□□□□□ -0.78
VPS13D-211ENST00000543710 HNRNPUQ00839 825 aaKnown RBP eCLIP10.19□□□□□ -0.78
VPS13D-211ENST00000543710 ABCC8Q09428 1581 aa10.19□□□□□ -0.78
VPS13D-211ENST00000543710 GGT6Q6P531 493 aa10.18□□□□□ -0.78
VPS13D-211ENST00000543710 CNGB1Q14028 1251 aaPredicted RBP10.17□□□□□ -0.78
VPS13D-211ENST00000543710 VPS8Q8N3P4 1428 aa10.17□□□□□ -0.78
VPS13D-211ENST00000543710 ATF3P18847 181 aa10.17□□□□□ -0.78
VPS13D-211ENST00000543710 FMN1Q68DA7 1419 aa10.16□□□□□ -0.78
VPS13D-211ENST00000543710 G3V3G9 751 aa10.16□□□□□ -0.78
VPS13D-211ENST00000543710 DCAF8Q5TAQ9 597 aa10.16□□□□□ -0.78
VPS13D-211ENST00000543710 GOLGA6L6A8MZA4 724 aa10.14□□□□□ -0.79
VPS13D-211ENST00000543710 EVA1CP58658 441 aa10.14□□□□□ -0.79
VPS13D-211ENST00000543710 SETD5Q9C0A6 1442 aa10.13□□□□□ -0.79
VPS13D-211ENST00000543710 MRS2Q9HD23 443 aa10.13□□□□□ -0.79
VPS13D-211ENST00000543710 PPP4R2Q9NY27 417 aa10.13□□□□□ -0.79
VPS13D-211ENST00000543710 CCNB3Q8WWL7 1395 aa10.12□□□□□ -0.79
VPS13D-211ENST00000543710 TNNT2P45379 298 aaPredicted RBP10.12□□□□□ -0.79
VPS13D-211ENST00000543710 TRIM44Q96DX7 344 aaPredicted RBP10.11□□□□□ -0.79
VPS13D-211ENST00000543710 PIP4K2BP78356 416 aa10.11□□□□□ -0.79
VPS13D-211ENST00000543710 ANO8Q9HCE9 1232 aaPredicted RBP10.11□□□□□ -0.79
VPS13D-211ENST00000543710 CUX1P39880 1505 aa10.11□□□□□ -0.79
VPS13D-211ENST00000543710 ROCK2O75116 1388 aaKnown RBP10.11□□□□□ -0.79
VPS13D-211ENST00000543710 EIF3AQ14152 1382 aaKnown RBP10.11□□□□□ -0.79
VPS13D-211ENST00000543710 PHLDB1Q86UU1 1377 aa10.11□□□□□ -0.79
VPS13D-211ENST00000543710 SMARCA4P51532 1647 aa10.11□□□□□ -0.79
VPS13D-211ENST00000543710 TOM1O60784 492 aa10.11□□□□□ -0.79
VPS13D-211ENST00000543710 CADPSQ9ULU8 1353 aa10.1□□□□□ -0.79
VPS13D-211ENST00000543710 L1TD1Q5T7N2 865 aaKnown RBP10.1□□□□□ -0.79
VPS13D-211ENST00000543710 SRPK2P78362 688 aaKnown RBP10.1□□□□□ -0.79
VPS13D-211ENST00000543710 KRI1Q8N9T8 703 aaKnown RBP10.09□□□□□ -0.79
VPS13D-211ENST00000543710 EIF4G1Q04637 1599 aaKnown RBP10.09□□□□□ -0.79
VPS13D-211ENST00000543710 SOGA1O94964 1423 aa10.08□□□□□ -0.8
VPS13D-211ENST00000543710 DDX10Q13206 875 aaKnown RBP10.07□□□□□ -0.8
VPS13D-211ENST00000543710 CHMP4AQ9BY43 222 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms