RNA–Protein interactions for RNA: ENST00000542032.1

LEMD3-204, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-204ENST00000542032 PAK3O75914 559 aaPredicted RBP12.79□□□□□ -0.36
LEMD3-204ENST00000542032 C7P10643 843 aa12.79□□□□□ -0.36
LEMD3-204ENST00000542032 CREBZFQ9NS37 354 aa12.79□□□□□ -0.36
LEMD3-204ENST00000542032 SCUBE2Q9NQ36 999 aa12.78□□□□□ -0.36
LEMD3-204ENST00000542032 ASTLQ6HA08 431 aaPredicted RBP12.77□□□□□ -0.37
LEMD3-204ENST00000542032 ATMINO43313 823 aaPredicted RBP12.74□□□□□ -0.37
LEMD3-204ENST00000542032 MS4A3Q96HJ5 214 aa12.68□□□□□ -0.38
LEMD3-204ENST00000542032 MMRN1Q13201 1228 aa12.61□□□□□ -0.39
LEMD3-204ENST00000542032 ATN1P54259 1190 aaPredicted RBP12.57□□□□□ -0.4
LEMD3-204ENST00000542032 POTEFA5A3E0 1075 aa12.55□□□□□ -0.4
LEMD3-204ENST00000542032 SPNS2Q8IVW8 549 aa12.52□□□□□ -0.41
LEMD3-204ENST00000542032 NPM1P06748 294 aaKnown RBP eCLIP12.5□□□□□ -0.41
LEMD3-204ENST00000542032 STAG3Q9UJ98 1225 aa12.49□□□□□ -0.41
LEMD3-204ENST00000542032 ST18O60284 1047 aa12.46□□□□□ -0.41
LEMD3-204ENST00000542032 MNX1P50219 401 aaPredicted RBP12.41□□□□□ -0.42
LEMD3-204ENST00000542032 SPDYE4A6NLX3 237 aa12.39□□□□□ -0.43
LEMD3-204ENST00000542032 BMP2KQ9NSY1 1161 aaPredicted RBP12.38□□□□□ -0.43
LEMD3-204ENST00000542032 COLQQ9Y215 455 aaPredicted RBP12.36□□□□□ -0.43
LEMD3-204ENST00000542032 TRPC6Q9Y210 931 aa12.34□□□□□ -0.43
LEMD3-204ENST00000542032 SEC24BO95487 1268 aa12.33□□□□□ -0.44
LEMD3-204ENST00000542032 SLAIN1Q8ND83 568 aa12.32□□□□□ -0.44
LEMD3-204ENST00000542032 TSPYL2Q9H2G4 693 aaPredicted RBP12.32□□□□□ -0.44
LEMD3-204ENST00000542032 PROM2Q8N271 834 aa12.28□□□□□ -0.44
LEMD3-204ENST00000542032 KIF12Q96FN5 646 aa12.25□□□□□ -0.45
LEMD3-204ENST00000542032 CCDC61Q9Y6R9 512 aa12.25□□□□□ -0.45
LEMD3-204ENST00000542032 TIE1P35590 1138 aa12.23□□□□□ -0.45
LEMD3-204ENST00000542032 FKBP8Q14318 412 aa12.19□□□□□ -0.46
LEMD3-204ENST00000542032 MARVELD3Q96A59 401 aa12.18□□□□□ -0.46
LEMD3-204ENST00000542032 TTLL13PA6NNM8 815 aa12.17□□□□□ -0.46
LEMD3-204ENST00000542032 TMEM121BQ9BXQ6 578 aaPredicted RBP12.17□□□□□ -0.46
LEMD3-204ENST00000542032 MAP3K13O43283 966 aa12.15□□□□□ -0.46
LEMD3-204ENST00000542032 TRIM35Q9UPQ4 493 aa12.11□□□□□ -0.47
LEMD3-204ENST00000542032 IER5LQ5T953 404 aa12.1□□□□□ -0.47
LEMD3-204ENST00000542032 KRTAP3-3Q9BYR6 98 aa12.03□□□□□ -0.48
LEMD3-204ENST00000542032 KRTAP3-2Q9BYR7 98 aa12.03□□□□□ -0.48
LEMD3-204ENST00000542032 SNPHO15079 494 aa12.01□□□□□ -0.49
LEMD3-204ENST00000542032 PLCG2P16885 1265 aa11.98□□□□□ -0.49
LEMD3-204ENST00000542032 EMP3P54852 163 aa11.97□□□□□ -0.49
LEMD3-204ENST00000542032 POTEB3A0JP26 581 aa11.93□□□□□ -0.5
LEMD3-204ENST00000542032 POTEBQ6S5H4 581 aa11.93□□□□□ -0.5
LEMD3-204ENST00000542032 HS3ST6Q96QI5 342 aa11.92□□□□□ -0.5
LEMD3-204ENST00000542032 FAM205CA6NFA0 338 aa11.89□□□□□ -0.51
LEMD3-204ENST00000542032 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.89□□□□□ -0.51
LEMD3-204ENST00000542032 RASEFQ8IZ41 740 aa11.88□□□□□ -0.51
LEMD3-204ENST00000542032 PCDHB13Q9Y5F0 798 aa11.88□□□□□ -0.51
LEMD3-204ENST00000542032 IRX5P78411 483 aaPredicted RBP11.86□□□□□ -0.51
LEMD3-204ENST00000542032 TMEM106CQ9BVX2 250 aa11.84□□□□□ -0.51
LEMD3-204ENST00000542032 FBXO3Q9UK99 471 aa11.82□□□□□ -0.52
LEMD3-204ENST00000542032 SGIP1Q9BQI5 828 aa11.81□□□□□ -0.52
LEMD3-204ENST00000542032 RNF166Q96A37 237 aaPredicted RBP11.79□□□□□ -0.52
LEMD3-204ENST00000542032 IFNL1Q8IU54 200 aa11.78□□□□□ -0.52
LEMD3-204ENST00000542032 OCEL1Q9H607 264 aa11.77□□□□□ -0.53
LEMD3-204ENST00000542032 MIER1Q8N108 512 aa11.73□□□□□ -0.53
LEMD3-204ENST00000542032 VASPP50552 380 aaPredicted RBP11.69□□□□□ -0.54
LEMD3-204ENST00000542032 PLCD3Q8N3E9 789 aa11.69□□□□□ -0.54
LEMD3-204ENST00000542032 PLEKHG5O94827 1062 aa11.66□□□□□ -0.54
LEMD3-204ENST00000542032 C3orf67Q6ZVT6 689 aa11.65□□□□□ -0.54
LEMD3-204ENST00000542032 MYT1LQ9UL68 1186 aa11.63□□□□□ -0.55
LEMD3-204ENST00000542032 ZBTB47Q9UFB7 747 aaPredicted RBP11.6□□□□□ -0.55
LEMD3-204ENST00000542032 NUBP1P53384 320 aa11.55□□□□□ -0.56
LEMD3-204ENST00000542032 PDCD7Q8N8D1 485 aaKnown RBP11.54□□□□□ -0.56
LEMD3-204ENST00000542032 IFNLR1Q8IU57 520 aaPredicted RBP11.53□□□□□ -0.56
LEMD3-204ENST00000542032 ERBB3P21860 1342 aa11.51□□□□□ -0.57
LEMD3-204ENST00000542032 L3MBTL3Q96JM7 780 aaPredicted RBP11.49□□□□□ -0.57
LEMD3-204ENST00000542032 HOXB3P14651 431 aaPredicted RBP11.45□□□□□ -0.58
LEMD3-204ENST00000542032 KLHL34Q8N239 644 aa11.45□□□□□ -0.58
LEMD3-204ENST00000542032 HOXB1P14653 301 aaPredicted RBP11.44□□□□□ -0.58
LEMD3-204ENST00000542032 FAM212AQ96EL1 285 aa11.43□□□□□ -0.58
LEMD3-204ENST00000542032 ZNF710Q8N1W2 664 aa11.42□□□□□ -0.58
LEMD3-204ENST00000542032 VARS2Q5ST30 1063 aaKnown RBP11.41□□□□□ -0.58
LEMD3-204ENST00000542032 PCDHB8Q9UN66 801 aa11.4□□□□□ -0.58
LEMD3-204ENST00000542032 SPOCK2Q92563 424 aa11.39□□□□□ -0.59
LEMD3-204ENST00000542032 PYGBP11216 843 aa11.36□□□□□ -0.59
LEMD3-204ENST00000542032 MKRN3Q13064 507 aaKnown RBP11.35□□□□□ -0.59
LEMD3-204ENST00000542032 PTGER2P43116 358 aa11.34□□□□□ -0.59
LEMD3-204ENST00000542032 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.34□□□□□ -0.59
LEMD3-204ENST00000542032 GOLGA2Q08379 1002 aa11.33□□□□□ -0.6
LEMD3-204ENST00000542032 PLA2G2EQ9NZK7 142 aa11.33□□□□□ -0.6
LEMD3-204ENST00000542032 DCAF8Q5TAQ9 597 aa11.32□□□□□ -0.6
LEMD3-204ENST00000542032 GSE1Q14687 1217 aa11.31□□□□□ -0.6
LEMD3-204ENST00000542032 ZNF687Q8N1G0 1237 aa11.3□□□□□ -0.6
LEMD3-204ENST00000542032 DOK7Q18PE1 504 aa11.29□□□□□ -0.6
LEMD3-204ENST00000542032 ANKRD13DQ6ZTN6 518 aa11.27□□□□□ -0.61
LEMD3-204ENST00000542032 DPY19L2Q6NUT2 758 aa11.26□□□□□ -0.61
LEMD3-204ENST00000542032 CHRM1P11229 460 aaPredicted RBP11.24□□□□□ -0.61
LEMD3-204ENST00000542032 RIMBP2O15034 1052 aa11.21□□□□□ -0.61
LEMD3-204ENST00000542032 G3V3G9 751 aa11.2□□□□□ -0.62
LEMD3-204ENST00000542032 CIZ1Q9ULV3 898 aaPredicted RBP11.19□□□□□ -0.62
LEMD3-204ENST00000542032 BOLA1Q9Y3E2 137 aa11.19□□□□□ -0.62
LEMD3-204ENST00000542032 TRIM41Q8WV44 630 aa11.16□□□□□ -0.62
LEMD3-204ENST00000542032 ILDR1Q86SU0 546 aaPredicted RBP11.15□□□□□ -0.62
LEMD3-204ENST00000542032 LSM11P83369 360 aaKnown RBP eCLIP11.1□□□□□ -0.63
LEMD3-204ENST00000542032 ZNF467Q7Z7K2 595 aaPredicted RBP11.1□□□□□ -0.63
LEMD3-204ENST00000542032 HCSTQ9UBK5 93 aa11.09□□□□□ -0.63
LEMD3-204ENST00000542032 PSEN1P49768 467 aa11.07□□□□□ -0.64
LEMD3-204ENST00000542032 PKD2Q13563 968 aa11.07□□□□□ -0.64
LEMD3-204ENST00000542032 ZSWIM6Q9HCJ5 1215 aa11.07□□□□□ -0.64
LEMD3-204ENST00000542032 GPR153Q6NV75 609 aa11.06□□□□□ -0.64
LEMD3-204ENST00000542032 RNF25Q96BH1 459 aaPredicted RBP11.04□□□□□ -0.64
LEMD3-204ENST00000542032 IRX2Q9BZI1 471 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms