RNA–Protein interactions for RNA: ENST00000542032.1

LEMD3-204, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-204ENST00000542032 AEBP2Q6ZN18 517 aaPredicted RBP26.64■■□□□ 1.86
LEMD3-204ENST00000542032 CHIC1Q5VXU3 224 aa24.83■■□□□ 1.57
LEMD3-204ENST00000542032 SENP3Q9H4L4 574 aaPredicted RBP22.84■■□□□ 1.25
LEMD3-204ENST00000542032 PHF23Q9BUL5 403 aaPredicted RBP22.42■■□□□ 1.18
LEMD3-204ENST00000542032 POTEDQ86YR6 584 aa21.82■■□□□ 1.08
LEMD3-204ENST00000542032 FOXD1Q16676 465 aa21.46■■□□□ 1.03
LEMD3-204ENST00000542032 MSH5O43196 834 aa20.44■□□□□ 0.86
LEMD3-204ENST00000542032 PIAS4Q8N2W9 510 aaPredicted RBP19.82■□□□□ 0.76
LEMD3-204ENST00000542032 PPP6R1Q9UPN7 881 aa19.27■□□□□ 0.68
LEMD3-204ENST00000542032 ADRA2BP18089 450 aa19.16■□□□□ 0.66
LEMD3-204ENST00000542032 PLPPR3Q6T4P5 718 aa18.86■□□□□ 0.61
LEMD3-204ENST00000542032 CACNB1Q02641 598 aaPredicted RBP18.26■□□□□ 0.51
LEMD3-204ENST00000542032 DMRT2Q9Y5R5 561 aa17.95■□□□□ 0.46
LEMD3-204ENST00000542032 MAPK8IP2Q13387 824 aaPredicted RBP17.93■□□□□ 0.46
LEMD3-204ENST00000542032 SCAF1Q9H7N4 1312 aaKnown RBP17.44■□□□□ 0.38
LEMD3-204ENST00000542032 DCAF8L1A6NGE4 600 aa17.38■□□□□ 0.37
LEMD3-204ENST00000542032 RNF39Q9H2S5 420 aa17.36■□□□□ 0.37
LEMD3-204ENST00000542032 C1QBPQ07021 282 aaKnown RBP17.01■□□□□ 0.31
LEMD3-204ENST00000542032 POTEHQ6S545 545 aa16.88■□□□□ 0.29
LEMD3-204ENST00000542032 HOXD11P31277 338 aaPredicted RBP16.85■□□□□ 0.29
LEMD3-204ENST00000542032 PPP4R3CPQ6ZMV5 832 aa16.43■□□□□ 0.22
LEMD3-204ENST00000542032 RNF216Q9NWF9 866 aaPredicted RBP16.43■□□□□ 0.22
LEMD3-204ENST00000542032 DNAJC5BQ9UF47 199 aa16.38■□□□□ 0.21
LEMD3-204ENST00000542032 CNKSR2Q8WXI2 1034 aa16.33■□□□□ 0.2
LEMD3-204ENST00000542032 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.12■□□□□ 0.17
LEMD3-204ENST00000542032 DSG3P32926 999 aa15.91■□□□□ 0.14
LEMD3-204ENST00000542032 CAPN15O75808 1086 aa15.8■□□□□ 0.12
LEMD3-204ENST00000542032 SPINK5Q9NQ38 1064 aaPredicted RBP15.78■□□□□ 0.12
LEMD3-204ENST00000542032 U3KPZ7 1027 aaPredicted RBP15.65■□□□□ 0.1
LEMD3-204ENST00000542032 NCBP3Q53F19 620 aaKnown RBP15.43■□□□□ 0.06
LEMD3-204ENST00000542032 ABCB7O75027 752 aa15.39■□□□□ 0.05
LEMD3-204ENST00000542032 SP7Q8TDD2 431 aaPredicted RBP15.32■□□□□ 0.04
LEMD3-204ENST00000542032 TRHP20396 242 aaPredicted RBP15.31■□□□□ 0.04
LEMD3-204ENST00000542032 CHRDL2Q6WN34 429 aa15.31■□□□□ 0.04
LEMD3-204ENST00000542032 NPM3O75607 178 aaKnown RBP15.26■□□□□ 0.03
LEMD3-204ENST00000542032 RBM42Q9BTD8 480 aaKnown RBP15.17■□□□□ 0.02
LEMD3-204ENST00000542032 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
LEMD3-204ENST00000542032 APLP2Q06481 763 aa15.02■□□□□ -0
LEMD3-204ENST00000542032 KCNA4P22459 653 aa14.97□□□□□ -0.01
LEMD3-204ENST00000542032 SLC4A2P04920 1241 aa14.85□□□□□ -0.03
LEMD3-204ENST00000542032 HAX1O00165 279 aa14.77□□□□□ -0.05
LEMD3-204ENST00000542032 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.76□□□□□ -0.05
LEMD3-204ENST00000542032 HNRNPUL2Q1KMD3 747 aaKnown RBP14.76□□□□□ -0.05
LEMD3-204ENST00000542032 PIP4P2Q8N4L2 257 aa14.73□□□□□ -0.05
LEMD3-204ENST00000542032 SAMD1Q6SPF0 538 aaPredicted RBP14.65□□□□□ -0.06
LEMD3-204ENST00000542032 POLA2Q14181 598 aa14.62□□□□□ -0.07
LEMD3-204ENST00000542032 AKT1S1Q96B36 256 aa14.6□□□□□ -0.07
LEMD3-204ENST00000542032 EVX2Q03828 476 aa14.53□□□□□ -0.08
LEMD3-204ENST00000542032 REM2Q8IYK8 340 aaPredicted RBP14.51□□□□□ -0.09
LEMD3-204ENST00000542032 FXR2P51116 673 aaKnown RBP eCLIP14.43□□□□□ -0.1
LEMD3-204ENST00000542032 PLSCR2Q9NRY7 297 aa14.43□□□□□ -0.1
LEMD3-204ENST00000542032 PITPNM1O00562 1244 aa14.39□□□□□ -0.11
LEMD3-204ENST00000542032 LHX8Q68G74 356 aa14.37□□□□□ -0.11
LEMD3-204ENST00000542032 OSCARQ8IYS5 282 aa14.23□□□□□ -0.13
LEMD3-204ENST00000542032 SLC4A1APQ9BWU0 796 aaKnown RBP14.18□□□□□ -0.14
LEMD3-204ENST00000542032 ZBTB12Q9Y330 459 aaPredicted RBP14.16□□□□□ -0.14
LEMD3-204ENST00000542032 GABBR2O75899 941 aa14.1□□□□□ -0.15
LEMD3-204ENST00000542032 MYCNP04198 464 aaPredicted RBP14.1□□□□□ -0.15
LEMD3-204ENST00000542032 C19orf67A6NJJ6 358 aa14.01□□□□□ -0.17
LEMD3-204ENST00000542032 PRKAR2AP13861 404 aaKnown RBP14.01□□□□□ -0.17
LEMD3-204ENST00000542032 ATF5Q9Y2D1 282 aaPredicted RBP13.94□□□□□ -0.18
LEMD3-204ENST00000542032 FOXD4L1Q9NU39 408 aa13.85□□□□□ -0.19
LEMD3-204ENST00000542032 ZBTB22O15209 634 aa13.81□□□□□ -0.2
LEMD3-204ENST00000542032 CLEC11AQ9Y240 323 aa13.81□□□□□ -0.2
LEMD3-204ENST00000542032 POTEIP0CG38 1075 aa13.8□□□□□ -0.2
LEMD3-204ENST00000542032 SPDYE1Q8NFV5 336 aaPredicted RBP13.7□□□□□ -0.22
LEMD3-204ENST00000542032 CHADLQ6NUI6 762 aa13.67□□□□□ -0.22
LEMD3-204ENST00000542032 SPDYE2BA6NHP3 402 aa13.65□□□□□ -0.22
LEMD3-204ENST00000542032 SPDYE6P0CI01 402 aa13.65□□□□□ -0.22
LEMD3-204ENST00000542032 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
LEMD3-204ENST00000542032 POTEMA6NI47 508 aa13.61□□□□□ -0.23
LEMD3-204ENST00000542032 CSRNP3Q8WYN3 585 aa13.54□□□□□ -0.24
LEMD3-204ENST00000542032 POTEGQ6S5H5 508 aa13.53□□□□□ -0.24
LEMD3-204ENST00000542032 DCBLD2Q96PD2 775 aa13.51□□□□□ -0.25
LEMD3-204ENST00000542032 CD44P16070 742 aaKnown RBP13.5□□□□□ -0.25
LEMD3-204ENST00000542032 OTUD5Q96G74 571 aa13.49□□□□□ -0.25
LEMD3-204ENST00000542032 EHMT2Q96KQ7 1210 aa13.48□□□□□ -0.25
LEMD3-204ENST00000542032 ATXN8OSP0DMR3 200 aa13.42□□□□□ -0.26
LEMD3-204ENST00000542032 FBLN2P98095 1184 aa13.41□□□□□ -0.26
LEMD3-204ENST00000542032 PRR29P0C7W0 189 aa13.38□□□□□ -0.27
LEMD3-204ENST00000542032 CLCN6P51797 869 aa13.38□□□□□ -0.27
LEMD3-204ENST00000542032 ZNF692Q9BU19 519 aaPredicted RBP13.38□□□□□ -0.27
LEMD3-204ENST00000542032 SSUH2Q9Y2M2 353 aa13.36□□□□□ -0.27
LEMD3-204ENST00000542032 POTEB2H3BUK9 544 aa13.34□□□□□ -0.27
LEMD3-204ENST00000542032 PCDH10Q9P2E7 1040 aa13.33□□□□□ -0.28
LEMD3-204ENST00000542032 FARP1Q9Y4F1 1045 aaPredicted RBP13.29□□□□□ -0.28
LEMD3-204ENST00000542032 MKRN4PQ13434 485 aaPredicted RBP13.2□□□□□ -0.3
LEMD3-204ENST00000542032 ZNF579Q8NAF0 562 aaKnown RBP13.2□□□□□ -0.3
LEMD3-204ENST00000542032 GALR2O43603 387 aaPredicted RBP13.18□□□□□ -0.3
LEMD3-204ENST00000542032 ZRANB1Q9UGI0 708 aa13.16□□□□□ -0.3
LEMD3-204ENST00000542032 PABPN1Q86U42 306 aaKnown RBP eCLIP13.15□□□□□ -0.3
LEMD3-204ENST00000542032 LCE2DQ5TA82 110 aaPredicted RBP13.07□□□□□ -0.32
LEMD3-204ENST00000542032 PELP1Q8IZL8 1130 aaKnown RBP13.02□□□□□ -0.33
LEMD3-204ENST00000542032 FAM163AQ96GL9 167 aaPredicted RBP13.02□□□□□ -0.33
LEMD3-204ENST00000542032 POTEJP0CG39 1038 aa12.97□□□□□ -0.33
LEMD3-204ENST00000542032 METRNQ9UJH8 293 aa12.92□□□□□ -0.34
LEMD3-204ENST00000542032 PHF12Q96QT6 1004 aa12.9□□□□□ -0.34
LEMD3-204ENST00000542032 MAMSTRQ6ZN01 415 aa12.87□□□□□ -0.35
LEMD3-204ENST00000542032 CDAN1Q8IWY9 1227 aa12.82□□□□□ -0.36
LEMD3-204ENST00000542032 SLC39A7Q92504 469 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms