RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 PRR29P0C7W0 189 aa11.46□□□□□ -0.57
CLTCL1-206ENST00000540896 CCDC88BA6NC98 1476 aa11.44□□□□□ -0.58
CLTCL1-206ENST00000540896 NESP48681 1621 aa11.4□□□□□ -0.58
CLTCL1-206ENST00000540896 CADPSQ9ULU8 1353 aa11.4□□□□□ -0.59
CLTCL1-206ENST00000540896 LAMC3Q9Y6N6 1575 aa11.37□□□□□ -0.59
CLTCL1-206ENST00000540896 STAG3Q9UJ98 1225 aa11.35□□□□□ -0.59
CLTCL1-206ENST00000540896 CFTRP13569 1480 aa11.34□□□□□ -0.59
CLTCL1-206ENST00000540896 SPDYE4A6NLX3 237 aa11.32□□□□□ -0.6
CLTCL1-206ENST00000540896 PDS5BQ9NTI5 1447 aa11.32□□□□□ -0.6
CLTCL1-206ENST00000540896 ERCC6Q03468 1493 aa11.31□□□□□ -0.6
CLTCL1-206ENST00000540896 C19orf67A6NJJ6 358 aa11.29□□□□□ -0.6
CLTCL1-206ENST00000540896 CHADLQ6NUI6 762 aa11.29□□□□□ -0.6
CLTCL1-206ENST00000540896 KIF21AQ7Z4S6 1674 aa11.26□□□□□ -0.61
CLTCL1-206ENST00000540896 FANCD2Q9BXW9 1451 aa11.25□□□□□ -0.61
CLTCL1-206ENST00000540896 EVX2Q03828 476 aa11.25□□□□□ -0.61
CLTCL1-206ENST00000540896 PRDM2Q13029 1718 aa11.25□□□□□ -0.61
CLTCL1-206ENST00000540896 CEP164Q9UPV0 1460 aa11.22□□□□□ -0.61
CLTCL1-206ENST00000540896 FARP1Q9Y4F1 1045 aaPredicted RBP11.21□□□□□ -0.61
CLTCL1-206ENST00000540896 MRC2Q9UBG0 1479 aa11.18□□□□□ -0.62
CLTCL1-206ENST00000540896 THOC2Q8NI27 1593 aaKnown RBP11.16□□□□□ -0.62
CLTCL1-206ENST00000540896 CLCN6P51797 869 aa11.15□□□□□ -0.62
CLTCL1-206ENST00000540896 TRIM41Q8WV44 630 aa11.14□□□□□ -0.63
CLTCL1-206ENST00000540896 URB2Q14146 1524 aaKnown RBP11.13□□□□□ -0.63
CLTCL1-206ENST00000540896 CD44P16070 742 aaKnown RBP11.12□□□□□ -0.63
CLTCL1-206ENST00000540896 WDR62O43379 1518 aa11.12□□□□□ -0.63
CLTCL1-206ENST00000540896 GABBR2O75899 941 aa11.11□□□□□ -0.63
CLTCL1-206ENST00000540896 CREBZFQ9NS37 354 aa11.1□□□□□ -0.63
CLTCL1-206ENST00000540896 CUX2O14529 1486 aa11.1□□□□□ -0.63
CLTCL1-206ENST00000540896 ABCC8Q09428 1581 aa11.09□□□□□ -0.63
CLTCL1-206ENST00000540896 TOPBP1Q92547 1522 aa11.09□□□□□ -0.63
CLTCL1-206ENST00000540896 DNMBPQ6XZF7 1577 aa11.07□□□□□ -0.64
CLTCL1-206ENST00000540896 CUX1P39880 1505 aa11.05□□□□□ -0.64
CLTCL1-206ENST00000540896 WRNQ14191 1432 aaPredicted RBP eCLIP11.05□□□□□ -0.64
CLTCL1-206ENST00000540896 NPM1P06748 294 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLTCL1-206ENST00000540896 PROM2Q8N271 834 aa11.03□□□□□ -0.64
CLTCL1-206ENST00000540896 PAK3O75914 559 aaPredicted RBP11.01□□□□□ -0.65
CLTCL1-206ENST00000540896 POLA1P09884 1462 aaPredicted RBP11□□□□□ -0.65
CLTCL1-206ENST00000540896 FGD5Q6ZNL6 1462 aa11□□□□□ -0.65
CLTCL1-206ENST00000540896 SYNJ1O43426 1573 aa11□□□□□ -0.65
CLTCL1-206ENST00000540896 TOP2BQ02880 1626 aa10.99□□□□□ -0.65
CLTCL1-206ENST00000540896 SOGA1O94964 1423 aa10.99□□□□□ -0.65
CLTCL1-206ENST00000540896 ZRANB1Q9UGI0 708 aa10.98□□□□□ -0.65
CLTCL1-206ENST00000540896 IFT140Q96RY7 1462 aa10.98□□□□□ -0.65
CLTCL1-206ENST00000540896 BIVM-ERCC5R4GMW8 1640 aa10.98□□□□□ -0.65
CLTCL1-206ENST00000540896 ZNF579Q8NAF0 562 aaKnown RBP10.97□□□□□ -0.65
CLTCL1-206ENST00000540896 RAD54L2Q9Y4B4 1467 aa10.97□□□□□ -0.65
CLTCL1-206ENST00000540896 TARBP1Q13395 1621 aaKnown RBP10.95□□□□□ -0.66
CLTCL1-206ENST00000540896 FAM9AQ8IZU1 332 aaPredicted RBP10.94□□□□□ -0.66
CLTCL1-206ENST00000540896 PLEKHG5O94827 1062 aa10.93□□□□□ -0.66
CLTCL1-206ENST00000540896 ZNF608Q9ULD9 1512 aaPredicted RBP10.93□□□□□ -0.66
CLTCL1-206ENST00000540896 TDRD9Q8NDG6 1382 aaKnown RBP10.91□□□□□ -0.66
CLTCL1-206ENST00000540896 AQRO60306 1485 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLTCL1-206ENST00000540896 ABCA10Q8WWZ4 1543 aa10.89□□□□□ -0.67
CLTCL1-206ENST00000540896 MNX1P50219 401 aaPredicted RBP10.89□□□□□ -0.67
CLTCL1-206ENST00000540896 DCBLD2Q96PD2 775 aa10.89□□□□□ -0.67
CLTCL1-206ENST00000540896 WDR97A6NE52 1622 aa10.87□□□□□ -0.67
CLTCL1-206ENST00000540896 EIF4G3O43432 1585 aaKnown RBP10.87□□□□□ -0.67
CLTCL1-206ENST00000540896 DNAJC5Q9H3Z4 198 aa10.87□□□□□ -0.67
CLTCL1-206ENST00000540896 GAPVD1Q14C86 1478 aa10.84□□□□□ -0.67
CLTCL1-206ENST00000540896 MIER1Q8N108 512 aa10.83□□□□□ -0.68
CLTCL1-206ENST00000540896 ABCA5Q8WWZ7 1642 aa10.83□□□□□ -0.68
CLTCL1-206ENST00000540896 GRIN2BQ13224 1484 aa10.82□□□□□ -0.68
CLTCL1-206ENST00000540896 LHX8Q68G74 356 aa10.82□□□□□ -0.68
CLTCL1-206ENST00000540896 EEA1Q15075 1411 aa10.81□□□□□ -0.68
CLTCL1-206ENST00000540896 KIF27Q86VH2 1401 aa10.81□□□□□ -0.68
CLTCL1-206ENST00000540896 RUSC2Q8N2Y8 1516 aa10.8□□□□□ -0.68
CLTCL1-206ENST00000540896 PBRM1Q86U86 1689 aa10.79□□□□□ -0.68
CLTCL1-206ENST00000540896 POTEIP0CG38 1075 aa10.79□□□□□ -0.68
CLTCL1-206ENST00000540896 LOC105371045A0A1W2PR82 267 aa10.78□□□□□ -0.68
CLTCL1-206ENST00000540896 SNAPC4Q5SXM2 1469 aa10.78□□□□□ -0.68
CLTCL1-206ENST00000540896 FKBP8Q14318 412 aa10.77□□□□□ -0.69
CLTCL1-206ENST00000540896 ZBTB47Q9UFB7 747 aaPredicted RBP10.77□□□□□ -0.69
CLTCL1-206ENST00000540896 ERICH3Q5RHP9 1530 aa10.77□□□□□ -0.69
CLTCL1-206ENST00000540896 IGF1RP08069 1367 aa10.77□□□□□ -0.69
CLTCL1-206ENST00000540896 MAGI1Q96QZ7 1491 aaPredicted RBP10.76□□□□□ -0.69
CLTCL1-206ENST00000540896 GALR2O43603 387 aaPredicted RBP10.76□□□□□ -0.69
CLTCL1-206ENST00000540896 PLCD3Q8N3E9 789 aa10.76□□□□□ -0.69
CLTCL1-206ENST00000540896 CHMP7Q8WUX9 453 aaPredicted RBP10.76□□□□□ -0.69
CLTCL1-206ENST00000540896 PHF12Q96QT6 1004 aa10.76□□□□□ -0.69
CLTCL1-206ENST00000540896 SYNJ2O15056 1496 aa10.73□□□□□ -0.69
CLTCL1-206ENST00000540896 TSPYL2Q9H2G4 693 aaPredicted RBP10.72□□□□□ -0.69
CLTCL1-206ENST00000540896 FHAD1B1AJZ9 1412 aa10.72□□□□□ -0.69
CLTCL1-206ENST00000540896 CHD1O14646 1710 aa10.72□□□□□ -0.69
CLTCL1-206ENST00000540896 UBTFP17480 764 aaKnown RBP10.71□□□□□ -0.69
CLTCL1-206ENST00000540896 ADAMTS12P58397 1594 aa10.71□□□□□ -0.69
CLTCL1-206ENST00000540896 CUL7Q14999 1698 aa10.69□□□□□ -0.7
CLTCL1-206ENST00000540896 CARMIL1Q5VZK9 1371 aa10.69□□□□□ -0.7
CLTCL1-206ENST00000540896 FBXO3Q9UK99 471 aa10.68□□□□□ -0.7
CLTCL1-206ENST00000540896 GRIN2AQ12879 1464 aa10.68□□□□□ -0.7
CLTCL1-206ENST00000540896 CCDC61Q9Y6R9 512 aa10.67□□□□□ -0.7
CLTCL1-206ENST00000540896 GOLGA3Q08378 1498 aa10.64□□□□□ -0.71
CLTCL1-206ENST00000540896 RAPGEF2Q9Y4G8 1499 aa10.64□□□□□ -0.71
CLTCL1-206ENST00000540896 PRXQ9BXM0 1461 aa10.63□□□□□ -0.71
CLTCL1-206ENST00000540896 MS4A3Q96HJ5 214 aa10.63□□□□□ -0.71
CLTCL1-206ENST00000540896 KIF21BO75037 1637 aa10.62□□□□□ -0.71
CLTCL1-206ENST00000540896 CEP170Q5SW79 1584 aa10.61□□□□□ -0.71
CLTCL1-206ENST00000540896 NUP160Q12769 1436 aa10.61□□□□□ -0.71
CLTCL1-206ENST00000540896 KIF12Q96FN5 646 aa10.61□□□□□ -0.71
CLTCL1-206ENST00000540896 RANGAP1P46060 587 aaPredicted RBP10.6□□□□□ -0.71
CLTCL1-206ENST00000540896 ASTLQ6HA08 431 aaPredicted RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms